Wall clock time and date at job start Wed Apr 1 2020 04:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32157 * 119.99937 * 2 1 4 4 C 1.32117 * 120.00067 * 179.76806 * 3 2 1 5 5 C 1.38396 * 120.00092 * 0.50641 * 4 3 2 6 6 N 1.32129 * 119.99079 * 359.74391 * 5 4 3 7 7 C 1.32155 * 120.00371 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99710 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47269 * 95.87418 * 8 7 6 10 10 C 1.48072 * 110.99910 * 290.34580 * 9 8 7 11 11 C 1.54981 * 104.81842 * 213.96932 * 10 9 8 12 12 C 1.55316 * 101.73667 * 36.66397 * 11 10 9 13 13 C 1.46646 * 111.00316 * 169.91608 * 9 8 7 14 14 C 1.53893 * 110.90428 * 2.15426 * 13 9 8 15 15 C 1.54644 * 101.59043 * 263.45593 * 14 13 9 16 16 N 1.46850 * 105.50443 * 335.23231 * 15 14 13 17 17 C 1.46501 * 124.36361 * 196.89948 * 16 15 14 18 18 C 1.53007 * 109.47134 * 269.94840 * 17 16 15 19 19 C 1.50693 * 109.47200 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00089 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00260 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99637 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00197 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47305 * 90.00233 * 23 21 19 25 25 H 1.48498 * 109.47112 * 210.00564 * 23 21 19 26 26 H 1.48502 * 109.47208 * 330.00006 * 23 21 19 27 27 C 1.34651 * 111.26304 * 16.87786 * 16 15 14 28 28 O 1.21289 * 125.07259 * 179.14322 * 27 16 15 29 29 H 1.08999 * 109.47313 * 264.14188 * 1 2 3 30 30 H 1.09002 * 109.46982 * 144.14904 * 1 2 3 31 31 H 1.08999 * 109.47132 * 24.14808 * 1 2 3 32 32 H 1.08003 * 120.00428 * 180.25305 * 4 3 2 33 33 H 1.07999 * 120.00305 * 179.76819 * 5 4 3 34 34 H 1.09001 * 109.47019 * 215.87229 * 8 7 6 35 35 H 1.08998 * 109.47331 * 335.87432 * 8 7 6 36 36 H 1.08998 * 110.36939 * 332.80696 * 10 9 8 37 37 H 1.08995 * 110.37232 * 95.13804 * 10 9 8 38 38 H 1.08997 * 110.97547 * 278.55643 * 11 10 9 39 39 H 1.08996 * 110.97438 * 154.76956 * 11 10 9 40 40 H 1.09002 * 110.74930 * 206.63587 * 12 11 10 41 41 H 1.08997 * 110.74983 * 83.28315 * 12 11 10 42 42 H 1.09004 * 110.99919 * 21.53043 * 14 13 9 43 43 H 1.08996 * 111.00220 * 145.37767 * 14 13 9 44 44 H 1.08995 * 110.23692 * 216.21998 * 15 14 13 45 45 H 1.09004 * 110.23712 * 94.23664 * 15 14 13 46 46 H 1.08992 * 109.47313 * 29.95139 * 17 16 15 47 47 H 1.09005 * 109.47014 * 149.95442 * 17 16 15 48 48 H 1.08996 * 109.46836 * 300.00585 * 18 17 16 49 49 H 1.09005 * 109.46679 * 60.00396 * 18 17 16 50 50 H 0.96995 * 119.99533 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4889 1.1446 0.0046 5 6 4.1810 -0.0539 -0.0011 6 7 3.5202 -1.1981 -0.0061 7 6 2.1987 -1.1981 -0.0061 8 6 1.4452 -2.5032 -0.0124 9 7 1.0776 -2.8630 1.3635 10 6 2.2738 -3.2384 2.1514 11 6 1.7795 -4.3419 3.1209 12 6 0.7635 -5.1108 2.2328 13 6 0.1440 -3.9938 1.3795 14 6 -0.1299 -4.4999 -0.0477 15 6 -1.4491 -3.7686 -0.3889 16 7 -2.0846 -3.4819 0.9035 17 6 -3.4954 -3.1240 1.0700 18 6 -3.6494 -1.6040 0.9855 19 6 -5.1006 -1.2358 1.1573 20 1 -5.8392 -2.0086 1.3118 21 6 -5.4853 0.0876 1.1184 22 7 -4.5859 1.0286 0.9308 23 14 -7.2840 0.5441 1.3321 24 1 -7.5719 0.7607 2.7727 25 1 -7.5716 1.7900 0.5770 26 1 -8.1384 -0.5556 0.8163 27 6 -1.2034 -3.5910 1.9158 28 8 -1.4576 -3.3939 3.0853 29 1 -0.3634 -0.1049 1.0223 30 1 -0.3633 -0.8330 -0.6019 31 1 -0.3633 0.9377 -0.4204 32 1 4.0290 2.0799 0.0088 33 1 5.2610 -0.0539 -0.0011 34 1 0.5424 -2.3985 -0.6141 35 1 2.0758 -3.2847 -0.4362 36 1 3.0521 -3.6296 1.4964 37 1 2.6441 -2.3797 2.7113 38 1 1.2864 -3.9058 3.9897 39 1 2.6009 -4.9906 3.4249 40 1 0.0033 -5.5948 2.8461 41 1 1.2746 -5.8391 1.6033 42 1 0.6686 -4.2027 -0.7276 43 1 -0.2684 -5.5810 -0.0590 44 1 -2.0916 -4.4111 -0.9909 45 1 -1.2390 -2.8401 -0.9200 46 1 -4.0847 -3.5932 0.2823 47 1 -3.8461 -3.4712 2.0419 48 1 -3.0601 -1.1349 1.7732 49 1 -3.2987 -1.2569 0.0135 50 1 -4.8566 1.9596 0.9030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272746887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:34 Heat of formation + Delta-G solvation = 11.397094 kcal Electronic energy + Delta-G solvation = -31956.802519 eV Core-core repulsion = 27983.480095 eV Total energy + Delta-G solvation = -3973.322424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.59943 -41.86577 -39.11343 -37.39552 -35.62134 -35.47269 -35.08152 -33.52197 -32.26163 -30.78103 -29.15901 -28.88602 -27.62422 -26.83572 -24.64993 -24.17962 -23.75663 -23.40442 -22.22639 -21.22278 -19.85858 -18.80929 -18.66713 -18.14523 -17.47858 -17.14365 -16.73754 -16.61122 -16.22858 -16.20518 -15.88021 -15.60083 -14.99234 -14.83709 -14.79748 -14.44609 -14.25249 -14.16320 -13.96101 -13.80775 -13.62041 -13.57004 -13.49382 -13.10149 -12.91778 -12.84945 -12.67450 -12.58753 -12.42740 -12.22930 -12.06932 -12.00500 -11.96836 -11.85526 -11.70223 -11.68119 -11.35686 -10.80973 -10.56889 -10.06866 -10.04352 -9.51707 -9.31531 -8.20175 -6.32529 -0.22328 0.13800 1.38934 1.41172 1.51349 1.56656 2.17613 2.42495 2.59902 2.97010 3.10200 3.13254 3.20593 3.29384 3.41578 3.50935 3.67084 3.75071 3.86635 3.98518 4.07260 4.20637 4.22384 4.25343 4.37153 4.39781 4.46494 4.48375 4.53843 4.64611 4.65525 4.69003 4.74176 4.77083 4.81674 4.88988 4.91120 4.96666 5.03341 5.08914 5.12454 5.28665 5.38371 5.45233 5.50863 5.64172 5.82381 5.85880 5.95474 6.19996 6.32508 6.37109 6.82742 6.83293 7.32149 7.37109 8.91101 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.004016 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.531782 B = 6970.899221 C = 8929.891550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 N -0.476 5.476 4 C 0.051 3.949 5 C 0.047 3.953 6 N -0.436 5.436 7 C 0.078 3.922 8 C 0.102 3.898 9 N -0.527 5.527 10 C 0.057 3.943 11 C -0.125 4.125 12 C -0.111 4.111 13 C 0.077 3.923 14 C -0.146 4.146 15 C 0.092 3.908 16 N -0.614 5.614 17 C 0.142 3.858 18 C 0.030 3.970 19 C -0.545 4.545 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.279 1.279 25 H -0.281 1.281 26 H -0.257 1.257 27 C 0.521 3.479 28 O -0.581 6.581 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.202 0.798 33 H 0.211 0.789 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.049 0.951 48 H -0.030 1.030 49 H 0.003 0.997 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.975 -12.122 -7.312 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 N -0.191 5.191 4 C -0.110 4.110 5 C -0.114 4.114 6 N -0.151 5.151 7 C -0.062 4.062 8 C -0.026 4.026 9 N -0.253 5.253 10 C -0.069 4.069 11 C -0.163 4.163 12 C -0.150 4.150 13 C -0.016 4.016 14 C -0.184 4.184 15 C -0.030 4.030 16 N -0.346 5.346 17 C 0.021 3.979 18 C -0.008 4.008 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.789 3.211 24 H -0.205 1.205 25 H -0.206 1.206 26 H -0.180 1.180 27 C 0.309 3.691 28 O -0.460 6.460 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.219 0.781 33 H 0.228 0.772 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.124 0.876 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.067 0.933 48 H -0.012 1.012 49 H 0.021 0.979 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.497 -11.408 -6.533 24.351 hybrid contribution -0.998 0.826 0.354 1.343 sum 19.499 -10.582 -6.179 23.030 Atomic orbital electron populations 1.20457 0.88375 1.03124 1.02073 1.22030 0.97930 0.89727 0.95581 1.68309 1.10912 1.29845 1.10084 1.24438 0.89759 1.01926 0.94904 1.24389 1.03469 0.87827 0.95681 1.68286 1.07345 1.30896 1.08617 1.21880 0.90834 0.95926 0.97582 1.21377 0.99020 0.91784 0.90392 1.62897 1.13375 1.36487 1.12492 1.23040 0.91072 0.97394 0.95436 1.22725 0.99122 0.97001 0.97471 1.22654 0.98465 0.96013 0.97854 1.21785 0.90486 0.91312 0.98007 1.23439 0.97694 1.03016 0.94222 1.22430 0.95206 1.00520 0.84818 1.48594 1.09993 1.67353 1.08691 1.21367 0.79301 0.96263 1.01017 1.19144 0.95397 0.91566 0.94704 1.21547 0.94025 0.92859 1.49907 0.91730 1.25938 1.02352 0.96518 0.94598 1.70119 1.35594 1.00548 1.50422 0.85465 0.79501 0.78095 0.78090 1.20516 1.20601 1.18044 1.21143 0.87746 0.75456 0.84793 1.90624 1.82846 1.52806 1.19679 0.92903 0.89644 0.91882 0.78137 0.77195 0.88007 0.89008 0.90192 0.92787 0.93515 0.87511 0.91676 0.86318 0.85471 0.86165 0.87610 0.91602 0.89002 0.93279 1.01178 0.97857 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.97 9.66 71.24 0.69 -2.28 16 2 C 0.09 2.70 6.78 42.53 0.29 2.98 16 3 N -0.48 -14.32 10.42 -183.29 -1.91 -16.23 16 4 C 0.05 1.03 11.23 84.69 0.95 1.98 16 5 C 0.05 0.81 11.23 84.69 0.95 1.76 16 6 N -0.44 -9.62 10.40 -183.29 -1.91 -11.52 16 7 C 0.08 2.00 5.79 42.53 0.25 2.25 16 8 C 0.10 2.24 3.18 85.56 0.27 2.51 16 9 N -0.53 -14.02 4.84 -846.32 -4.10 -18.12 16 10 C 0.06 1.30 6.19 86.75 0.54 1.84 16 11 C -0.13 -2.70 7.08 32.07 0.23 -2.47 16 12 C -0.11 -2.28 5.86 31.59 0.18 -2.09 16 13 C 0.08 1.96 0.99 3.28 0.00 1.97 16 14 C -0.15 -2.42 5.51 31.46 0.17 -2.25 16 15 C 0.09 2.17 6.99 86.87 0.61 2.78 16 16 N -0.61 -21.96 2.94 -818.11 -2.41 -24.36 16 17 C 0.14 6.11 5.88 86.38 0.51 6.62 16 18 C 0.03 1.63 5.30 29.85 0.16 1.79 16 19 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 20 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 21 C 0.00 0.26 5.46 84.66 0.46 0.72 16 22 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 23 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 26 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 27 C 0.52 19.92 6.97 87.62 0.61 20.53 16 28 O -0.58 -28.51 17.44 -3.06 -0.05 -28.56 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.09 2.77 5.67 -2.39 -0.01 2.76 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.20 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.21 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.10 2.24 3.25 -2.39 -0.01 2.23 16 35 H 0.09 1.47 6.80 -2.39 -0.02 1.45 16 36 H 0.08 1.43 7.62 -2.39 -0.02 1.42 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.57 7.79 -2.39 -0.02 1.56 16 41 H 0.12 1.45 7.81 -2.39 -0.02 1.43 16 42 H 0.13 1.48 4.85 -2.38 -0.01 1.47 16 43 H 0.12 1.34 7.83 -2.39 -0.02 1.32 16 44 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 1.61 6.15 -2.39 -0.01 1.59 16 46 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 47 H 0.05 2.29 7.95 -2.38 -0.02 2.27 16 48 H -0.03 -1.95 8.14 -2.39 -0.02 -1.97 16 49 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 50 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -84.56 394.55 -0.01 -84.58 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.95 Total: 17.26 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 7.10 Total: 7.28 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -10.04 Total: -127.77 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -84.56 -0.01 -84.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272746887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.975 kcal (2) G-P(sol) polarization free energy of solvation -84.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds