Wall clock time and date at job start Wed Apr 1 2020 04:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38382 * 120.00211 * 2 1 4 4 N 1.32124 * 120.00287 * 180.02562 * 3 2 1 5 5 C 1.32153 * 119.99716 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00177 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.46950 * 274.97943 * 6 5 4 8 8 C 1.48065 * 110.99867 * 290.41722 * 7 6 5 9 9 C 1.54973 * 104.81974 * 213.97124 * 8 7 6 10 10 C 1.55312 * 101.73729 * 36.67074 * 9 8 7 11 11 C 1.46657 * 110.99560 * 169.99872 * 7 6 5 12 12 C 1.53882 * 110.90565 * 2.15375 * 11 7 6 13 13 C 1.54638 * 101.59677 * 263.46151 * 12 11 7 14 14 N 1.46857 * 105.50374 * 335.23561 * 13 12 11 15 15 C 1.46499 * 124.36694 * 196.90294 * 14 13 12 16 16 C 1.53002 * 109.46788 * 269.99437 * 15 14 13 17 17 C 1.50699 * 109.47158 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99866 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00234 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99984 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47319 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46742 * 120.00073 * 21 19 17 24 24 H 1.48498 * 109.46961 * 239.99593 * 21 19 17 25 25 C 1.34651 * 111.26117 * 16.87480 * 14 13 12 26 26 O 1.21280 * 125.07498 * 179.17288 * 25 14 13 27 27 C 1.38341 * 120.00474 * 359.97438 * 5 4 3 28 28 N 1.32127 * 120.00458 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47238 * 269.97685 * 1 2 3 30 30 H 1.08998 * 109.47263 * 29.97825 * 1 2 3 31 31 H 1.09003 * 109.47066 * 149.97485 * 1 2 3 32 32 H 1.08000 * 120.00073 * 0.04737 * 3 2 1 33 33 H 1.09003 * 109.46573 * 34.97598 * 6 5 4 34 34 H 1.08998 * 109.47278 * 154.97744 * 6 5 4 35 35 H 1.09001 * 110.37836 * 332.81037 * 8 7 6 36 36 H 1.09006 * 110.37147 * 95.14145 * 8 7 6 37 37 H 1.08999 * 110.98192 * 278.55624 * 9 8 7 38 38 H 1.09008 * 111.00980 * 154.79258 * 9 8 7 39 39 H 1.09000 * 110.74545 * 206.63323 * 10 9 8 40 40 H 1.08999 * 110.75167 * 83.28966 * 10 9 8 41 41 H 1.09006 * 111.00287 * 21.54000 * 12 11 7 42 42 H 1.08994 * 111.00327 * 145.38087 * 12 11 7 43 43 H 1.08995 * 110.24473 * 216.22599 * 13 12 11 44 44 H 1.09000 * 110.31584 * 94.27528 * 13 12 11 45 45 H 1.08996 * 109.47090 * 29.99199 * 15 14 13 46 46 H 1.08995 * 109.46978 * 150.00057 * 15 14 13 47 47 H 1.09005 * 109.47074 * 300.00345 * 16 15 14 48 48 H 1.08999 * 109.47231 * 60.00235 * 16 15 14 49 49 H 0.96997 * 120.00133 * 179.97438 * 20 19 17 50 50 H 1.08000 * 120.00591 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1984 0.0000 4 7 3.5202 1.1984 -0.0005 5 6 4.1809 0.0539 -0.0015 6 6 5.6879 0.0538 -0.0015 7 7 6.1776 0.1752 -1.3813 8 6 5.8997 -1.0573 -2.1533 9 6 7.0981 -1.1941 -3.1263 10 6 8.2764 -0.6898 -2.2492 11 6 7.6240 0.4160 -1.4062 12 6 8.2053 0.4163 0.0186 13 6 8.2350 1.9282 0.3419 14 7 8.2999 2.6066 -0.9589 15 6 8.6966 4.0048 -1.1435 16 6 7.4590 4.9008 -1.0630 17 6 7.8669 6.3390 -1.2536 18 1 8.9049 6.5889 -1.4163 19 6 6.9149 7.3358 -1.2202 20 7 5.6508 7.0315 -1.0226 21 14 7.4207 9.1185 -1.4557 22 1 8.8897 9.1935 -1.6597 23 1 6.7272 9.6769 -2.6442 24 1 7.0470 9.9023 -0.2510 25 6 7.9484 1.7776 -1.9600 26 8 7.9006 2.0823 -3.1329 27 6 3.4892 -1.1442 -0.0015 28 7 2.1677 -1.1442 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6590 2.1337 0.0008 33 1 6.0512 0.8954 0.5883 34 1 6.0512 -0.8778 0.4323 35 1 5.8510 -1.9192 -1.4878 36 1 4.9685 -0.9541 -2.7105 37 1 6.9641 -0.5594 -4.0022 38 1 7.2468 -2.2335 -3.4194 39 1 9.0735 -0.2820 -2.8709 40 1 8.6534 -1.4897 -1.6119 41 1 7.5509 -0.1178 0.7076 42 1 9.2102 -0.0056 0.0306 43 1 9.1156 2.1693 0.9373 44 1 7.3294 2.2192 0.8741 45 1 9.4020 4.2884 -0.3626 46 1 9.1678 4.1229 -2.1193 47 1 6.7535 4.6170 -1.8440 48 1 6.9878 4.7827 -0.0873 49 1 4.9812 7.7328 -0.9987 50 1 4.0292 -2.0795 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272815161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:41 Heat of formation + Delta-G solvation = 6.963108 kcal Electronic energy + Delta-G solvation = -31158.887399 eV Core-core repulsion = 27185.372703 eV Total energy + Delta-G solvation = -3973.514696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.54509 -41.89664 -39.15225 -37.42161 -35.83989 -35.56106 -34.39811 -33.57523 -32.75921 -30.82870 -29.47482 -28.81166 -27.13408 -26.03392 -25.71193 -24.55337 -23.69262 -23.15472 -22.18849 -21.22552 -19.88558 -18.75150 -18.71883 -18.12210 -17.45047 -17.12511 -16.84313 -16.65282 -16.33706 -16.20550 -15.93265 -15.63514 -15.01879 -14.85741 -14.80241 -14.50190 -14.25013 -14.18892 -13.81804 -13.77134 -13.62541 -13.47788 -13.34567 -13.16014 -12.91898 -12.85343 -12.70954 -12.60791 -12.43723 -12.28719 -12.10621 -12.05504 -12.01920 -11.86525 -11.72955 -11.70558 -11.39024 -10.82695 -10.62901 -10.05302 -10.00194 -9.55236 -9.27830 -8.24237 -6.38851 -0.25368 0.15384 1.36090 1.38634 1.51267 1.54469 2.16836 2.39772 2.58463 3.02126 3.08261 3.10722 3.21330 3.28656 3.37780 3.50710 3.71796 3.77196 3.85787 3.98324 4.04514 4.16199 4.23205 4.23906 4.31500 4.37109 4.45400 4.50557 4.58562 4.60323 4.68118 4.74322 4.74524 4.81304 4.83464 4.85690 4.89571 4.98506 5.03117 5.08427 5.12165 5.29384 5.33596 5.43298 5.44476 5.58913 5.80517 5.86601 5.99537 6.14018 6.34480 6.35781 6.77460 6.85730 7.28520 7.32001 8.88145 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.003715 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.668017 B = 7534.953453 C = 9906.693390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.073 3.927 3 C 0.036 3.964 4 N -0.460 5.460 5 C 0.067 3.933 6 C 0.099 3.901 7 N -0.535 5.535 8 C 0.048 3.952 9 C -0.125 4.125 10 C -0.111 4.111 11 C 0.079 3.921 12 C -0.142 4.142 13 C 0.093 3.907 14 N -0.618 5.618 15 C 0.143 3.857 16 C 0.030 3.970 17 C -0.546 4.546 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.973 3.027 22 H -0.256 1.256 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.517 3.483 26 O -0.584 6.584 27 C 0.068 3.932 28 N -0.454 5.454 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.174 0.826 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.112 0.888 39 H 0.061 0.939 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.051 0.949 47 H -0.037 1.037 48 H -0.006 1.006 49 H 0.264 0.736 50 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 -25.089 7.558 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.067 4.067 3 C -0.124 4.124 4 N -0.175 5.175 5 C -0.074 4.074 6 C -0.029 4.029 7 N -0.261 5.261 8 C -0.078 4.078 9 C -0.163 4.163 10 C -0.149 4.149 11 C -0.014 4.014 12 C -0.179 4.179 13 C -0.029 4.029 14 N -0.350 5.350 15 C 0.022 3.978 16 C -0.008 4.008 17 C -0.584 4.584 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.797 3.203 22 H -0.180 1.180 23 H -0.208 1.208 24 H -0.197 1.197 25 C 0.305 3.695 26 O -0.464 6.464 27 C -0.092 4.092 28 N -0.170 5.170 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.191 0.809 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.069 0.931 47 H -0.018 1.018 48 H 0.012 0.988 49 H 0.072 0.928 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.778 -24.338 6.761 25.322 hybrid contribution -0.055 1.428 -0.287 1.458 sum -1.833 -22.909 6.473 23.877 Atomic orbital electron populations 1.20766 0.85273 1.04774 1.04568 1.22773 1.00025 0.89047 0.94897 1.23958 0.90312 1.00506 0.97637 1.68292 1.09982 1.31463 1.07761 1.22389 0.98214 0.89613 0.97148 1.21450 0.87355 1.04081 0.89975 1.62796 1.11894 1.38035 1.13384 1.23208 0.98459 0.90197 0.95982 1.22723 0.93691 1.02552 0.97369 1.22672 0.97784 0.96448 0.98026 1.21777 0.89017 0.92660 0.97952 1.23429 1.05323 0.94832 0.94340 1.22392 1.03104 0.92959 0.84438 1.48648 1.66138 1.11245 1.08983 1.21339 0.97112 0.78397 1.01002 1.19137 0.93218 0.94337 0.94122 1.21586 0.94672 0.92308 1.49848 0.91352 1.26087 0.94687 1.04738 0.94405 1.70169 1.02012 1.34670 1.50399 0.85283 0.79062 0.78097 0.77883 1.18008 1.20754 1.19688 1.21346 0.74730 0.88592 0.84864 1.90604 1.54987 1.81365 1.19411 1.24041 0.90496 0.99558 0.95130 1.68386 1.09146 1.29377 1.10062 0.88516 0.88930 0.89751 0.80860 0.89466 0.86915 0.88728 0.92523 0.94073 0.86922 0.92019 0.85612 0.85008 0.85899 0.87756 0.92484 0.88894 0.93074 1.01827 0.98756 0.92760 0.78034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.19 71.23 0.73 -0.65 16 2 C 0.07 1.63 6.79 42.55 0.29 1.92 16 3 C 0.04 0.98 10.88 84.68 0.92 1.90 16 4 N -0.46 -15.21 10.42 -183.30 -1.91 -17.12 16 5 C 0.07 1.71 5.92 42.54 0.25 1.96 16 6 C 0.10 2.12 3.75 85.56 0.32 2.44 16 7 N -0.54 -14.43 4.84 -846.29 -4.10 -18.53 16 8 C 0.05 0.96 5.83 86.75 0.51 1.47 16 9 C -0.13 -2.54 7.08 32.06 0.23 -2.31 16 10 C -0.11 -2.19 5.85 31.59 0.18 -2.00 16 11 C 0.08 2.07 0.99 3.27 0.00 2.07 16 12 C -0.14 -2.43 5.51 31.45 0.17 -2.26 16 13 C 0.09 2.47 6.98 86.87 0.61 3.07 16 14 N -0.62 -24.22 2.94 -818.13 -2.41 -26.63 16 15 C 0.14 6.63 5.88 86.38 0.51 7.13 16 16 C 0.03 1.76 5.30 29.85 0.16 1.92 16 17 C -0.55 -33.10 9.11 25.60 0.23 -32.86 16 18 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 19 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 20 N -0.93 -60.70 13.29 21.45 0.28 -60.41 16 21 Si 0.97 46.31 29.54 68.60 2.03 48.33 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 25 C 0.52 21.13 6.97 87.62 0.61 21.75 16 26 O -0.58 -30.22 17.43 -3.03 -0.05 -30.27 16 27 C 0.07 1.35 10.38 84.67 0.88 2.23 16 28 N -0.45 -10.25 10.42 -183.30 -1.91 -12.16 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.10 8.09 -2.39 -0.02 1.08 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.17 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.09 2.19 5.06 -2.39 -0.01 2.18 16 34 H 0.11 1.18 6.71 -2.39 -0.02 1.17 16 35 H 0.09 1.05 7.44 -2.39 -0.02 1.03 16 36 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.06 1.49 7.79 -2.39 -0.02 1.48 16 40 H 0.13 1.29 7.81 -2.39 -0.02 1.27 16 41 H 0.13 1.43 4.85 -2.38 -0.01 1.42 16 42 H 0.12 1.35 7.83 -2.39 -0.02 1.33 16 43 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 1.69 6.76 -2.39 -0.02 1.67 16 45 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 46 H 0.05 2.52 7.94 -2.39 -0.02 2.50 16 47 H -0.04 -2.56 8.14 -2.38 -0.02 -2.58 16 48 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 49 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 50 H 0.20 2.17 7.89 -2.91 -0.02 2.15 16 Total: -1.00 -93.97 398.64 -0.07 -94.04 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.94 Total: 14.58 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 7.06 Total: 8.16 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -10.04 Total: -134.84 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.05 Total: -30.27 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -93.97 -0.07 -94.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.001 kcal (2) G-P(sol) polarization free energy of solvation -93.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds