Wall clock time and date at job start Wed Apr 1 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32153 * 120.00106 * 2 1 4 4 C 1.32130 * 120.00055 * 180.02562 * 3 2 1 5 5 C 1.38388 * 119.99765 * 0.02562 * 4 3 2 6 6 N 1.32133 * 119.99556 * 359.74191 * 5 4 3 7 7 C 1.32153 * 119.99982 * 0.51315 * 6 5 4 8 8 C 1.50700 * 119.99493 * 179.76363 * 7 6 5 9 9 N 1.46906 * 109.47059 * 269.72340 * 8 7 6 10 10 C 1.48010 * 111.00192 * 69.87790 * 9 8 7 11 11 C 1.54280 * 107.02637 * 214.40119 * 10 9 8 12 12 C 1.53311 * 104.79790 * 1.99622 * 11 10 9 13 13 C 1.53355 * 111.50429 * 141.00503 * 12 11 10 14 14 C 1.54764 * 101.43708 * 98.54251 * 13 12 11 15 15 N 1.46904 * 105.53804 * 24.29454 * 14 13 12 16 16 C 1.46497 * 124.37926 * 163.22462 * 15 14 13 17 17 C 1.53003 * 109.47210 * 90.00174 * 16 15 14 18 18 C 1.50693 * 109.47013 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00374 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99946 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99785 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00155 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47080 * 90.00200 * 22 20 18 24 24 H 1.48495 * 109.47260 * 210.00305 * 22 20 18 25 25 H 1.48502 * 109.47081 * 330.00294 * 22 20 18 26 26 C 1.34840 * 111.24242 * 343.22670 * 15 14 13 27 27 O 1.21288 * 125.18479 * 181.16802 * 26 15 14 28 28 C 1.48773 * 110.99949 * 312.24692 * 9 8 7 29 29 H 1.09000 * 109.46985 * 269.97573 * 1 2 3 30 30 H 1.09002 * 109.47014 * 29.97618 * 1 2 3 31 31 H 1.09000 * 109.47493 * 149.97876 * 1 2 3 32 32 H 1.08001 * 120.00023 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.00124 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46865 * 149.72690 * 8 7 6 35 35 H 1.08999 * 109.47499 * 29.72619 * 8 7 6 36 36 H 1.08998 * 109.91682 * 333.74423 * 10 9 8 37 37 H 1.08993 * 109.92059 * 94.85341 * 10 9 8 38 38 H 1.09002 * 110.37749 * 120.82389 * 11 10 9 39 39 H 1.09000 * 110.37209 * 243.16661 * 11 10 9 40 40 H 1.09001 * 111.04080 * 216.58191 * 13 12 11 41 41 H 1.09010 * 111.03199 * 340.50845 * 13 12 11 42 42 H 1.09004 * 110.23704 * 143.31037 * 14 13 12 43 43 H 1.09009 * 110.23683 * 265.27823 * 14 13 12 44 44 H 1.09007 * 109.46945 * 210.00176 * 16 15 14 45 45 H 1.08999 * 109.46963 * 329.99953 * 16 15 14 46 46 H 1.08997 * 109.46665 * 299.99966 * 17 16 15 47 47 H 1.09004 * 109.46897 * 59.99846 * 17 16 15 48 48 H 0.97002 * 119.99609 * 180.02562 * 21 20 18 49 49 H 1.09003 * 110.69137 * 276.84024 * 28 9 8 50 50 H 1.09001 * 110.68542 * 40.01524 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0005 5 6 4.1809 -0.0541 -0.0016 6 7 3.5201 -1.1983 0.0031 7 6 2.1986 -1.1981 -0.0015 8 6 1.4451 -2.5032 -0.0016 9 7 1.1993 -2.9266 -1.3867 10 6 2.4581 -3.3400 -2.0464 11 6 2.3471 -2.9290 -3.5293 12 6 0.9896 -2.2252 -3.6400 13 6 1.0606 -1.0106 -4.5735 14 6 0.4980 -1.6010 -5.8888 15 7 -0.3388 -2.7383 -5.4833 16 6 -1.3399 -3.3763 -6.3417 17 6 -0.6854 -4.5115 -7.1317 18 6 -1.7151 -5.1673 -8.0152 19 1 -2.7345 -4.8105 -8.0132 20 6 -1.3558 -6.2229 -8.8262 21 7 -0.1147 -6.6577 -8.8283 22 14 -2.6320 -7.0354 -9.9219 23 1 -2.6578 -6.3541 -11.2411 24 1 -2.2834 -8.4665 -10.1107 25 1 -3.9695 -6.9316 -9.2850 26 6 -0.0662 -3.1191 -4.2188 27 8 -0.5945 -4.0437 -3.6381 28 6 0.6597 -1.8036 -2.1997 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 4.0291 2.0798 -0.0001 33 1 5.2609 -0.0541 -0.0024 34 1 0.4930 -2.3731 0.5129 35 1 2.0345 -3.2632 0.5115 36 1 3.3042 -2.8330 -1.5827 37 1 2.5825 -4.4198 -1.9654 38 1 3.1524 -2.2440 -3.7945 39 1 2.3710 -3.8104 -4.1701 40 1 0.4312 -0.1990 -4.2083 41 1 2.0902 -0.6767 -4.7035 42 1 -0.1045 -0.8563 -6.4090 43 1 1.3127 -1.9414 -6.5281 44 1 -2.1436 -3.7790 -5.7252 45 1 -1.7473 -2.6396 -7.0341 46 1 0.1182 -4.1088 -7.7482 47 1 -0.2780 -5.2482 -6.4393 48 1 0.1381 -7.4001 -9.3991 49 1 -0.4178 -1.7119 -2.0626 50 1 1.1617 -0.8696 -1.9473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272746773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:07 Heat of formation + Delta-G solvation = 7.029136 kcal Electronic energy + Delta-G solvation = -31165.091198 eV Core-core repulsion = 27191.579365 eV Total energy + Delta-G solvation = -3973.511833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.70293 -41.81972 -39.19794 -37.41957 -36.05527 -35.54905 -34.92523 -33.55079 -31.72806 -30.53142 -29.75393 -28.75696 -27.49317 -26.94133 -25.00117 -23.94191 -23.67723 -23.59590 -21.85070 -21.73558 -19.98730 -18.73437 -18.67662 -17.78202 -17.48005 -17.13242 -16.92763 -16.68560 -16.52002 -16.26868 -15.67992 -15.50491 -15.24485 -14.89498 -14.55297 -14.47849 -14.39600 -14.15179 -13.99608 -13.75615 -13.63922 -13.50378 -13.31991 -13.24758 -13.12242 -12.85645 -12.83717 -12.70090 -12.56403 -12.33631 -12.12397 -12.00503 -11.94350 -11.91977 -11.79980 -11.59788 -11.41762 -10.62183 -10.54334 -10.19749 -10.01102 -9.52898 -9.36581 -8.24504 -6.37549 -0.24078 0.13309 1.38066 1.40989 1.51911 1.63331 2.15113 2.41171 2.61620 2.88959 3.06425 3.08939 3.19536 3.25568 3.39585 3.44671 3.51774 3.75068 3.82840 4.02597 4.08413 4.10092 4.27708 4.28687 4.36328 4.41233 4.43581 4.49405 4.52110 4.59138 4.64033 4.66379 4.69514 4.74947 4.76604 4.80329 4.84694 4.90831 4.91200 5.04550 5.09017 5.14815 5.33335 5.45540 5.45680 5.60341 5.74839 5.83432 5.92697 6.15126 6.32612 6.32862 6.78215 6.81951 7.29806 7.33109 8.87791 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.002415 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.977704 B =11591.927367 C =11693.012904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.086 3.914 3 N -0.460 5.460 4 C 0.056 3.944 5 C 0.039 3.961 6 N -0.447 5.447 7 C 0.035 3.965 8 C 0.096 3.904 9 N -0.508 5.508 10 C 0.036 3.964 11 C -0.105 4.105 12 C -0.097 4.097 13 C -0.105 4.105 14 C 0.096 3.904 15 N -0.623 5.623 16 C 0.144 3.856 17 C 0.025 3.975 18 C -0.545 4.545 19 H 0.067 0.933 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.263 1.263 26 C 0.516 3.484 27 O -0.563 6.563 28 C 0.064 3.936 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.202 0.798 33 H 0.198 0.802 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.091 0.909 46 H -0.002 1.002 47 H -0.030 1.030 48 H 0.264 0.736 49 H 0.086 0.914 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 21.390 18.435 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 N -0.176 5.176 4 C -0.104 4.104 5 C -0.121 4.121 6 N -0.163 5.163 7 C -0.107 4.107 8 C -0.033 4.033 9 N -0.230 5.230 10 C -0.092 4.092 11 C -0.143 4.143 12 C -0.102 4.102 13 C -0.143 4.143 14 C -0.026 4.026 15 N -0.356 5.356 16 C 0.022 3.978 17 C -0.013 4.013 18 C -0.583 4.583 19 H 0.085 0.915 20 C -0.199 4.199 21 N -0.574 5.574 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.187 1.187 26 C 0.304 3.696 27 O -0.441 6.441 28 C -0.064 4.064 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.218 0.782 33 H 0.215 0.785 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.016 0.984 47 H -0.011 1.011 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.449 20.287 18.644 28.819 hybrid contribution 0.344 -0.561 -0.786 1.024 sum 8.792 19.726 17.858 28.024 Atomic orbital electron populations 1.21145 0.86875 1.04868 1.04758 1.22313 0.99140 0.88821 0.95161 1.68386 1.10113 1.29121 1.09931 1.24351 0.90267 1.01253 0.94539 1.24324 1.03332 0.88275 0.96180 1.68350 1.08290 1.31216 1.08438 1.22899 0.91288 0.97879 0.98604 1.21478 0.99895 0.90676 0.91292 1.65183 1.24458 1.31863 1.01462 1.22974 0.92060 1.01155 0.93021 1.22215 0.94885 1.00345 0.96903 1.21421 0.94901 0.96515 0.97317 1.22628 1.04489 0.95336 0.91865 1.22365 0.94665 0.87589 0.98009 1.48779 1.38920 1.34182 1.13723 1.21341 0.89369 0.95087 0.91977 1.19200 0.95684 0.92884 0.93554 1.21556 0.96577 1.16590 1.23562 0.91451 1.26046 0.97636 0.97461 0.98741 1.70125 1.19360 1.27477 1.40392 0.85358 0.78911 0.77346 0.78901 1.18999 1.20967 1.18705 1.20838 0.82887 0.84028 0.81825 1.90674 1.56117 1.31573 1.65744 1.23235 1.00939 0.93232 0.88965 0.88609 0.89424 0.89432 0.78159 0.78478 0.87011 0.88806 0.90581 0.91612 0.87851 0.93341 0.87710 0.86729 0.88034 0.91672 0.92911 0.89068 0.98356 1.01130 0.92712 0.89577 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 8.68 71.24 0.62 -0.99 16 2 C 0.09 1.44 5.27 42.54 0.22 1.67 16 3 N -0.46 -7.63 10.42 -183.29 -1.91 -9.54 16 4 C 0.06 0.65 11.23 84.68 0.95 1.60 16 5 C 0.04 0.47 11.23 84.68 0.95 1.42 16 6 N -0.45 -8.07 8.96 -183.29 -1.64 -9.71 16 7 C 0.04 0.64 4.69 42.54 0.20 0.84 16 8 C 0.10 1.88 5.42 85.56 0.46 2.34 16 9 N -0.51 -12.90 5.54 -888.63 -4.92 -17.82 16 10 C 0.04 0.91 6.48 86.52 0.56 1.47 16 11 C -0.11 -2.76 6.16 31.13 0.19 -2.57 16 12 C -0.10 -2.60 0.73 -52.71 -0.04 -2.64 16 13 C -0.11 -2.00 6.26 31.32 0.20 -1.81 16 14 C 0.10 2.45 7.37 86.90 0.64 3.09 16 15 N -0.62 -23.16 2.95 -818.17 -2.41 -25.57 16 16 C 0.14 6.33 5.88 86.38 0.51 6.83 16 17 C 0.02 1.39 5.30 29.85 0.16 1.54 16 18 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 19 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 20 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 21 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 22 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.52 20.00 6.68 87.42 0.58 20.59 16 27 O -0.56 -27.41 17.50 -3.06 -0.05 -27.47 16 28 C 0.06 1.47 3.45 86.16 0.30 1.77 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.28 3.77 -2.39 -0.01 1.27 16 32 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.11 1.86 6.70 -2.39 -0.02 1.84 16 35 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 36 H 0.08 1.74 5.92 -2.39 -0.01 1.72 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.07 7.44 -2.39 -0.02 2.06 16 39 H 0.05 1.58 7.85 -2.39 -0.02 1.57 16 40 H 0.10 1.55 7.95 -2.39 -0.02 1.53 16 41 H 0.11 1.58 7.45 -2.38 -0.02 1.57 16 42 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.05 2.48 7.96 -2.38 -0.02 2.46 16 45 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 46 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H -0.03 -1.94 8.14 -2.39 -0.02 -1.95 16 48 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 49 H 0.09 2.08 6.78 -2.39 -0.02 2.07 16 50 H 0.07 1.44 4.46 -2.39 -0.01 1.43 16 Total: -1.00 -82.46 390.56 -0.48 -82.94 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.95 Total: 14.50 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 7.20 Total: 3.92 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -10.60 Total: -121.09 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -82.46 -0.48 -82.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272746773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.970 kcal (2) G-P(sol) polarization free energy of solvation -82.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds