Wall clock time and date at job start Wed Apr 1 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32152 * 119.99792 * 2 1 4 4 C 1.32124 * 120.00303 * 180.27489 * 3 2 1 5 5 C 1.38395 * 119.99276 * 359.73846 * 4 3 2 6 6 N 1.32129 * 119.99882 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99603 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99337 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47038 * 90.00215 * 8 7 6 10 10 C 1.48646 * 111.00084 * 290.12577 * 9 8 7 11 11 C 1.54642 * 104.63364 * 201.49077 * 10 9 8 12 12 C 1.53250 * 104.67647 * 23.68066 * 11 10 9 13 13 C 1.53615 * 111.05504 * 239.01799 * 12 11 10 14 14 C 1.54706 * 101.50972 * 262.68393 * 13 12 11 15 15 N 1.46881 * 105.51455 * 335.46933 * 14 13 12 16 16 C 1.46507 * 124.37154 * 196.78826 * 15 14 13 17 17 C 1.53004 * 109.46773 * 90.00435 * 16 15 14 18 18 C 1.50695 * 109.46637 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00546 * 0.27598 * 18 17 16 20 20 C 1.37885 * 119.99721 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47093 * 60.00328 * 22 20 18 24 24 H 1.48495 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47239 * 300.00048 * 22 20 18 26 26 C 1.34756 * 111.25708 * 17.06105 * 15 14 13 27 27 O 1.21278 * 125.13512 * 178.73690 * 26 15 14 28 28 C 1.48798 * 110.99973 * 174.50687 * 9 8 7 29 29 H 1.08998 * 109.47209 * 270.24138 * 1 2 3 30 30 H 1.09005 * 109.47339 * 30.23830 * 1 2 3 31 31 H 1.08999 * 109.46926 * 150.24439 * 1 2 3 32 32 H 1.07995 * 120.00472 * 179.71415 * 4 3 2 33 33 H 1.07991 * 119.99776 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47629 * 330.00408 * 8 7 6 35 35 H 1.09000 * 109.46755 * 209.99814 * 8 7 6 36 36 H 1.08996 * 110.40741 * 82.70085 * 10 9 8 37 37 H 1.08995 * 110.40266 * 320.27930 * 10 9 8 38 38 H 1.09003 * 110.39286 * 264.88295 * 11 10 9 39 39 H 1.08997 * 110.49462 * 142.53496 * 11 10 9 40 40 H 1.08997 * 111.02055 * 144.62343 * 13 12 11 41 41 H 1.09003 * 111.01806 * 20.73748 * 13 12 11 42 42 H 1.08997 * 110.23438 * 216.46202 * 14 13 12 43 43 H 1.08995 * 110.31108 * 94.51899 * 14 13 12 44 44 H 1.09000 * 109.46860 * 330.00633 * 16 15 14 45 45 H 1.08997 * 109.47067 * 209.99984 * 16 15 14 46 46 H 1.08992 * 109.47421 * 60.00163 * 17 16 15 47 47 H 1.08997 * 109.46955 * 299.99616 * 17 16 15 48 48 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 49 49 H 1.09001 * 110.46013 * 39.48479 * 28 9 8 50 50 H 1.09008 * 110.46009 * 276.91608 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4890 1.1446 -0.0055 5 6 4.1809 -0.0539 -0.0058 6 7 3.5202 -1.1982 0.0000 7 6 2.1987 -1.1980 0.0065 8 6 1.4452 -2.5031 0.0124 9 7 1.2071 -2.9248 1.3994 10 6 2.4751 -3.3390 2.0553 11 6 2.0307 -4.2418 3.2295 12 6 0.6486 -4.7611 2.8186 13 6 -0.4198 -4.3600 3.8469 14 6 -0.5167 -5.6420 4.7074 15 7 -0.0636 -6.7347 3.8367 16 6 -0.3110 -8.1554 4.0956 17 6 -1.6314 -8.5702 3.4434 18 6 -1.8861 -10.0313 3.7103 19 1 -1.1794 -10.6055 4.2911 20 6 -3.0245 -10.6338 3.2181 21 7 -3.8878 -9.9334 2.5155 22 14 -3.3399 -12.4451 3.5483 23 1 -3.4171 -12.6751 5.0134 24 1 -4.6215 -12.8478 2.9154 25 1 -2.2317 -13.2526 2.9782 26 6 0.6140 -6.2622 2.7721 27 8 1.1179 -6.9455 1.9061 28 6 0.3515 -4.1412 1.4475 29 1 -0.3633 0.0043 1.0276 30 1 -0.3634 0.8879 -0.5175 31 1 -0.3633 -0.8922 -0.5100 32 1 4.0289 2.0799 -0.0102 33 1 5.2608 -0.0539 -0.0107 34 1 2.0317 -3.2637 -0.5029 35 1 0.4902 -2.3736 -0.4969 36 1 3.0124 -2.4672 2.4285 37 1 3.0975 -3.9006 1.3587 38 1 1.9603 -3.6613 4.1494 39 1 2.7258 -5.0716 3.3572 40 1 -1.3702 -4.1437 3.3592 41 1 -0.0874 -3.5117 4.4454 42 1 -1.5478 -5.8104 5.0182 43 1 0.1314 -5.5618 5.5801 44 1 -0.3681 -8.3241 5.1710 45 1 0.5027 -8.7479 3.6775 46 1 -1.5743 -8.4015 2.3681 47 1 -2.4451 -7.9777 3.8615 48 1 -4.6885 -10.3573 2.1690 49 1 0.6256 -4.8316 0.6499 50 1 -0.7015 -3.8695 1.3724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272746774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:12 Heat of formation + Delta-G solvation = 20.960381 kcal Electronic energy + Delta-G solvation = -30188.622052 eV Core-core repulsion = 26215.714323 eV Total energy + Delta-G solvation = -3972.907729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55699 -40.84955 -38.08643 -36.02667 -34.89861 -34.58541 -33.45798 -32.17638 -30.49877 -29.22487 -28.52584 -27.96793 -26.81473 -25.01878 -23.57577 -23.19705 -22.91040 -21.80567 -21.22137 -20.24409 -18.62770 -18.11317 -16.84728 -16.63082 -16.49072 -16.02653 -15.60804 -15.47207 -15.24928 -15.01010 -14.55085 -14.43624 -14.18065 -13.95758 -13.49953 -13.30360 -13.14501 -12.98850 -12.84463 -12.70357 -12.57978 -12.50346 -12.14542 -12.00671 -11.85080 -11.69411 -11.50464 -11.45265 -11.28827 -11.18498 -10.93609 -10.86674 -10.72468 -10.59821 -9.99844 -9.88012 -9.44485 -9.37220 -9.34478 -9.11810 -8.70711 -8.38274 -8.02469 -6.03556 -4.07075 0.44650 0.83008 2.93936 3.25028 3.32080 3.36359 3.38435 3.52488 3.66617 3.80519 4.00876 4.14297 4.30811 4.34654 4.43749 4.44616 4.59528 4.75195 4.83862 4.92453 5.02537 5.06256 5.12912 5.21072 5.26643 5.32472 5.34595 5.42829 5.44734 5.48685 5.59446 5.68921 5.72904 5.74086 5.79156 5.87801 5.92039 5.94251 6.04859 6.10247 6.11603 6.45413 6.53734 6.69361 6.79590 6.99435 6.99814 7.49132 7.49835 7.65172 7.83696 7.96018 8.32184 8.65186 8.99319 9.56901 11.07767 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.002081 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.364391 B =13453.581040 C =13712.907074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.101 3.899 3 N -0.443 5.443 4 C 0.050 3.950 5 C 0.040 3.960 6 N -0.430 5.430 7 C 0.092 3.908 8 C 0.090 3.910 9 N -0.501 5.501 10 C 0.042 3.958 11 C -0.099 4.099 12 C -0.099 4.099 13 C -0.114 4.114 14 C 0.099 3.901 15 N -0.610 5.610 16 C 0.127 3.873 17 C 0.013 3.987 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.525 3.475 27 O -0.530 6.530 28 C 0.055 3.945 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.020 0.980 47 H 0.017 0.983 48 H 0.262 0.738 49 H 0.063 0.937 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.213 24.140 -1.391 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.040 4.040 3 N -0.158 5.158 4 C -0.110 4.110 5 C -0.119 4.119 6 N -0.145 5.145 7 C -0.049 4.049 8 C -0.039 4.039 9 N -0.225 5.225 10 C -0.086 4.086 11 C -0.137 4.137 12 C -0.103 4.103 13 C -0.151 4.151 14 C -0.025 4.025 15 N -0.342 5.342 16 C 0.007 3.993 17 C -0.025 4.025 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.201 1.201 26 C 0.310 3.690 27 O -0.407 6.407 28 C -0.073 4.073 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.034 24.108 -1.650 26.995 hybrid contribution 0.282 -1.583 -0.226 1.623 sum 12.316 22.525 -1.876 25.741 Atomic orbital electron populations 1.20769 0.87489 1.03573 1.04114 1.22101 0.98576 0.88685 0.94648 1.68322 1.08945 1.29227 1.09327 1.23746 0.90861 0.99832 0.96594 1.23721 1.01831 0.88742 0.97643 1.68272 1.08314 1.29966 1.07944 1.21842 0.90316 0.96151 0.96594 1.21145 0.99377 0.91907 0.91473 1.65509 1.12287 1.31036 1.13662 1.23127 0.91601 0.98132 0.95770 1.22161 0.94114 0.98855 0.98615 1.21358 0.97534 0.94251 0.97164 1.22652 0.98724 0.97202 0.96548 1.22117 1.00969 0.86110 0.93261 1.48630 1.53855 1.07847 1.23870 1.21812 1.00995 0.76343 1.00136 1.19388 0.90405 0.96179 0.96496 1.21050 1.06256 0.94853 1.34036 0.92543 1.25005 0.96057 0.98198 0.95022 1.69961 1.11347 1.36239 1.35586 0.86607 0.77503 0.85144 0.78450 1.20187 1.21254 1.20147 1.20180 0.78019 0.89214 0.81556 1.90694 1.47857 1.64268 1.37863 1.22974 0.98680 0.90173 0.95475 0.89217 0.90510 0.89951 0.81503 0.81502 0.91995 0.88150 0.90511 0.92812 0.90128 0.90841 0.89678 0.89252 0.90055 0.91667 0.91629 0.91181 0.96142 0.96442 0.92868 0.91891 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.78 36.01 0.35 -0.39 16 2 C 0.10 0.97 6.78 -82.42 -0.56 0.41 16 3 N -0.44 -4.40 10.42 -9.29 -0.10 -4.50 16 4 C 0.05 0.38 11.23 -17.37 -0.19 0.19 16 5 C 0.04 0.32 11.23 -17.37 -0.19 0.12 16 6 N -0.43 -4.50 10.19 -9.29 -0.09 -4.60 16 7 C 0.09 0.94 5.86 -82.42 -0.48 0.46 16 8 C 0.09 0.89 4.72 -4.97 -0.02 0.87 16 9 N -0.50 -5.36 5.36 -231.60 -1.24 -6.60 16 10 C 0.04 0.47 5.82 -1.99 -0.01 0.45 16 11 C -0.10 -1.13 6.32 -25.74 -0.16 -1.30 16 12 C -0.10 -1.30 0.83 -155.25 -0.13 -1.43 16 13 C -0.11 -1.25 6.24 -25.51 -0.16 -1.41 16 14 C 0.10 1.30 7.36 -2.94 -0.02 1.28 16 15 N -0.61 -10.93 2.94 -172.52 -0.51 -11.44 16 16 C 0.13 2.69 5.89 -4.04 -0.02 2.66 16 17 C 0.01 0.34 5.30 -27.88 -0.15 0.20 16 18 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.52 9.58 6.64 -11.22 -0.07 9.51 16 27 O -0.53 -11.90 17.09 5.56 0.09 -11.81 16 28 C 0.05 0.67 5.65 -2.57 -0.01 0.66 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.51 5.95 -51.93 -0.31 0.20 16 32 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.06 0.68 7.88 -51.93 -0.41 0.27 16 35 H 0.10 0.81 5.93 -51.93 -0.31 0.50 16 36 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 37 H 0.05 0.67 7.81 -51.93 -0.41 0.26 16 38 H 0.08 0.77 7.32 -51.93 -0.38 0.39 16 39 H 0.07 0.93 7.75 -51.93 -0.40 0.52 16 40 H 0.08 0.92 7.51 -51.93 -0.39 0.53 16 41 H 0.09 0.78 7.42 -51.93 -0.39 0.39 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.06 0.91 7.39 -51.93 -0.38 0.53 16 50 H 0.09 1.03 7.46 -51.92 -0.39 0.65 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -35.10 402.00 -10.27 -45.37 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.94 Total: -1.76 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.26 Total: -1.23 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -1.20 Total: -53.29 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.10 -10.27 -45.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272746774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.327 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds