Wall clock time and date at job start Wed Apr 1 2020 04:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38392 * 120.00090 * 2 1 4 4 N 1.32124 * 119.99422 * 179.76942 * 3 2 1 5 5 C 1.32151 * 120.00302 * 0.51211 * 4 3 2 6 6 C 1.50694 * 119.99927 * 179.76581 * 5 4 3 7 7 N 1.46902 * 109.47441 * 274.72514 * 6 5 4 8 8 C 1.48074 * 110.99780 * 57.79197 * 7 6 5 9 9 C 1.54975 * 104.82082 * 146.02155 * 8 7 6 10 10 C 1.55308 * 101.74176 * 323.34497 * 9 8 7 11 11 C 1.46653 * 111.00289 * 178.21577 * 7 6 5 12 12 C 1.53884 * 110.90099 * 357.85564 * 11 7 6 13 13 C 1.54640 * 101.59256 * 96.52596 * 12 11 7 14 14 N 1.46845 * 105.50656 * 24.77040 * 13 12 11 15 15 C 1.46497 * 124.37048 * 163.12436 * 14 13 12 16 16 C 1.52997 * 109.46957 * 270.02253 * 15 14 13 17 17 C 1.50707 * 109.46984 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00126 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00097 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00003 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47215 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47233 * 120.00212 * 21 19 17 24 24 H 1.48502 * 109.46934 * 240.00068 * 21 19 17 25 25 C 1.34669 * 111.26063 * 343.12110 * 14 13 12 26 26 O 1.21277 * 125.06988 * 181.10922 * 25 14 13 27 27 C 1.38342 * 120.00285 * 359.49302 * 5 4 3 28 28 N 1.32125 * 120.00231 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46450 * 269.97141 * 1 2 3 30 30 H 1.08999 * 109.47233 * 29.97181 * 1 2 3 31 31 H 1.09000 * 109.47218 * 149.97308 * 1 2 3 32 32 H 1.07998 * 119.99816 * 0.03218 * 3 2 1 33 33 H 1.08998 * 109.47188 * 154.72753 * 6 5 4 34 34 H 1.08998 * 109.47738 * 34.72329 * 6 5 4 35 35 H 1.09002 * 110.36692 * 264.85851 * 8 7 6 36 36 H 1.08991 * 110.37107 * 27.18333 * 8 7 6 37 37 H 1.09003 * 110.96996 * 81.45309 * 9 8 7 38 38 H 1.09003 * 110.97320 * 205.19066 * 9 8 7 39 39 H 1.09000 * 110.74645 * 276.70861 * 10 9 8 40 40 H 1.08997 * 110.74914 * 153.36057 * 10 9 8 41 41 H 1.09001 * 110.99934 * 214.60199 * 12 11 7 42 42 H 1.09002 * 111.00116 * 338.41098 * 12 11 7 43 43 H 1.09001 * 110.24026 * 143.77986 * 13 12 11 44 44 H 1.09004 * 110.23866 * 265.75916 * 13 12 11 45 45 H 1.08995 * 109.47032 * 30.02741 * 15 14 13 46 46 H 1.09001 * 109.47246 * 150.02432 * 15 14 13 47 47 H 1.08989 * 109.47278 * 299.99897 * 16 15 14 48 48 H 1.08997 * 109.47334 * 60.00400 * 16 15 14 49 49 H 0.97000 * 120.00228 * 179.97438 * 20 19 17 50 50 H 1.07995 * 120.00318 * 180.27717 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1984 0.0046 5 6 4.1810 0.0539 -0.0010 6 6 5.6879 0.0538 -0.0011 7 7 6.1776 0.1747 -1.3808 8 6 5.6598 1.4050 -2.0218 9 6 6.7995 1.8715 -2.9626 10 6 8.0618 1.5137 -2.1316 11 6 7.6430 0.2205 -1.4164 12 6 8.2281 0.1820 0.0064 13 6 8.5510 -1.3216 0.1689 14 7 8.7318 -1.8340 -1.1953 15 6 9.3872 -3.1028 -1.5220 16 6 10.8855 -2.8661 -1.7218 17 6 11.5599 -4.1715 -2.0574 18 1 10.9779 -5.0790 -2.1221 19 6 12.9196 -4.2070 -2.2828 20 7 13.6282 -3.1019 -2.2045 21 14 13.7553 -5.8248 -2.6994 22 1 12.7440 -6.9119 -2.7264 23 1 14.4030 -5.7188 -4.0315 24 1 14.7833 -6.1298 -1.6720 25 6 8.2172 -0.9872 -2.1072 26 8 8.2126 -1.1725 -3.3057 27 6 3.4893 -1.1442 -0.0011 28 7 2.1677 -1.1442 -0.0005 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6590 2.1338 0.0005 33 1 6.0513 -0.8776 0.4331 34 1 6.0514 0.8956 0.5883 35 1 4.7602 1.1837 -2.5962 36 1 5.4530 2.1663 -1.2698 37 1 6.7810 1.3186 -3.9018 38 1 6.7417 2.9450 -3.1430 39 1 8.2844 2.2994 -1.4097 40 1 8.9160 1.3345 -2.7846 41 1 9.1334 0.7854 0.0729 42 1 7.4906 0.5054 0.7410 43 1 9.4676 -1.4503 0.7446 44 1 7.7227 -1.8344 0.6578 45 1 9.2366 -3.8101 -0.7066 46 1 8.9580 -3.5081 -2.4384 47 1 11.0361 -2.1589 -2.5373 48 1 11.3147 -2.4610 -0.8055 49 1 14.5849 -3.1269 -2.3627 50 1 4.0292 -2.0795 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272815160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:37 Heat of formation + Delta-G solvation = 9.240288 kcal Electronic energy + Delta-G solvation = -30729.001197 eV Core-core repulsion = 26755.585247 eV Total energy + Delta-G solvation = -3973.415950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.56589 -41.87937 -39.16069 -37.42070 -35.85167 -35.51397 -34.37250 -33.54986 -32.75876 -30.83849 -29.46851 -28.82744 -27.11885 -26.04101 -25.62492 -24.60616 -23.62471 -23.11444 -22.29948 -21.22398 -19.85525 -18.73994 -18.68940 -18.13428 -17.48513 -17.11897 -16.75989 -16.63245 -16.33429 -16.06801 -15.96166 -15.66084 -14.98803 -14.90988 -14.80609 -14.43721 -14.33136 -14.16176 -13.91082 -13.77237 -13.56135 -13.38616 -13.37772 -13.25181 -12.98315 -12.89165 -12.61958 -12.55089 -12.54332 -12.29930 -12.05430 -12.00307 -11.94776 -11.91416 -11.80627 -11.70257 -11.38963 -10.83856 -10.60982 -10.05245 -10.01991 -9.53610 -9.33956 -8.24314 -6.36749 -0.22250 0.15552 1.38129 1.39875 1.52756 1.56575 2.10372 2.40776 2.59788 2.98613 3.08425 3.09171 3.23860 3.26048 3.38372 3.51600 3.67063 3.75144 3.85085 3.94162 4.08638 4.17030 4.19548 4.23467 4.34175 4.45553 4.50030 4.51822 4.59015 4.63178 4.66020 4.74914 4.78171 4.78812 4.87030 4.87953 4.90411 4.94993 5.00792 5.08314 5.13982 5.24117 5.33005 5.45874 5.48014 5.60136 5.75839 5.81890 5.93351 6.15948 6.33077 6.34013 6.78675 6.82849 7.28280 7.33181 8.87938 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002438 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.956412 B =11483.673349 C =12258.865708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.069 3.931 3 C 0.052 3.948 4 N -0.439 5.439 5 C 0.069 3.931 6 C 0.099 3.901 7 N -0.517 5.517 8 C 0.060 3.940 9 C -0.126 4.126 10 C -0.120 4.120 11 C 0.081 3.919 12 C -0.152 4.152 13 C 0.096 3.904 14 N -0.617 5.617 15 C 0.144 3.856 16 C 0.025 3.975 17 C -0.543 4.543 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.970 3.030 22 H -0.260 1.260 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.522 3.478 26 O -0.581 6.581 27 C 0.063 3.937 28 N -0.467 5.467 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.201 0.799 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.140 0.860 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.048 0.952 47 H -0.028 1.028 48 H 0.003 0.997 49 H 0.264 0.736 50 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.270 13.743 11.427 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.072 4.072 3 C -0.109 4.109 4 N -0.154 5.154 5 C -0.071 4.071 6 C -0.028 4.028 7 N -0.243 5.243 8 C -0.067 4.067 9 C -0.164 4.164 10 C -0.158 4.158 11 C -0.012 4.012 12 C -0.190 4.190 13 C -0.026 4.026 14 N -0.349 5.349 15 C 0.022 3.978 16 C -0.013 4.013 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.794 3.206 22 H -0.183 1.183 23 H -0.208 1.208 24 H -0.198 1.198 25 C 0.309 3.691 26 O -0.460 6.460 27 C -0.097 4.097 28 N -0.183 5.183 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.218 0.782 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.158 0.842 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.066 0.934 47 H -0.010 1.010 48 H 0.022 0.978 49 H 0.073 0.927 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -25.231 13.159 10.540 30.346 hybrid contribution 1.383 -0.466 -0.462 1.531 sum -23.848 12.693 10.078 28.834 Atomic orbital electron populations 1.20796 0.85503 1.04830 1.04488 1.22939 1.00084 0.89464 0.94762 1.24127 0.90143 1.00334 0.96334 1.68262 1.09600 1.29178 1.08404 1.22027 0.97604 0.89845 0.97592 1.21450 0.87196 1.04382 0.89780 1.63213 1.04190 1.39500 1.17348 1.23012 0.96906 0.89902 0.96899 1.22732 0.93455 1.02246 0.97919 1.22660 0.98548 0.95145 0.99475 1.21675 0.89059 0.93623 0.96882 1.23457 1.04050 0.96038 0.95451 1.22411 1.03222 0.94495 0.82485 1.48642 1.56632 1.20939 1.08696 1.21332 0.92551 0.83638 1.00281 1.19207 0.91646 0.95757 0.94716 1.21573 0.93579 0.94972 1.48014 0.91651 1.26015 0.98385 1.00486 0.94960 1.70117 1.07334 1.29247 1.50476 0.85329 0.78464 0.79042 0.77784 1.18341 1.20819 1.19764 1.21108 0.76796 0.85350 0.85847 1.90615 1.60429 1.78307 1.16644 1.23750 0.90495 0.99979 0.95454 1.68359 1.09103 1.30749 1.10114 0.88677 0.87698 0.90963 0.78242 0.87290 0.89385 0.92112 0.90108 0.93230 0.87915 0.87022 0.92952 0.88409 0.84223 0.89866 0.88445 0.89006 0.93367 1.01003 0.97816 0.92702 0.80960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.19 71.24 0.73 -0.05 16 2 C 0.07 1.04 6.79 42.55 0.29 1.33 16 3 C 0.05 0.70 10.88 84.69 0.92 1.62 16 4 N -0.44 -7.64 9.20 -183.30 -1.69 -9.33 16 5 C 0.07 1.28 5.67 42.53 0.24 1.52 16 6 C 0.10 1.69 3.82 85.55 0.33 2.02 16 7 N -0.52 -12.28 4.94 -846.33 -4.18 -16.46 16 8 C 0.06 1.28 5.50 86.75 0.48 1.76 16 9 C -0.13 -2.92 7.08 32.06 0.23 -2.69 16 10 C -0.12 -2.99 5.86 31.59 0.19 -2.81 16 11 C 0.08 2.16 0.99 3.27 0.00 2.17 16 12 C -0.15 -2.95 5.52 31.45 0.17 -2.77 16 13 C 0.10 2.33 7.02 86.87 0.61 2.94 16 14 N -0.62 -22.83 2.94 -818.14 -2.41 -25.24 16 15 C 0.14 6.33 5.88 86.38 0.51 6.83 16 16 C 0.02 1.36 5.30 29.85 0.16 1.52 16 17 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 19 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 20 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 21 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 C 0.52 20.62 6.97 87.62 0.61 21.23 16 26 O -0.58 -29.16 17.43 -3.02 -0.05 -29.21 16 27 C 0.06 1.25 10.86 84.67 0.92 2.17 16 28 N -0.47 -9.65 10.42 -183.29 -1.91 -11.56 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.29 8.09 -2.39 -0.02 0.27 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.20 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.11 1.62 5.88 -2.39 -0.01 1.61 16 34 H 0.09 1.16 6.28 -2.39 -0.01 1.15 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.46 7.13 -2.39 -0.02 1.44 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 2.00 7.81 -2.39 -0.02 1.98 16 40 H 0.05 1.65 7.79 -2.39 -0.02 1.63 16 41 H 0.10 1.82 7.83 -2.39 -0.02 1.80 16 42 H 0.14 1.66 4.65 -2.39 -0.01 1.65 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.10 1.77 6.82 -2.38 -0.02 1.76 16 45 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.05 2.31 7.93 -2.39 -0.02 2.30 16 47 H -0.03 -1.82 8.14 -2.39 -0.02 -1.84 16 48 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 50 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -83.39 397.61 0.09 -83.30 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.94 Total: 13.19 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 7.07 Total: 5.83 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -9.89 Total: -120.21 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.21 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -83.39 0.09 -83.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.545 kcal (2) G-P(sol) polarization free energy of solvation -83.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds