Wall clock time and date at job start Wed Apr 1 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32152 * 119.99792 * 2 1 4 4 C 1.32124 * 120.00303 * 180.27489 * 3 2 1 5 5 C 1.38395 * 119.99276 * 359.73846 * 4 3 2 6 6 N 1.32129 * 119.99882 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99603 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99337 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47038 * 90.00215 * 8 7 6 10 10 C 1.48646 * 111.00084 * 290.12577 * 9 8 7 11 11 C 1.54642 * 104.63364 * 201.49077 * 10 9 8 12 12 C 1.53250 * 104.67647 * 23.68066 * 11 10 9 13 13 C 1.53615 * 111.05504 * 239.01799 * 12 11 10 14 14 C 1.54706 * 101.50972 * 262.68393 * 13 12 11 15 15 N 1.46881 * 105.51455 * 335.46933 * 14 13 12 16 16 C 1.46507 * 124.37154 * 196.78826 * 15 14 13 17 17 C 1.53004 * 109.46773 * 90.00435 * 16 15 14 18 18 C 1.50695 * 109.46637 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00546 * 0.27598 * 18 17 16 20 20 C 1.37885 * 119.99721 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47093 * 60.00328 * 22 20 18 24 24 H 1.48495 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47239 * 300.00048 * 22 20 18 26 26 C 1.34756 * 111.25708 * 17.06105 * 15 14 13 27 27 O 1.21278 * 125.13512 * 178.73690 * 26 15 14 28 28 C 1.48798 * 110.99973 * 174.50687 * 9 8 7 29 29 H 1.08998 * 109.47209 * 270.24138 * 1 2 3 30 30 H 1.09005 * 109.47339 * 30.23830 * 1 2 3 31 31 H 1.08999 * 109.46926 * 150.24439 * 1 2 3 32 32 H 1.07995 * 120.00472 * 179.71415 * 4 3 2 33 33 H 1.07991 * 119.99776 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47629 * 330.00408 * 8 7 6 35 35 H 1.09000 * 109.46755 * 209.99814 * 8 7 6 36 36 H 1.08996 * 110.40741 * 82.70085 * 10 9 8 37 37 H 1.08995 * 110.40266 * 320.27930 * 10 9 8 38 38 H 1.09003 * 110.39286 * 264.88295 * 11 10 9 39 39 H 1.08997 * 110.49462 * 142.53496 * 11 10 9 40 40 H 1.08997 * 111.02055 * 144.62343 * 13 12 11 41 41 H 1.09003 * 111.01806 * 20.73748 * 13 12 11 42 42 H 1.08997 * 110.23438 * 216.46202 * 14 13 12 43 43 H 1.08995 * 110.31108 * 94.51899 * 14 13 12 44 44 H 1.09000 * 109.46860 * 330.00633 * 16 15 14 45 45 H 1.08997 * 109.47067 * 209.99984 * 16 15 14 46 46 H 1.08992 * 109.47421 * 60.00163 * 17 16 15 47 47 H 1.08997 * 109.46955 * 299.99616 * 17 16 15 48 48 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 49 49 H 1.09001 * 110.46013 * 39.48479 * 28 9 8 50 50 H 1.09008 * 110.46009 * 276.91608 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4890 1.1446 -0.0055 5 6 4.1809 -0.0539 -0.0058 6 7 3.5202 -1.1982 0.0000 7 6 2.1987 -1.1980 0.0065 8 6 1.4452 -2.5031 0.0124 9 7 1.2071 -2.9248 1.3994 10 6 2.4751 -3.3390 2.0553 11 6 2.0307 -4.2418 3.2295 12 6 0.6486 -4.7611 2.8186 13 6 -0.4198 -4.3600 3.8469 14 6 -0.5167 -5.6420 4.7074 15 7 -0.0636 -6.7347 3.8367 16 6 -0.3110 -8.1554 4.0956 17 6 -1.6314 -8.5702 3.4434 18 6 -1.8861 -10.0313 3.7103 19 1 -1.1794 -10.6055 4.2911 20 6 -3.0245 -10.6338 3.2181 21 7 -3.8878 -9.9334 2.5155 22 14 -3.3399 -12.4451 3.5483 23 1 -3.4171 -12.6751 5.0134 24 1 -4.6215 -12.8478 2.9154 25 1 -2.2317 -13.2526 2.9782 26 6 0.6140 -6.2622 2.7721 27 8 1.1179 -6.9455 1.9061 28 6 0.3515 -4.1412 1.4475 29 1 -0.3633 0.0043 1.0276 30 1 -0.3634 0.8879 -0.5175 31 1 -0.3633 -0.8922 -0.5100 32 1 4.0289 2.0799 -0.0102 33 1 5.2608 -0.0539 -0.0107 34 1 2.0317 -3.2637 -0.5029 35 1 0.4902 -2.3736 -0.4969 36 1 3.0124 -2.4672 2.4285 37 1 3.0975 -3.9006 1.3587 38 1 1.9603 -3.6613 4.1494 39 1 2.7258 -5.0716 3.3572 40 1 -1.3702 -4.1437 3.3592 41 1 -0.0874 -3.5117 4.4454 42 1 -1.5478 -5.8104 5.0182 43 1 0.1314 -5.5618 5.5801 44 1 -0.3681 -8.3241 5.1710 45 1 0.5027 -8.7479 3.6775 46 1 -1.5743 -8.4015 2.3681 47 1 -2.4451 -7.9777 3.8615 48 1 -4.6885 -10.3573 2.1690 49 1 0.6256 -4.8316 0.6499 50 1 -0.7015 -3.8695 1.3724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272746774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:11 Heat of formation + Delta-G solvation = -4.090688 kcal Electronic energy + Delta-G solvation = -30189.708348 eV Core-core repulsion = 26215.714323 eV Total energy + Delta-G solvation = -3973.994025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.32530 -41.95243 -39.20091 -37.50313 -36.02654 -35.45080 -34.95994 -33.55337 -31.72524 -30.57303 -29.43565 -28.87174 -27.70771 -26.85600 -24.61240 -23.99129 -23.63378 -23.51452 -22.11503 -21.62871 -19.95667 -18.78834 -18.68251 -17.69753 -17.32556 -17.19677 -16.77213 -16.70341 -16.32909 -16.09786 -16.03889 -15.50442 -15.27900 -14.92335 -14.72201 -14.51375 -14.33662 -14.21335 -13.93134 -13.74082 -13.65531 -13.49660 -13.40322 -13.27252 -12.90501 -12.78945 -12.61823 -12.57295 -12.51682 -12.45835 -12.24257 -11.99090 -11.97826 -11.91043 -11.73108 -11.57822 -11.42828 -10.69631 -10.59069 -10.08134 -10.00608 -9.62951 -9.55782 -8.24219 -6.36925 -0.18648 0.16591 1.38479 1.42620 1.49624 1.53112 2.11521 2.40341 2.57618 2.93799 3.09079 3.11960 3.23259 3.34752 3.39784 3.49196 3.57357 3.77768 3.92278 4.02249 4.09642 4.22576 4.28555 4.30785 4.38695 4.43023 4.46675 4.50350 4.55515 4.62058 4.64040 4.71053 4.75906 4.80349 4.84607 4.86502 4.89029 4.95464 5.04162 5.08116 5.17660 5.19914 5.32898 5.46032 5.51050 5.58182 5.60519 5.78571 5.82114 6.14643 6.28661 6.36226 6.77927 6.85903 7.19230 7.32654 8.87606 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.002081 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.364391 B =13453.581040 C =13712.907074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.092 3.908 3 N -0.465 5.465 4 C 0.055 3.945 5 C 0.038 3.962 6 N -0.457 5.457 7 C 0.076 3.924 8 C 0.092 3.908 9 N -0.485 5.485 10 C 0.048 3.952 11 C -0.093 4.093 12 C -0.092 4.092 13 C -0.100 4.100 14 C 0.092 3.908 15 N -0.617 5.617 16 C 0.141 3.859 17 C 0.026 3.974 18 C -0.546 4.546 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.931 5.931 22 Si 0.970 3.030 23 H -0.259 1.259 24 H -0.282 1.282 25 H -0.271 1.271 26 C 0.510 3.490 27 O -0.586 6.586 28 C 0.056 3.944 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.202 0.798 33 H 0.197 0.803 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.032 0.968 38 H 0.112 0.888 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.050 0.950 46 H -0.027 1.027 47 H 0.003 0.997 48 H 0.265 0.735 49 H 0.032 0.968 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.597 25.999 0.497 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.048 4.048 3 N -0.181 5.181 4 C -0.105 4.105 5 C -0.122 4.122 6 N -0.172 5.172 7 C -0.064 4.064 8 C -0.037 4.037 9 N -0.209 5.209 10 C -0.080 4.080 11 C -0.131 4.131 12 C -0.096 4.096 13 C -0.137 4.137 14 C -0.030 4.030 15 N -0.348 5.348 16 C 0.019 3.981 17 C -0.012 4.012 18 C -0.585 4.585 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.794 3.206 23 H -0.184 1.184 24 H -0.208 1.208 25 H -0.196 1.196 26 C 0.299 3.701 27 O -0.467 6.467 28 C -0.072 4.072 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.219 0.781 33 H 0.214 0.786 34 H 0.062 0.938 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.051 0.949 38 H 0.131 0.869 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.068 0.932 46 H -0.009 1.009 47 H 0.021 0.979 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.400 25.998 0.272 28.805 hybrid contribution 0.238 -2.095 -0.871 2.281 sum 12.639 23.903 -0.598 27.045 Atomic orbital electron populations 1.20809 0.86283 1.04178 1.04460 1.22344 0.99510 0.88451 0.94502 1.68386 1.10145 1.29337 1.10194 1.24341 0.90338 1.01191 0.94660 1.24257 1.03222 0.88127 0.96578 1.68249 1.08707 1.31551 1.08719 1.21759 0.90486 0.96083 0.98066 1.21159 1.00044 0.91700 0.90831 1.65549 1.11713 1.29395 1.14243 1.23053 0.91583 0.98055 0.95345 1.22192 0.92435 0.98581 0.99917 1.21339 0.99637 0.90114 0.98471 1.22726 0.98150 0.97203 0.95658 1.22483 1.01510 0.85232 0.93779 1.48746 1.53661 1.07604 1.24816 1.21370 0.97363 0.78594 1.00748 1.19188 0.92660 0.95665 0.93723 1.21516 1.06664 0.96049 1.34247 0.91618 1.26017 0.95752 1.03467 0.94561 1.70102 1.11918 1.38488 1.36553 0.85434 0.77394 0.78668 0.79150 1.18389 1.20781 1.19635 1.21152 0.76895 0.91554 0.80538 1.90648 1.50077 1.66165 1.39788 1.22942 0.99803 0.90259 0.94169 0.88867 0.90079 0.89174 0.78118 0.78574 0.93821 0.86573 0.89628 0.94919 0.86922 0.92424 0.89242 0.85367 0.90152 0.88535 0.89056 0.93160 1.00899 0.97863 0.92664 0.94971 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.78 71.24 0.70 -0.64 16 2 C 0.09 1.67 6.78 42.53 0.29 1.95 16 3 N -0.46 -8.46 10.42 -183.30 -1.91 -10.37 16 4 C 0.06 0.71 11.23 84.69 0.95 1.66 16 5 C 0.04 0.53 11.23 84.69 0.95 1.48 16 6 N -0.46 -9.23 10.19 -183.30 -1.87 -11.10 16 7 C 0.08 1.51 5.86 42.53 0.25 1.76 16 8 C 0.09 1.82 4.72 85.56 0.40 2.23 16 9 N -0.49 -10.02 5.36 -886.63 -4.75 -14.78 16 10 C 0.05 1.04 5.82 86.52 0.50 1.54 16 11 C -0.09 -1.99 6.32 31.24 0.20 -1.79 16 12 C -0.09 -2.34 0.83 -52.66 -0.04 -2.38 16 13 C -0.10 -1.91 6.24 31.38 0.20 -1.72 16 14 C 0.09 2.21 7.36 86.89 0.64 2.85 16 15 N -0.62 -22.30 2.94 -818.15 -2.41 -24.71 16 16 C 0.14 6.10 5.89 86.38 0.51 6.61 16 17 C 0.03 1.40 5.30 29.85 0.16 1.55 16 18 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 19 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 20 C 0.00 0.02 5.46 84.66 0.46 0.48 16 21 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 22 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.51 19.29 6.64 87.51 0.58 19.87 16 27 O -0.59 -28.19 17.09 -3.02 -0.05 -28.24 16 28 C 0.06 1.40 5.65 86.06 0.49 1.88 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.01 5.95 -2.39 -0.01 1.00 16 32 H 0.20 1.02 8.06 -2.91 -0.02 0.99 16 33 H 0.20 1.33 8.06 -2.92 -0.02 1.30 16 34 H 0.04 1.02 7.88 -2.39 -0.02 1.01 16 35 H 0.12 1.86 5.93 -2.39 -0.01 1.85 16 36 H 0.09 1.75 8.13 -2.39 -0.02 1.73 16 37 H 0.03 0.85 7.81 -2.39 -0.02 0.83 16 38 H 0.11 1.72 7.32 -2.39 -0.02 1.70 16 39 H 0.06 1.44 7.75 -2.39 -0.02 1.42 16 40 H 0.09 1.68 7.51 -2.39 -0.02 1.66 16 41 H 0.13 1.56 7.42 -2.39 -0.02 1.54 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 45 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 46 H -0.03 -1.74 8.14 -2.39 -0.02 -1.75 16 47 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 49 H 0.03 1.00 7.39 -2.39 -0.02 0.98 16 50 H 0.11 2.32 7.46 -2.38 -0.02 2.30 16 Total: -1.00 -80.91 402.00 -0.29 -81.19 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.93 Total: 12.47 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 7.46 Total: 6.05 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -10.66 Total: -118.12 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.05 Total: -28.24 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -80.91 -0.29 -81.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272746774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.102 kcal (2) G-P(sol) polarization free energy of solvation -80.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds