Wall clock time and date at job start Wed Apr 1 2020 04:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32157 * 119.99937 * 2 1 4 4 C 1.32117 * 120.00067 * 179.76806 * 3 2 1 5 5 C 1.38396 * 120.00092 * 0.50641 * 4 3 2 6 6 N 1.32129 * 119.99079 * 359.74391 * 5 4 3 7 7 C 1.32155 * 120.00371 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99710 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47269 * 95.87418 * 8 7 6 10 10 C 1.48072 * 110.99910 * 290.34580 * 9 8 7 11 11 C 1.54981 * 104.81842 * 213.96932 * 10 9 8 12 12 C 1.55316 * 101.73667 * 36.66397 * 11 10 9 13 13 C 1.46646 * 111.00316 * 169.91608 * 9 8 7 14 14 C 1.53893 * 110.90428 * 2.15426 * 13 9 8 15 15 C 1.54644 * 101.59043 * 263.45593 * 14 13 9 16 16 N 1.46850 * 105.50443 * 335.23231 * 15 14 13 17 17 C 1.46501 * 124.36361 * 196.89948 * 16 15 14 18 18 C 1.53007 * 109.47134 * 269.94840 * 17 16 15 19 19 C 1.50693 * 109.47200 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00089 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00260 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99637 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00197 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47305 * 90.00233 * 23 21 19 25 25 H 1.48498 * 109.47112 * 210.00564 * 23 21 19 26 26 H 1.48502 * 109.47208 * 330.00006 * 23 21 19 27 27 C 1.34651 * 111.26304 * 16.87786 * 16 15 14 28 28 O 1.21289 * 125.07259 * 179.14322 * 27 16 15 29 29 H 1.08999 * 109.47313 * 264.14188 * 1 2 3 30 30 H 1.09002 * 109.46982 * 144.14904 * 1 2 3 31 31 H 1.08999 * 109.47132 * 24.14808 * 1 2 3 32 32 H 1.08003 * 120.00428 * 180.25305 * 4 3 2 33 33 H 1.07999 * 120.00305 * 179.76819 * 5 4 3 34 34 H 1.09001 * 109.47019 * 215.87229 * 8 7 6 35 35 H 1.08998 * 109.47331 * 335.87432 * 8 7 6 36 36 H 1.08998 * 110.36939 * 332.80696 * 10 9 8 37 37 H 1.08995 * 110.37232 * 95.13804 * 10 9 8 38 38 H 1.08997 * 110.97547 * 278.55643 * 11 10 9 39 39 H 1.08996 * 110.97438 * 154.76956 * 11 10 9 40 40 H 1.09002 * 110.74930 * 206.63587 * 12 11 10 41 41 H 1.08997 * 110.74983 * 83.28315 * 12 11 10 42 42 H 1.09004 * 110.99919 * 21.53043 * 14 13 9 43 43 H 1.08996 * 111.00220 * 145.37767 * 14 13 9 44 44 H 1.08995 * 110.23692 * 216.21998 * 15 14 13 45 45 H 1.09004 * 110.23712 * 94.23664 * 15 14 13 46 46 H 1.08992 * 109.47313 * 29.95139 * 17 16 15 47 47 H 1.09005 * 109.47014 * 149.95442 * 17 16 15 48 48 H 1.08996 * 109.46836 * 300.00585 * 18 17 16 49 49 H 1.09005 * 109.46679 * 60.00396 * 18 17 16 50 50 H 0.96995 * 119.99533 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4889 1.1446 0.0046 5 6 4.1810 -0.0539 -0.0011 6 7 3.5202 -1.1981 -0.0061 7 6 2.1987 -1.1981 -0.0061 8 6 1.4452 -2.5032 -0.0124 9 7 1.0776 -2.8630 1.3635 10 6 2.2738 -3.2384 2.1514 11 6 1.7795 -4.3419 3.1209 12 6 0.7635 -5.1108 2.2328 13 6 0.1440 -3.9938 1.3795 14 6 -0.1299 -4.4999 -0.0477 15 6 -1.4491 -3.7686 -0.3889 16 7 -2.0846 -3.4819 0.9035 17 6 -3.4954 -3.1240 1.0700 18 6 -3.6494 -1.6040 0.9855 19 6 -5.1006 -1.2358 1.1573 20 1 -5.8392 -2.0086 1.3118 21 6 -5.4853 0.0876 1.1184 22 7 -4.5859 1.0286 0.9308 23 14 -7.2840 0.5441 1.3321 24 1 -7.5719 0.7607 2.7727 25 1 -7.5716 1.7900 0.5770 26 1 -8.1384 -0.5556 0.8163 27 6 -1.2034 -3.5910 1.9158 28 8 -1.4576 -3.3939 3.0853 29 1 -0.3634 -0.1049 1.0223 30 1 -0.3633 -0.8330 -0.6019 31 1 -0.3633 0.9377 -0.4204 32 1 4.0290 2.0799 0.0088 33 1 5.2610 -0.0539 -0.0011 34 1 0.5424 -2.3985 -0.6141 35 1 2.0758 -3.2847 -0.4362 36 1 3.0521 -3.6296 1.4964 37 1 2.6441 -2.3797 2.7113 38 1 1.2864 -3.9058 3.9897 39 1 2.6009 -4.9906 3.4249 40 1 0.0033 -5.5948 2.8461 41 1 1.2746 -5.8391 1.6033 42 1 0.6686 -4.2027 -0.7276 43 1 -0.2684 -5.5810 -0.0590 44 1 -2.0916 -4.4111 -0.9909 45 1 -1.2390 -2.8401 -0.9200 46 1 -4.0847 -3.5932 0.2823 47 1 -3.8461 -3.4712 2.0419 48 1 -3.0601 -1.1349 1.7732 49 1 -3.2987 -1.2569 0.0135 50 1 -4.8566 1.9596 0.9030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272746887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:35 Heat of formation + Delta-G solvation = 36.824052 kcal Electronic energy + Delta-G solvation = -31955.699924 eV Core-core repulsion = 27983.480095 eV Total energy + Delta-G solvation = -3972.219829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.56156 -40.80420 -37.86025 -35.95913 -34.57763 -34.08386 -33.59417 -31.90398 -31.23075 -29.14339 -28.04141 -27.80590 -26.61142 -25.03373 -23.52065 -23.12968 -22.65648 -21.94395 -21.07081 -19.96069 -18.59433 -17.81567 -17.20877 -16.60401 -16.34076 -16.01254 -15.50307 -15.24942 -15.09670 -14.81626 -14.55796 -14.29842 -13.90161 -13.73725 -13.50524 -13.11734 -12.90702 -12.68327 -12.65659 -12.53988 -12.39846 -12.29354 -12.11194 -11.96698 -11.60582 -11.52322 -11.26979 -11.25179 -11.08876 -11.00608 -10.93417 -10.87863 -10.79574 -10.64980 -9.97458 -9.82706 -9.51816 -9.17591 -9.08399 -9.04512 -8.34553 -8.30369 -7.98567 -5.99268 -4.02358 0.72677 1.11478 2.87779 3.33709 3.39773 3.41643 3.51409 3.61348 3.88807 4.09413 4.19374 4.22200 4.36558 4.47358 4.48035 4.61096 4.69778 4.78314 4.92121 4.97742 5.09105 5.10888 5.15893 5.34257 5.35551 5.37153 5.42314 5.46366 5.51288 5.63329 5.72055 5.73993 5.81323 5.87214 5.96508 5.97451 6.07223 6.07822 6.21335 6.27088 6.47782 6.60225 6.76599 6.80664 6.84123 7.05701 7.27781 7.54382 7.70383 7.79452 7.88811 8.00948 8.37169 8.74886 9.03996 9.61483 11.11781 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.004016 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.531782 B = 6970.899221 C = 8929.891550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.117 3.883 3 N -0.441 5.441 4 C 0.053 3.947 5 C 0.031 3.969 6 N -0.432 5.432 7 C 0.080 3.920 8 C 0.098 3.902 9 N -0.496 5.496 10 C 0.050 3.950 11 C -0.128 4.128 12 C -0.117 4.117 13 C 0.072 3.928 14 C -0.164 4.164 15 C 0.103 3.897 16 N -0.609 5.609 17 C 0.129 3.871 18 C 0.014 3.986 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.539 3.461 28 O -0.520 6.520 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.022 0.978 49 H 0.017 0.983 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.763 -9.890 -5.154 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.023 4.023 3 N -0.156 5.156 4 C -0.107 4.107 5 C -0.129 4.129 6 N -0.147 5.147 7 C -0.062 4.062 8 C -0.030 4.030 9 N -0.221 5.221 10 C -0.078 4.078 11 C -0.166 4.166 12 C -0.156 4.156 13 C -0.022 4.022 14 C -0.203 4.203 15 C -0.020 4.020 16 N -0.343 5.343 17 C 0.009 3.991 18 C -0.023 4.023 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.528 5.528 23 Si 0.719 3.281 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.324 3.676 28 O -0.394 6.394 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.041 0.959 49 H 0.035 0.965 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.292 -9.132 -4.332 20.899 hybrid contribution -0.429 -0.016 -0.356 0.558 sum 17.863 -9.148 -4.687 20.609 Atomic orbital electron populations 1.20761 0.86184 1.03799 1.04851 1.22315 0.99028 0.88418 0.92551 1.68414 1.08683 1.29366 1.09182 1.23775 0.91039 0.99731 0.96172 1.23616 1.01533 0.88873 0.98901 1.68177 1.08218 1.30032 1.08258 1.21811 0.90225 0.96200 0.97926 1.21348 0.98719 0.91662 0.91289 1.63154 1.12405 1.35459 1.11046 1.23111 0.91194 0.98065 0.95386 1.22750 0.98326 0.96726 0.98761 1.22602 0.98931 0.96209 0.97858 1.21913 0.93542 0.90905 0.95808 1.23375 0.98812 1.01630 0.96461 1.22057 0.93404 0.99568 0.87018 1.48517 1.11199 1.68130 1.06430 1.21816 0.76340 0.99863 1.01105 1.19383 0.97087 0.88248 0.97627 1.21077 0.92845 0.92221 1.50072 0.92643 1.24964 0.97375 0.96564 0.95145 1.69962 1.33143 1.00171 1.49507 0.86606 0.85339 0.77897 0.78215 1.20642 1.21248 1.19890 1.19999 0.85475 0.76690 0.85473 1.90678 1.81430 1.50283 1.17033 0.88562 0.90500 0.90044 0.81658 0.81721 0.87769 0.91979 0.92601 0.90586 0.89887 0.90701 0.90011 0.90602 0.88237 0.89303 0.90370 0.91250 0.91768 0.91220 0.95921 0.96470 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.66 36.00 0.35 -1.24 16 2 C 0.12 1.76 6.78 -82.41 -0.56 1.20 16 3 N -0.44 -6.53 10.42 -9.29 -0.10 -6.63 16 4 C 0.05 0.59 11.23 -17.37 -0.19 0.40 16 5 C 0.03 0.31 11.23 -17.37 -0.19 0.12 16 6 N -0.43 -5.34 10.40 -9.29 -0.10 -5.43 16 7 C 0.08 1.06 5.79 -82.42 -0.48 0.59 16 8 C 0.10 1.16 3.18 -4.98 -0.02 1.14 16 9 N -0.50 -6.69 4.84 -218.85 -1.06 -7.75 16 10 C 0.05 0.60 6.19 -2.13 -0.01 0.58 16 11 C -0.13 -1.44 7.08 -24.46 -0.17 -1.62 16 12 C -0.12 -1.32 5.86 -25.19 -0.15 -1.47 16 13 C 0.07 0.95 0.99 -132.20 -0.13 0.82 16 14 C -0.16 -1.65 5.51 -25.40 -0.14 -1.79 16 15 C 0.10 1.29 6.99 -2.99 -0.02 1.27 16 16 N -0.61 -10.57 2.94 -172.49 -0.51 -11.08 16 17 C 0.13 2.65 5.88 -4.04 -0.02 2.62 16 18 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 19 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 20 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 23 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.54 9.82 6.97 -11.13 -0.08 9.74 16 28 O -0.52 -11.74 17.44 5.55 0.10 -11.65 16 29 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 30 H 0.08 1.13 5.67 -51.93 -0.29 0.84 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.10 1.20 3.25 -51.93 -0.17 1.03 16 35 H 0.06 0.63 6.80 -51.93 -0.35 0.28 16 36 H 0.06 0.61 7.62 -51.93 -0.40 0.21 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 41 H 0.08 0.66 7.81 -51.93 -0.41 0.26 16 42 H 0.10 0.82 4.85 -51.93 -0.25 0.57 16 43 H 0.09 0.74 7.83 -51.93 -0.41 0.33 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.87 6.15 -51.93 -0.32 0.55 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.07 1.53 7.95 -51.93 -0.41 1.12 16 48 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -34.64 394.55 -9.99 -44.63 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.60 Total: 1.77 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.69 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -1.02 Total: -56.59 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.10 Total: -11.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.64 -9.99 -44.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272746887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.450 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds