Wall clock time and date at job start Wed Apr 1 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32153 * 120.00106 * 2 1 4 4 C 1.32130 * 120.00055 * 180.02562 * 3 2 1 5 5 C 1.38388 * 119.99765 * 0.02562 * 4 3 2 6 6 N 1.32133 * 119.99556 * 359.74191 * 5 4 3 7 7 C 1.32153 * 119.99982 * 0.51315 * 6 5 4 8 8 C 1.50700 * 119.99493 * 179.76363 * 7 6 5 9 9 N 1.46906 * 109.47059 * 269.72340 * 8 7 6 10 10 C 1.48010 * 111.00192 * 69.87790 * 9 8 7 11 11 C 1.54280 * 107.02637 * 214.40119 * 10 9 8 12 12 C 1.53311 * 104.79790 * 1.99622 * 11 10 9 13 13 C 1.53355 * 111.50429 * 141.00503 * 12 11 10 14 14 C 1.54764 * 101.43708 * 98.54251 * 13 12 11 15 15 N 1.46904 * 105.53804 * 24.29454 * 14 13 12 16 16 C 1.46497 * 124.37926 * 163.22462 * 15 14 13 17 17 C 1.53003 * 109.47210 * 90.00174 * 16 15 14 18 18 C 1.50693 * 109.47013 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00374 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99946 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99785 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00155 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47080 * 90.00200 * 22 20 18 24 24 H 1.48495 * 109.47260 * 210.00305 * 22 20 18 25 25 H 1.48502 * 109.47081 * 330.00294 * 22 20 18 26 26 C 1.34840 * 111.24242 * 343.22670 * 15 14 13 27 27 O 1.21288 * 125.18479 * 181.16802 * 26 15 14 28 28 C 1.48773 * 110.99949 * 312.24692 * 9 8 7 29 29 H 1.09000 * 109.46985 * 269.97573 * 1 2 3 30 30 H 1.09002 * 109.47014 * 29.97618 * 1 2 3 31 31 H 1.09000 * 109.47493 * 149.97876 * 1 2 3 32 32 H 1.08001 * 120.00023 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.00124 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46865 * 149.72690 * 8 7 6 35 35 H 1.08999 * 109.47499 * 29.72619 * 8 7 6 36 36 H 1.08998 * 109.91682 * 333.74423 * 10 9 8 37 37 H 1.08993 * 109.92059 * 94.85341 * 10 9 8 38 38 H 1.09002 * 110.37749 * 120.82389 * 11 10 9 39 39 H 1.09000 * 110.37209 * 243.16661 * 11 10 9 40 40 H 1.09001 * 111.04080 * 216.58191 * 13 12 11 41 41 H 1.09010 * 111.03199 * 340.50845 * 13 12 11 42 42 H 1.09004 * 110.23704 * 143.31037 * 14 13 12 43 43 H 1.09009 * 110.23683 * 265.27823 * 14 13 12 44 44 H 1.09007 * 109.46945 * 210.00176 * 16 15 14 45 45 H 1.08999 * 109.46963 * 329.99953 * 16 15 14 46 46 H 1.08997 * 109.46665 * 299.99966 * 17 16 15 47 47 H 1.09004 * 109.46897 * 59.99846 * 17 16 15 48 48 H 0.97002 * 119.99609 * 180.02562 * 21 20 18 49 49 H 1.09003 * 110.69137 * 276.84024 * 28 9 8 50 50 H 1.09001 * 110.68542 * 40.01524 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0005 5 6 4.1809 -0.0541 -0.0016 6 7 3.5201 -1.1983 0.0031 7 6 2.1986 -1.1981 -0.0015 8 6 1.4451 -2.5032 -0.0016 9 7 1.1993 -2.9266 -1.3867 10 6 2.4581 -3.3400 -2.0464 11 6 2.3471 -2.9290 -3.5293 12 6 0.9896 -2.2252 -3.6400 13 6 1.0606 -1.0106 -4.5735 14 6 0.4980 -1.6010 -5.8888 15 7 -0.3388 -2.7383 -5.4833 16 6 -1.3399 -3.3763 -6.3417 17 6 -0.6854 -4.5115 -7.1317 18 6 -1.7151 -5.1673 -8.0152 19 1 -2.7345 -4.8105 -8.0132 20 6 -1.3558 -6.2229 -8.8262 21 7 -0.1147 -6.6577 -8.8283 22 14 -2.6320 -7.0354 -9.9219 23 1 -2.6578 -6.3541 -11.2411 24 1 -2.2834 -8.4665 -10.1107 25 1 -3.9695 -6.9316 -9.2850 26 6 -0.0662 -3.1191 -4.2188 27 8 -0.5945 -4.0437 -3.6381 28 6 0.6597 -1.8036 -2.1997 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 4.0291 2.0798 -0.0001 33 1 5.2609 -0.0541 -0.0024 34 1 0.4930 -2.3731 0.5129 35 1 2.0345 -3.2632 0.5115 36 1 3.3042 -2.8330 -1.5827 37 1 2.5825 -4.4198 -1.9654 38 1 3.1524 -2.2440 -3.7945 39 1 2.3710 -3.8104 -4.1701 40 1 0.4312 -0.1990 -4.2083 41 1 2.0902 -0.6767 -4.7035 42 1 -0.1045 -0.8563 -6.4090 43 1 1.3127 -1.9414 -6.5281 44 1 -2.1436 -3.7790 -5.7252 45 1 -1.7473 -2.6396 -7.0341 46 1 0.1182 -4.1088 -7.7482 47 1 -0.2780 -5.2482 -6.4393 48 1 0.1381 -7.4001 -9.3991 49 1 -0.4178 -1.7119 -2.0626 50 1 1.1617 -0.8696 -1.9473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272746773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:09 Heat of formation + Delta-G solvation = 33.253274 kcal Electronic energy + Delta-G solvation = -31163.954034 eV Core-core repulsion = 27191.579365 eV Total energy + Delta-G solvation = -3972.374669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.93855 -40.71652 -38.09816 -35.92289 -34.97176 -34.60882 -33.39263 -32.18547 -30.40687 -29.37854 -28.67408 -27.84413 -26.62154 -25.11200 -23.96817 -23.26607 -22.78111 -21.89411 -20.89909 -20.33917 -18.65734 -18.04082 -17.02069 -16.68126 -16.40278 -16.21574 -15.79093 -15.50687 -15.13895 -14.78335 -14.61993 -14.43675 -14.15515 -13.71943 -13.56457 -13.24934 -13.13856 -13.08010 -12.83015 -12.65037 -12.56185 -12.37700 -12.32956 -11.98083 -11.95375 -11.86309 -11.45407 -11.38079 -11.28785 -11.09369 -10.94169 -10.82774 -10.72161 -10.62973 -9.95775 -9.82936 -9.55219 -9.43043 -9.27506 -8.98547 -8.50092 -8.35596 -7.94873 -6.00659 -4.03990 0.35550 0.75903 3.07884 3.24526 3.32301 3.38527 3.42114 3.58715 3.60967 3.76125 3.83864 4.05741 4.32447 4.33645 4.46003 4.47755 4.49425 4.68815 4.82269 4.86372 4.96396 5.08931 5.10370 5.16218 5.19144 5.28207 5.31060 5.35523 5.40164 5.49129 5.52880 5.61920 5.65690 5.70571 5.74935 5.81766 5.91454 6.02577 6.03805 6.10336 6.16016 6.49316 6.65992 6.79562 6.84322 6.93419 7.07303 7.42169 7.55329 7.69714 7.89185 7.99818 8.36153 8.78872 9.03040 9.59946 11.10793 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.002415 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.977704 B =11591.927367 C =11693.012904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.094 3.906 3 N -0.440 5.440 4 C 0.051 3.949 5 C 0.039 3.961 6 N -0.425 5.425 7 C 0.048 3.952 8 C 0.092 3.908 9 N -0.484 5.484 10 C 0.030 3.970 11 C -0.106 4.106 12 C -0.101 4.101 13 C -0.122 4.122 14 C 0.105 3.895 15 N -0.616 5.616 16 C 0.130 3.870 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.530 3.470 27 O -0.508 6.508 28 C 0.052 3.948 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.021 0.979 48 H 0.261 0.739 49 H 0.091 0.909 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 18.352 18.434 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.047 4.047 3 N -0.156 5.156 4 C -0.109 4.109 5 C -0.120 4.120 6 N -0.140 5.140 7 C -0.095 4.095 8 C -0.037 4.037 9 N -0.205 5.205 10 C -0.097 4.097 11 C -0.145 4.145 12 C -0.105 4.105 13 C -0.160 4.160 14 C -0.019 4.019 15 N -0.350 5.350 16 C 0.010 3.990 17 C -0.026 4.026 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.315 3.685 27 O -0.382 6.382 28 C -0.076 4.076 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.039 0.961 48 H 0.070 0.930 49 H 0.110 0.890 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.126 17.208 18.645 26.641 hybrid contribution 0.341 0.379 -0.835 0.978 sum 8.466 17.587 17.810 26.423 Atomic orbital electron populations 1.21148 0.87654 1.05051 1.04020 1.22171 0.98516 0.88978 0.95080 1.68330 1.08948 1.29122 1.09164 1.23768 0.90814 0.99897 0.96432 1.23789 1.01946 0.88912 0.97362 1.68384 1.08100 1.29740 1.07798 1.23080 0.91087 0.98148 0.97211 1.21522 0.99139 0.90247 0.92814 1.65253 1.24332 1.30799 1.00120 1.23079 0.91342 1.02121 0.93191 1.22194 0.94141 1.01037 0.97120 1.21432 0.96842 0.96473 0.95791 1.22562 1.02359 0.96349 0.94748 1.22033 0.94999 0.88680 0.96220 1.48666 1.39079 1.33174 1.14046 1.21775 0.89422 0.95874 0.91957 1.19400 0.96269 0.92377 0.94536 1.21093 0.95772 1.15974 1.23206 0.92500 1.25004 0.95338 0.96825 0.97122 1.69976 1.17008 1.26832 1.39361 0.86556 0.81816 0.78662 0.80753 1.20665 1.21179 1.19769 1.19884 0.82593 0.84247 0.81790 1.90723 1.54010 1.29096 1.64395 1.23311 1.01066 0.92772 0.90485 0.89733 0.89849 0.88823 0.81425 0.81411 0.88117 0.88404 0.91823 0.89682 0.90788 0.90005 0.90149 0.89670 0.90652 0.91169 0.91173 0.91785 0.96593 0.96082 0.92957 0.89041 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 8.68 36.01 0.31 -0.60 16 2 C 0.09 0.88 5.27 -82.42 -0.43 0.45 16 3 N -0.44 -4.26 10.42 -9.29 -0.10 -4.36 16 4 C 0.05 0.38 11.23 -17.37 -0.19 0.19 16 5 C 0.04 0.30 11.23 -17.37 -0.19 0.11 16 6 N -0.42 -4.24 8.96 -9.29 -0.08 -4.33 16 7 C 0.05 0.47 4.69 -82.42 -0.39 0.08 16 8 C 0.09 0.92 5.42 -4.97 -0.03 0.89 16 9 N -0.48 -6.08 5.54 -232.23 -1.29 -7.36 16 10 C 0.03 0.38 6.48 -2.54 -0.02 0.36 16 11 C -0.11 -1.40 6.16 -25.90 -0.16 -1.56 16 12 C -0.10 -1.38 0.73 -155.33 -0.11 -1.50 16 13 C -0.12 -1.34 6.26 -25.62 -0.16 -1.50 16 14 C 0.10 1.42 7.37 -2.89 -0.02 1.40 16 15 N -0.62 -11.27 2.95 -172.55 -0.51 -11.78 16 16 C 0.13 2.78 5.88 -4.04 -0.02 2.75 16 17 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 18 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 22 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.53 9.90 6.68 -11.31 -0.08 9.83 16 27 O -0.51 -11.61 17.50 5.55 0.10 -11.52 16 28 C 0.05 0.62 3.45 -2.44 -0.01 0.61 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.74 3.77 -51.93 -0.20 0.54 16 32 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.10 0.85 6.70 -51.93 -0.35 0.50 16 35 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.06 0.75 5.92 -51.93 -0.31 0.44 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.82 7.44 -51.93 -0.39 0.43 16 39 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 40 H 0.08 0.77 7.95 -51.93 -0.41 0.36 16 41 H 0.08 0.78 7.45 -51.92 -0.39 0.40 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 44 H 0.07 1.58 7.96 -51.92 -0.41 1.17 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.09 1.13 6.78 -51.93 -0.35 0.77 16 50 H 0.05 0.59 4.46 -51.93 -0.23 0.36 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -35.78 390.56 -9.97 -45.75 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.63 Total: -0.67 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.06 Total: -1.95 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -1.24 Total: -54.36 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.10 Total: -11.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.78 -9.97 -45.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272746773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.001 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds