Wall clock time and date at job start Wed Apr 1 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38396 * 119.99683 * 2 1 4 4 N 1.32124 * 119.99192 * 179.97438 * 3 2 1 5 5 C 1.32146 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00247 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47038 * 274.99902 * 6 5 4 8 8 C 1.48646 * 111.00084 * 290.12577 * 7 6 5 9 9 C 1.54642 * 104.63364 * 201.49077 * 8 7 6 10 10 C 1.53250 * 104.67647 * 23.68066 * 9 8 7 11 11 C 1.53615 * 111.05504 * 239.01799 * 10 9 8 12 12 C 1.54706 * 101.50972 * 262.68393 * 11 10 9 13 13 N 1.46881 * 105.51455 * 335.46933 * 12 11 10 14 14 C 1.46507 * 124.37154 * 196.78826 * 13 12 11 15 15 C 1.53004 * 109.46773 * 90.00435 * 14 13 12 16 16 C 1.50695 * 109.46637 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00546 * 0.27598 * 16 15 14 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47093 * 60.00328 * 20 18 16 22 22 H 1.48495 * 109.47002 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47239 * 300.00048 * 20 18 16 24 24 C 1.34756 * 111.25708 * 17.06105 * 13 12 11 25 25 O 1.21278 * 125.13512 * 178.73690 * 24 13 12 26 26 C 1.48798 * 110.99973 * 174.50687 * 7 6 5 27 27 C 1.38344 * 120.00288 * 0.25633 * 5 4 3 28 28 N 1.32119 * 120.00533 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46710 * 90.00296 * 1 2 3 30 30 H 1.08998 * 109.47066 * 210.00257 * 1 2 3 31 31 H 1.08995 * 109.47254 * 330.00376 * 1 2 3 32 32 H 1.08001 * 120.00084 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47629 * 155.00095 * 6 5 4 34 34 H 1.09000 * 109.46755 * 34.99501 * 6 5 4 35 35 H 1.08996 * 110.40741 * 82.70085 * 8 7 6 36 36 H 1.08995 * 110.40266 * 320.27930 * 8 7 6 37 37 H 1.09003 * 110.39286 * 264.88295 * 9 8 7 38 38 H 1.08997 * 110.49462 * 142.53496 * 9 8 7 39 39 H 1.08997 * 111.02055 * 144.62343 * 11 10 9 40 40 H 1.09003 * 111.01806 * 20.73748 * 11 10 9 41 41 H 1.08997 * 110.23438 * 216.46202 * 12 11 10 42 42 H 1.08995 * 110.31108 * 94.51899 * 12 11 10 43 43 H 1.09000 * 109.46860 * 330.00633 * 14 13 12 44 44 H 1.08997 * 109.47067 * 209.99984 * 14 13 12 45 45 H 1.08992 * 109.47421 * 60.00163 * 15 14 13 46 46 H 1.08997 * 109.46955 * 299.99616 * 15 14 13 47 47 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 48 48 H 1.09001 * 110.46013 * 39.48479 * 26 7 6 49 49 H 1.09008 * 110.46009 * 276.91608 * 26 7 6 50 50 H 1.07998 * 120.00187 * 179.72090 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1986 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0540 0.0015 6 6 5.6879 0.0540 0.0015 7 7 6.1776 0.1734 -1.3783 8 6 5.9049 -1.0677 -2.1496 9 6 6.9136 -1.0291 -3.3212 10 6 8.0527 -0.1328 -2.8234 11 6 8.2437 1.0805 -3.7460 12 6 9.4058 0.6023 -4.6483 13 7 10.1221 -0.4110 -3.8624 14 6 11.4771 -0.8824 -4.1594 15 6 12.4940 -0.0089 -3.4219 16 6 13.8877 -0.4935 -3.7280 17 1 14.0339 -1.3370 -4.3865 18 6 14.9768 0.1439 -3.1722 19 7 14.7991 1.1744 -2.3746 20 14 16.7044 -0.4572 -3.5509 21 1 16.9480 -0.3740 -5.0134 22 1 17.6914 0.3906 -2.8352 23 1 16.8472 -1.8663 -3.1046 24 6 9.3698 -0.8552 -2.8365 25 8 9.7062 -1.7079 -2.0423 26 6 7.6590 0.3094 -1.4085 27 6 3.4893 -1.1441 -0.0033 28 7 2.1677 -1.1441 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6589 2.1339 -0.0004 33 1 6.0513 -0.8770 0.4366 34 1 6.0513 0.8964 0.5902 35 1 4.8828 -1.0631 -2.5280 36 1 6.0773 -1.9466 -1.5286 37 1 6.4497 -0.5967 -4.2077 38 1 7.2852 -2.0306 -3.5379 39 1 8.5297 1.9642 -3.1756 40 1 7.3453 1.2702 -4.3334 41 1 10.0684 1.4354 -4.8828 42 1 9.0158 0.1616 -5.5658 43 1 11.6560 -0.8209 -5.2329 44 1 11.5817 -1.9168 -3.8323 45 1 12.3151 -0.0704 -2.3486 46 1 12.3894 1.0255 -3.7491 47 1 15.5652 1.6226 -1.9833 48 1 8.1168 -0.3425 -0.6645 49 1 7.9500 1.3461 -1.2387 50 1 4.0293 -2.0794 -0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272815689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:19 Heat of formation + Delta-G solvation = 18.282777 kcal Electronic energy + Delta-G solvation = -29781.919258 eV Core-core repulsion = 25808.895419 eV Total energy + Delta-G solvation = -3973.023839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.54399 -40.87216 -38.13731 -36.04017 -35.18039 -34.11366 -33.34070 -32.39876 -30.85347 -29.31148 -28.87530 -27.83179 -25.63509 -25.02856 -24.88247 -23.30819 -22.54292 -21.80698 -21.21058 -20.24798 -18.63534 -18.06739 -16.79373 -16.62011 -16.40847 -16.20344 -15.61076 -15.48307 -15.35601 -15.07329 -14.60851 -14.43535 -14.22653 -13.91981 -13.47416 -13.37961 -13.22882 -12.97202 -12.90116 -12.75468 -12.59496 -12.55073 -12.15154 -12.03497 -11.91583 -11.77212 -11.60837 -11.48207 -11.34181 -11.27088 -10.93618 -10.87806 -10.72701 -10.62673 -9.99950 -9.87961 -9.47292 -9.37041 -9.34796 -9.12274 -8.71411 -8.38099 -8.02963 -6.03277 -4.06966 0.39572 0.82731 2.92535 3.22150 3.32223 3.36535 3.38487 3.51694 3.62077 3.81469 3.89289 4.12528 4.30281 4.34024 4.41191 4.44694 4.54838 4.68931 4.77573 4.88564 4.99381 5.01348 5.09305 5.11736 5.19762 5.22658 5.30812 5.32784 5.41685 5.43784 5.50943 5.51194 5.68082 5.69567 5.76401 5.84450 5.91586 5.94448 6.02221 6.04788 6.11826 6.44922 6.53015 6.68245 6.79436 6.98569 6.98897 7.48461 7.48852 7.65194 7.83472 7.96149 8.32177 8.64041 8.99446 9.57080 11.08023 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028571 B = 0.001907 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.792266 B =14678.739710 C =14858.511798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.071 3.929 3 C 0.054 3.946 4 N -0.416 5.416 5 C 0.088 3.912 6 C 0.094 3.906 7 N -0.498 5.498 8 C 0.031 3.969 9 C -0.097 4.097 10 C -0.099 4.099 11 C -0.114 4.114 12 C 0.099 3.901 13 N -0.609 5.609 14 C 0.127 3.873 15 C 0.013 3.987 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.525 3.475 25 O -0.531 6.531 26 C 0.056 3.944 27 C 0.061 3.939 28 N -0.439 5.439 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.017 0.983 47 H 0.262 0.738 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.779 0.304 1.309 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.070 4.070 3 C -0.107 4.107 4 N -0.130 5.130 5 C -0.053 4.053 6 C -0.035 4.035 7 N -0.222 5.222 8 C -0.097 4.097 9 C -0.136 4.136 10 C -0.104 4.104 11 C -0.151 4.151 12 C -0.025 4.025 13 N -0.341 5.341 14 C 0.007 3.993 15 C -0.025 4.025 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.310 3.690 25 O -0.408 6.408 26 C -0.072 4.072 27 C -0.099 4.099 28 N -0.155 5.155 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.036 0.964 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -28.656 0.429 1.585 28.703 hybrid contribution 1.487 -0.863 0.144 1.725 sum -27.169 -0.434 1.729 27.227 Atomic orbital electron populations 1.20679 0.87741 1.03894 1.03500 1.22354 0.98511 0.89817 0.96317 1.23655 0.90678 0.99154 0.97229 1.68278 1.08340 1.29340 1.07092 1.22029 0.97504 0.89513 0.96259 1.21071 0.87894 1.02951 0.91595 1.65491 1.11923 1.34169 1.10627 1.23248 0.99592 0.91486 0.95346 1.22129 0.93594 0.99677 0.98165 1.21363 0.94832 0.96986 0.97173 1.22653 0.98565 0.96685 0.97239 1.22124 0.93927 0.92139 0.94276 1.48631 1.16306 1.40381 1.28826 1.21815 0.78182 0.99401 0.99884 1.19393 0.92266 0.94744 0.96111 1.21050 0.90812 1.15295 1.29110 0.92537 1.25001 0.99341 0.94909 0.94983 1.69962 1.30801 1.20945 1.31397 0.86608 0.83866 0.78814 0.78417 1.20184 1.21250 1.20154 1.20172 0.85506 0.82406 0.80868 1.90689 1.76030 1.32824 1.41211 1.22972 0.86793 1.02487 0.94928 1.23612 0.90564 0.99296 0.96458 1.68304 1.08618 1.29407 1.09136 0.89975 0.90225 0.90199 0.81460 0.92007 0.88256 0.90371 0.93113 0.90001 0.90724 0.89660 0.89235 0.90041 0.91637 0.91615 0.91165 0.96125 0.96430 0.92863 0.91880 0.88878 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.19 36.01 0.37 -0.10 16 2 C 0.07 0.58 6.79 -82.41 -0.56 0.02 16 3 C 0.05 0.44 10.88 -17.37 -0.19 0.26 16 4 N -0.42 -4.45 10.42 -9.29 -0.10 -4.55 16 5 C 0.09 0.88 5.93 -82.42 -0.49 0.39 16 6 C 0.09 0.93 5.15 -4.97 -0.03 0.90 16 7 N -0.50 -5.46 5.36 -231.60 -1.24 -6.70 16 8 C 0.03 0.32 5.62 -1.99 -0.01 0.31 16 9 C -0.10 -1.07 6.32 -25.74 -0.16 -1.24 16 10 C -0.10 -1.31 0.83 -155.25 -0.13 -1.44 16 11 C -0.11 -1.30 6.24 -25.51 -0.16 -1.46 16 12 C 0.10 1.32 7.36 -2.94 -0.02 1.29 16 13 N -0.61 -10.93 2.94 -172.52 -0.51 -11.44 16 14 C 0.13 2.68 5.89 -4.04 -0.02 2.66 16 15 C 0.01 0.33 5.30 -27.88 -0.15 0.19 16 16 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 20 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.52 9.53 6.64 -11.22 -0.07 9.46 16 25 O -0.53 -11.76 17.09 5.56 0.09 -11.66 16 26 C 0.06 0.71 5.65 -2.57 -0.01 0.69 16 27 C 0.06 0.57 10.34 -17.37 -0.18 0.39 16 28 N -0.44 -4.36 10.42 -9.29 -0.10 -4.46 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 32 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 34 H 0.10 0.99 8.13 -51.93 -0.42 0.56 16 35 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.05 0.51 7.81 -51.93 -0.41 0.10 16 37 H 0.08 0.77 7.32 -51.93 -0.38 0.39 16 38 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 39 H 0.08 0.98 7.51 -51.93 -0.39 0.59 16 40 H 0.09 0.82 7.42 -51.93 -0.39 0.43 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.06 0.90 7.39 -51.93 -0.38 0.52 16 49 H 0.09 1.14 7.46 -51.92 -0.39 0.76 16 50 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -35.20 405.92 -10.41 -45.60 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.16 Total: -2.14 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.23 Total: -1.21 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -1.21 Total: -53.38 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.20 -10.41 -45.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.883 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds