Wall clock time and date at job start Wed Apr 1 2020 04:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38392 * 120.00090 * 2 1 4 4 N 1.32124 * 119.99422 * 179.76942 * 3 2 1 5 5 C 1.32151 * 120.00302 * 0.51211 * 4 3 2 6 6 C 1.50694 * 119.99927 * 179.76581 * 5 4 3 7 7 N 1.46902 * 109.47441 * 274.72514 * 6 5 4 8 8 C 1.48074 * 110.99780 * 57.79197 * 7 6 5 9 9 C 1.54975 * 104.82082 * 146.02155 * 8 7 6 10 10 C 1.55308 * 101.74176 * 323.34497 * 9 8 7 11 11 C 1.46653 * 111.00289 * 178.21577 * 7 6 5 12 12 C 1.53884 * 110.90099 * 357.85564 * 11 7 6 13 13 C 1.54640 * 101.59256 * 96.52596 * 12 11 7 14 14 N 1.46845 * 105.50656 * 24.77040 * 13 12 11 15 15 C 1.46497 * 124.37048 * 163.12436 * 14 13 12 16 16 C 1.52997 * 109.46957 * 270.02253 * 15 14 13 17 17 C 1.50707 * 109.46984 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00126 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00097 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00003 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47215 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47233 * 120.00212 * 21 19 17 24 24 H 1.48502 * 109.46934 * 240.00068 * 21 19 17 25 25 C 1.34669 * 111.26063 * 343.12110 * 14 13 12 26 26 O 1.21277 * 125.06988 * 181.10922 * 25 14 13 27 27 C 1.38342 * 120.00285 * 359.49302 * 5 4 3 28 28 N 1.32125 * 120.00231 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46450 * 269.97141 * 1 2 3 30 30 H 1.08999 * 109.47233 * 29.97181 * 1 2 3 31 31 H 1.09000 * 109.47218 * 149.97308 * 1 2 3 32 32 H 1.07998 * 119.99816 * 0.03218 * 3 2 1 33 33 H 1.08998 * 109.47188 * 154.72753 * 6 5 4 34 34 H 1.08998 * 109.47738 * 34.72329 * 6 5 4 35 35 H 1.09002 * 110.36692 * 264.85851 * 8 7 6 36 36 H 1.08991 * 110.37107 * 27.18333 * 8 7 6 37 37 H 1.09003 * 110.96996 * 81.45309 * 9 8 7 38 38 H 1.09003 * 110.97320 * 205.19066 * 9 8 7 39 39 H 1.09000 * 110.74645 * 276.70861 * 10 9 8 40 40 H 1.08997 * 110.74914 * 153.36057 * 10 9 8 41 41 H 1.09001 * 110.99934 * 214.60199 * 12 11 7 42 42 H 1.09002 * 111.00116 * 338.41098 * 12 11 7 43 43 H 1.09001 * 110.24026 * 143.77986 * 13 12 11 44 44 H 1.09004 * 110.23866 * 265.75916 * 13 12 11 45 45 H 1.08995 * 109.47032 * 30.02741 * 15 14 13 46 46 H 1.09001 * 109.47246 * 150.02432 * 15 14 13 47 47 H 1.08989 * 109.47278 * 299.99897 * 16 15 14 48 48 H 1.08997 * 109.47334 * 60.00400 * 16 15 14 49 49 H 0.97000 * 120.00228 * 179.97438 * 20 19 17 50 50 H 1.07995 * 120.00318 * 180.27717 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1984 0.0046 5 6 4.1810 0.0539 -0.0010 6 6 5.6879 0.0538 -0.0011 7 7 6.1776 0.1747 -1.3808 8 6 5.6598 1.4050 -2.0218 9 6 6.7995 1.8715 -2.9626 10 6 8.0618 1.5137 -2.1316 11 6 7.6430 0.2205 -1.4164 12 6 8.2281 0.1820 0.0064 13 6 8.5510 -1.3216 0.1689 14 7 8.7318 -1.8340 -1.1953 15 6 9.3872 -3.1028 -1.5220 16 6 10.8855 -2.8661 -1.7218 17 6 11.5599 -4.1715 -2.0574 18 1 10.9779 -5.0790 -2.1221 19 6 12.9196 -4.2070 -2.2828 20 7 13.6282 -3.1019 -2.2045 21 14 13.7553 -5.8248 -2.6994 22 1 12.7440 -6.9119 -2.7264 23 1 14.4030 -5.7188 -4.0315 24 1 14.7833 -6.1298 -1.6720 25 6 8.2172 -0.9872 -2.1072 26 8 8.2126 -1.1725 -3.3057 27 6 3.4893 -1.1442 -0.0011 28 7 2.1677 -1.1442 -0.0005 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6590 2.1338 0.0005 33 1 6.0513 -0.8776 0.4331 34 1 6.0514 0.8956 0.5883 35 1 4.7602 1.1837 -2.5962 36 1 5.4530 2.1663 -1.2698 37 1 6.7810 1.3186 -3.9018 38 1 6.7417 2.9450 -3.1430 39 1 8.2844 2.2994 -1.4097 40 1 8.9160 1.3345 -2.7846 41 1 9.1334 0.7854 0.0729 42 1 7.4906 0.5054 0.7410 43 1 9.4676 -1.4503 0.7446 44 1 7.7227 -1.8344 0.6578 45 1 9.2366 -3.8101 -0.7066 46 1 8.9580 -3.5081 -2.4384 47 1 11.0361 -2.1589 -2.5373 48 1 11.3147 -2.4610 -0.8055 49 1 14.5849 -3.1269 -2.3627 50 1 4.0292 -2.0795 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272815160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:39 Heat of formation + Delta-G solvation = 34.849399 kcal Electronic energy + Delta-G solvation = -30727.890703 eV Core-core repulsion = 26755.585247 eV Total energy + Delta-G solvation = -3972.305456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.68128 -40.93085 -37.90940 -35.92239 -35.10382 -33.66320 -33.58721 -32.12242 -31.76554 -29.16387 -28.75923 -27.72109 -25.67755 -24.99135 -24.78061 -23.47667 -22.52551 -21.83674 -21.12563 -19.99828 -18.53687 -18.05234 -17.12147 -16.74580 -16.44820 -16.14180 -15.71767 -15.38742 -15.16292 -14.95515 -14.50123 -14.45471 -14.07140 -13.82833 -13.46111 -13.27942 -13.12328 -13.08141 -12.84819 -12.69707 -12.60528 -12.49011 -12.23703 -11.94856 -11.86998 -11.78740 -11.45918 -11.35800 -11.20679 -10.99741 -10.94094 -10.89206 -10.73079 -10.66114 -9.98092 -9.86147 -9.52136 -9.40189 -9.32945 -9.16101 -8.38199 -8.34469 -7.96695 -6.02006 -4.05158 0.43803 0.84010 2.88519 3.31102 3.32935 3.38436 3.42293 3.53904 3.64837 3.84735 4.07484 4.12851 4.25788 4.31893 4.46128 4.51983 4.60016 4.71751 4.76194 4.86049 4.94030 5.06597 5.12435 5.13904 5.19198 5.23407 5.27664 5.31956 5.34347 5.48440 5.54038 5.56874 5.71786 5.75809 5.79773 5.85873 5.92731 6.01897 6.06977 6.09443 6.24756 6.50613 6.70499 6.74545 6.83291 6.99744 7.06594 7.49509 7.53888 7.68861 7.88091 7.98370 8.34881 8.76738 9.01978 9.58941 11.09426 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002438 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.956412 B =11483.673349 C =12258.865708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.074 3.926 3 C 0.051 3.949 4 N -0.429 5.429 5 C 0.079 3.921 6 C 0.097 3.903 7 N -0.498 5.498 8 C 0.048 3.952 9 C -0.128 4.128 10 C -0.119 4.119 11 C 0.071 3.929 12 C -0.166 4.166 13 C 0.105 3.895 14 N -0.610 5.610 15 C 0.129 3.871 16 C 0.012 3.988 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.540 3.460 26 O -0.521 6.521 27 C 0.079 3.921 28 N -0.439 5.439 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.020 0.980 48 H 0.017 0.983 49 H 0.260 0.740 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.564 12.868 9.064 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.067 4.067 3 C -0.110 4.110 4 N -0.144 5.144 5 C -0.062 4.062 6 C -0.031 4.031 7 N -0.223 5.223 8 C -0.079 4.079 9 C -0.166 4.166 10 C -0.157 4.157 11 C -0.022 4.022 12 C -0.204 4.204 13 C -0.019 4.019 14 N -0.344 5.344 15 C 0.009 3.991 16 C -0.026 4.026 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.325 3.675 26 O -0.396 6.396 27 C -0.081 4.081 28 N -0.155 5.155 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.184 0.816 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.039 0.961 48 H 0.035 0.965 49 H 0.070 0.930 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -23.515 12.281 8.124 27.745 hybrid contribution 0.949 -0.221 0.301 1.019 sum -22.567 12.060 8.425 26.938 Atomic orbital electron populations 1.20682 0.87786 1.03978 1.03407 1.22353 0.98519 0.89814 0.96007 1.23565 0.90565 0.99138 0.97745 1.68249 1.08670 1.29383 1.08075 1.22056 0.97513 0.89768 0.96821 1.21390 0.87263 1.03182 0.91276 1.63401 1.05167 1.38581 1.15166 1.23117 0.97913 0.89971 0.96928 1.22752 0.93539 1.01005 0.99306 1.22612 0.99425 0.94593 0.99101 1.21897 0.88116 0.96234 0.95922 1.23386 1.02921 0.97531 0.96585 1.22024 1.01793 0.92755 0.85331 1.48532 1.57623 1.21982 1.06225 1.21783 0.95793 0.81323 1.00163 1.19411 0.88195 0.97590 0.97440 1.21132 0.92851 0.94044 1.47887 0.92416 1.25006 0.97554 0.96441 0.95346 1.69982 1.06841 1.26714 1.49663 0.86499 0.79475 0.83793 0.78020 1.19645 1.20965 1.21018 1.19985 0.77396 0.83855 0.86310 1.90669 1.58225 1.76740 1.13936 1.23622 0.90231 0.99497 0.94800 1.68348 1.08760 1.29290 1.09075 0.90034 0.90234 0.90134 0.81556 0.88176 0.91314 0.90906 0.91947 0.90004 0.90670 0.90514 0.89687 0.89052 0.88074 0.89978 0.91713 0.91663 0.91106 0.96136 0.96503 0.93017 0.81212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.19 36.01 0.37 -0.15 16 2 C 0.07 0.63 6.79 -82.41 -0.56 0.07 16 3 C 0.05 0.41 10.88 -17.37 -0.19 0.22 16 4 N -0.43 -4.29 9.20 -9.29 -0.09 -4.38 16 5 C 0.08 0.81 5.67 -82.42 -0.47 0.34 16 6 C 0.10 0.96 3.82 -4.98 -0.02 0.94 16 7 N -0.50 -6.23 4.94 -218.86 -1.08 -7.31 16 8 C 0.05 0.55 5.50 -2.13 -0.01 0.54 16 9 C -0.13 -1.51 7.08 -24.46 -0.17 -1.68 16 10 C -0.12 -1.51 5.86 -25.20 -0.15 -1.66 16 11 C 0.07 0.98 0.99 -132.20 -0.13 0.85 16 12 C -0.17 -1.83 5.52 -25.41 -0.14 -1.97 16 13 C 0.10 1.37 7.02 -2.99 -0.02 1.35 16 14 N -0.61 -11.07 2.94 -172.51 -0.51 -11.58 16 15 C 0.13 2.75 5.88 -4.05 -0.02 2.73 16 16 C 0.01 0.30 5.30 -27.88 -0.15 0.16 16 17 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 21 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.54 10.23 6.97 -11.12 -0.08 10.15 16 26 O -0.52 -12.13 17.43 5.56 0.10 -12.03 16 27 C 0.08 0.82 10.86 -17.37 -0.19 0.63 16 28 N -0.44 -4.73 10.42 -9.29 -0.10 -4.83 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.10 0.90 5.88 -51.93 -0.31 0.59 16 34 H 0.07 0.61 6.28 -51.93 -0.33 0.28 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.66 7.13 -51.93 -0.37 0.29 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.79 7.81 -51.93 -0.41 0.39 16 40 H 0.08 1.27 7.79 -51.93 -0.40 0.86 16 41 H 0.09 0.98 7.83 -51.93 -0.41 0.57 16 42 H 0.10 0.84 4.65 -51.93 -0.24 0.60 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.69 6.82 -51.93 -0.35 0.34 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.61 7.93 -51.93 -0.41 1.20 16 47 H 0.02 0.60 8.14 -51.94 -0.42 0.18 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 50 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -35.66 397.61 -10.14 -45.81 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.84 Total: -1.14 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.34 Total: -1.00 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -1.03 Total: -54.40 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.10 Total: -12.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.66 -10.14 -45.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.657 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds