Wall clock time and date at job start Wed Apr 1 2020 04:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38382 * 120.00211 * 2 1 4 4 N 1.32124 * 120.00287 * 180.02562 * 3 2 1 5 5 C 1.32153 * 119.99716 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00177 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.46950 * 274.97943 * 6 5 4 8 8 C 1.48065 * 110.99867 * 290.41722 * 7 6 5 9 9 C 1.54973 * 104.81974 * 213.97124 * 8 7 6 10 10 C 1.55312 * 101.73729 * 36.67074 * 9 8 7 11 11 C 1.46657 * 110.99560 * 169.99872 * 7 6 5 12 12 C 1.53882 * 110.90565 * 2.15375 * 11 7 6 13 13 C 1.54638 * 101.59677 * 263.46151 * 12 11 7 14 14 N 1.46857 * 105.50374 * 335.23561 * 13 12 11 15 15 C 1.46499 * 124.36694 * 196.90294 * 14 13 12 16 16 C 1.53002 * 109.46788 * 269.99437 * 15 14 13 17 17 C 1.50699 * 109.47158 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99866 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00234 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99984 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47319 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46742 * 120.00073 * 21 19 17 24 24 H 1.48498 * 109.46961 * 239.99593 * 21 19 17 25 25 C 1.34651 * 111.26117 * 16.87480 * 14 13 12 26 26 O 1.21280 * 125.07498 * 179.17288 * 25 14 13 27 27 C 1.38341 * 120.00474 * 359.97438 * 5 4 3 28 28 N 1.32127 * 120.00458 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47238 * 269.97685 * 1 2 3 30 30 H 1.08998 * 109.47263 * 29.97825 * 1 2 3 31 31 H 1.09003 * 109.47066 * 149.97485 * 1 2 3 32 32 H 1.08000 * 120.00073 * 0.04737 * 3 2 1 33 33 H 1.09003 * 109.46573 * 34.97598 * 6 5 4 34 34 H 1.08998 * 109.47278 * 154.97744 * 6 5 4 35 35 H 1.09001 * 110.37836 * 332.81037 * 8 7 6 36 36 H 1.09006 * 110.37147 * 95.14145 * 8 7 6 37 37 H 1.08999 * 110.98192 * 278.55624 * 9 8 7 38 38 H 1.09008 * 111.00980 * 154.79258 * 9 8 7 39 39 H 1.09000 * 110.74545 * 206.63323 * 10 9 8 40 40 H 1.08999 * 110.75167 * 83.28966 * 10 9 8 41 41 H 1.09006 * 111.00287 * 21.54000 * 12 11 7 42 42 H 1.08994 * 111.00327 * 145.38087 * 12 11 7 43 43 H 1.08995 * 110.24473 * 216.22599 * 13 12 11 44 44 H 1.09000 * 110.31584 * 94.27528 * 13 12 11 45 45 H 1.08996 * 109.47090 * 29.99199 * 15 14 13 46 46 H 1.08995 * 109.46978 * 150.00057 * 15 14 13 47 47 H 1.09005 * 109.47074 * 300.00345 * 16 15 14 48 48 H 1.08999 * 109.47231 * 60.00235 * 16 15 14 49 49 H 0.96997 * 120.00133 * 179.97438 * 20 19 17 50 50 H 1.08000 * 120.00591 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1984 0.0000 4 7 3.5202 1.1984 -0.0005 5 6 4.1809 0.0539 -0.0015 6 6 5.6879 0.0538 -0.0015 7 7 6.1776 0.1752 -1.3813 8 6 5.8997 -1.0573 -2.1533 9 6 7.0981 -1.1941 -3.1263 10 6 8.2764 -0.6898 -2.2492 11 6 7.6240 0.4160 -1.4062 12 6 8.2053 0.4163 0.0186 13 6 8.2350 1.9282 0.3419 14 7 8.2999 2.6066 -0.9589 15 6 8.6966 4.0048 -1.1435 16 6 7.4590 4.9008 -1.0630 17 6 7.8669 6.3390 -1.2536 18 1 8.9049 6.5889 -1.4163 19 6 6.9149 7.3358 -1.2202 20 7 5.6508 7.0315 -1.0226 21 14 7.4207 9.1185 -1.4557 22 1 8.8897 9.1935 -1.6597 23 1 6.7272 9.6769 -2.6442 24 1 7.0470 9.9023 -0.2510 25 6 7.9484 1.7776 -1.9600 26 8 7.9006 2.0823 -3.1329 27 6 3.4892 -1.1442 -0.0015 28 7 2.1677 -1.1442 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6590 2.1337 0.0008 33 1 6.0512 0.8954 0.5883 34 1 6.0512 -0.8778 0.4323 35 1 5.8510 -1.9192 -1.4878 36 1 4.9685 -0.9541 -2.7105 37 1 6.9641 -0.5594 -4.0022 38 1 7.2468 -2.2335 -3.4194 39 1 9.0735 -0.2820 -2.8709 40 1 8.6534 -1.4897 -1.6119 41 1 7.5509 -0.1178 0.7076 42 1 9.2102 -0.0056 0.0306 43 1 9.1156 2.1693 0.9373 44 1 7.3294 2.2192 0.8741 45 1 9.4020 4.2884 -0.3626 46 1 9.1678 4.1229 -2.1193 47 1 6.7535 4.6170 -1.8440 48 1 6.9878 4.7827 -0.0873 49 1 4.9812 7.7328 -0.9987 50 1 4.0292 -2.0795 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272815161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:42 Heat of formation + Delta-G solvation = 35.971585 kcal Electronic energy + Delta-G solvation = -31157.629498 eV Core-core repulsion = 27185.372703 eV Total energy + Delta-G solvation = -3972.256794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.52792 -40.85193 -37.87402 -35.90324 -34.91240 -33.58592 -33.45791 -32.06191 -31.71675 -29.11910 -28.62695 -27.71632 -25.58372 -24.78387 -24.73986 -23.44576 -22.34728 -21.92543 -21.03240 -19.93166 -18.57337 -17.81799 -17.14654 -16.56749 -16.27347 -16.13241 -15.64826 -15.27070 -15.15754 -14.94700 -14.53560 -14.29168 -13.92116 -13.75428 -13.46969 -13.18331 -13.07258 -12.88039 -12.72963 -12.63143 -12.58130 -12.34488 -12.24103 -11.94380 -11.76763 -11.52437 -11.39389 -11.23860 -11.12861 -11.06733 -10.96631 -10.91938 -10.80360 -10.59924 -9.92261 -9.78041 -9.48784 -9.18955 -9.10812 -9.04640 -8.31382 -8.28452 -7.91785 -5.94144 -3.97882 0.63419 1.09433 2.89795 3.34687 3.41631 3.45546 3.52734 3.62073 3.84667 4.03827 4.09179 4.21751 4.33592 4.42003 4.51076 4.57425 4.65165 4.77163 4.85093 4.91996 4.98629 5.05447 5.15686 5.19082 5.27195 5.31489 5.33048 5.41333 5.48153 5.48591 5.54051 5.63951 5.68423 5.71615 5.75674 5.79522 5.92419 5.99358 6.11136 6.19820 6.27170 6.52244 6.76781 6.80919 6.90567 7.11231 7.24282 7.61798 7.76755 7.77075 7.95907 8.07753 8.42067 8.80293 9.09546 9.65531 11.16901 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.003715 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.668017 B = 7534.953453 C = 9906.693390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.070 3.930 3 C 0.060 3.940 4 N -0.405 5.405 5 C 0.084 3.916 6 C 0.097 3.903 7 N -0.493 5.493 8 C 0.043 3.957 9 C -0.127 4.127 10 C -0.118 4.118 11 C 0.072 3.928 12 C -0.163 4.163 13 C 0.104 3.896 14 N -0.609 5.609 15 C 0.130 3.870 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.540 3.460 26 O -0.522 6.522 27 C 0.056 3.944 28 N -0.441 5.441 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.170 0.830 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.017 0.983 49 H 0.259 0.741 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -22.324 5.538 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.071 4.071 3 C -0.100 4.100 4 N -0.119 5.119 5 C -0.057 4.057 6 C -0.031 4.031 7 N -0.218 5.218 8 C -0.084 4.084 9 C -0.165 4.165 10 C -0.157 4.157 11 C -0.021 4.021 12 C -0.201 4.201 13 C -0.020 4.020 14 N -0.342 5.342 15 C 0.010 3.990 16 C -0.024 4.024 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.324 3.676 26 O -0.397 6.397 27 C -0.105 4.105 28 N -0.157 5.157 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.187 0.813 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.035 0.965 49 H 0.069 0.931 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.076 -21.540 4.697 22.260 hybrid contribution 0.450 0.529 0.376 0.789 sum -2.626 -21.011 5.072 21.774 Atomic orbital electron populations 1.20665 0.87771 1.03923 1.03344 1.22334 0.98448 0.89811 0.96497 1.23754 0.90654 0.99282 0.96354 1.68387 1.08404 1.29039 1.06088 1.22053 0.97423 0.89610 0.96616 1.21352 0.88189 1.02426 0.91179 1.63112 1.11600 1.35593 1.11488 1.23204 0.99627 0.89869 0.95739 1.22734 0.93506 1.01388 0.98832 1.22613 0.98675 0.96376 0.97998 1.21915 0.88360 0.95991 0.95836 1.23351 1.02870 0.97465 0.96403 1.22038 1.02508 0.90605 0.86826 1.48499 1.66732 1.12466 1.06501 1.21793 0.99547 0.76728 1.00927 1.19384 0.92233 0.93063 0.97763 1.21131 0.93896 0.91382 1.49658 0.92553 1.24996 0.94908 0.99076 0.95241 1.70006 1.00504 1.32699 1.49594 0.86537 0.78700 0.85073 0.77686 1.19708 1.20996 1.21047 1.19977 0.76202 0.85850 0.85555 1.90664 1.52749 1.79547 1.16702 1.23502 0.90700 0.98905 0.97369 1.68261 1.08531 1.29423 1.09436 0.90102 0.90083 0.90343 0.81269 0.87558 0.92055 0.93219 0.90274 0.89775 0.90581 0.89940 0.90550 0.88328 0.89351 0.90513 0.90998 0.91799 0.91244 0.95937 0.96471 0.93089 0.81991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.19 36.00 0.37 -0.39 16 2 C 0.07 0.79 6.79 -82.41 -0.56 0.23 16 3 C 0.06 0.78 10.88 -17.37 -0.19 0.59 16 4 N -0.41 -6.37 10.42 -9.29 -0.10 -6.46 16 5 C 0.08 1.10 5.92 -82.41 -0.49 0.61 16 6 C 0.10 1.14 3.75 -4.97 -0.02 1.12 16 7 N -0.49 -6.86 4.84 -218.84 -1.06 -7.92 16 8 C 0.04 0.48 5.83 -2.14 -0.01 0.46 16 9 C -0.13 -1.38 7.08 -24.46 -0.17 -1.56 16 10 C -0.12 -1.32 5.85 -25.20 -0.15 -1.47 16 11 C 0.07 0.99 0.99 -132.20 -0.13 0.86 16 12 C -0.16 -1.70 5.51 -25.41 -0.14 -1.84 16 13 C 0.10 1.44 6.98 -2.99 -0.02 1.42 16 14 N -0.61 -11.51 2.94 -172.50 -0.51 -12.01 16 15 C 0.13 2.86 5.88 -4.04 -0.02 2.83 16 16 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 17 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 21 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.54 10.51 6.97 -11.13 -0.08 10.43 16 26 O -0.52 -12.40 17.43 5.56 0.10 -12.31 16 27 C 0.06 0.62 10.38 -17.37 -0.18 0.44 16 28 N -0.44 -5.32 10.42 -9.29 -0.10 -5.42 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.11 1.38 5.06 -51.93 -0.26 1.12 16 34 H 0.06 0.50 6.71 -51.93 -0.35 0.15 16 35 H 0.05 0.41 7.44 -51.93 -0.39 0.03 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 40 H 0.08 0.63 7.81 -51.93 -0.41 0.22 16 41 H 0.10 0.80 4.85 -51.93 -0.25 0.55 16 42 H 0.09 0.75 7.83 -51.93 -0.41 0.34 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.05 6.76 -51.93 -0.35 0.70 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.07 1.60 7.94 -51.93 -0.41 1.19 16 47 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 50 H 0.16 1.28 7.89 -52.49 -0.41 0.87 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -37.95 398.64 -10.13 -48.08 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.83 Total: -0.26 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.35 Total: 0.09 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -1.02 Total: -58.76 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.10 Total: -12.31 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.95 -10.13 -48.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.050 kcal (2) G-P(sol) polarization free energy of solvation -37.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds