Wall clock time and date at job start Wed Apr 1 2020 04:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38396 * 119.99683 * 2 1 4 4 N 1.32124 * 119.99192 * 179.97438 * 3 2 1 5 5 C 1.32146 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00247 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47038 * 274.99902 * 6 5 4 8 8 C 1.48646 * 111.00084 * 290.12577 * 7 6 5 9 9 C 1.54642 * 104.63364 * 201.49077 * 8 7 6 10 10 C 1.53250 * 104.67647 * 23.68066 * 9 8 7 11 11 C 1.53615 * 111.05504 * 239.01799 * 10 9 8 12 12 C 1.54706 * 101.50972 * 262.68393 * 11 10 9 13 13 N 1.46881 * 105.51455 * 335.46933 * 12 11 10 14 14 C 1.46507 * 124.37154 * 196.78826 * 13 12 11 15 15 C 1.53004 * 109.46773 * 90.00435 * 14 13 12 16 16 C 1.50695 * 109.46637 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00546 * 0.27598 * 16 15 14 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47093 * 60.00328 * 20 18 16 22 22 H 1.48495 * 109.47002 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47239 * 300.00048 * 20 18 16 24 24 C 1.34756 * 111.25708 * 17.06105 * 13 12 11 25 25 O 1.21278 * 125.13512 * 178.73690 * 24 13 12 26 26 C 1.48798 * 110.99973 * 174.50687 * 7 6 5 27 27 C 1.38344 * 120.00288 * 0.25633 * 5 4 3 28 28 N 1.32119 * 120.00533 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46710 * 90.00296 * 1 2 3 30 30 H 1.08998 * 109.47066 * 210.00257 * 1 2 3 31 31 H 1.08995 * 109.47254 * 330.00376 * 1 2 3 32 32 H 1.08001 * 120.00084 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47629 * 155.00095 * 6 5 4 34 34 H 1.09000 * 109.46755 * 34.99501 * 6 5 4 35 35 H 1.08996 * 110.40741 * 82.70085 * 8 7 6 36 36 H 1.08995 * 110.40266 * 320.27930 * 8 7 6 37 37 H 1.09003 * 110.39286 * 264.88295 * 9 8 7 38 38 H 1.08997 * 110.49462 * 142.53496 * 9 8 7 39 39 H 1.08997 * 111.02055 * 144.62343 * 11 10 9 40 40 H 1.09003 * 111.01806 * 20.73748 * 11 10 9 41 41 H 1.08997 * 110.23438 * 216.46202 * 12 11 10 42 42 H 1.08995 * 110.31108 * 94.51899 * 12 11 10 43 43 H 1.09000 * 109.46860 * 330.00633 * 14 13 12 44 44 H 1.08997 * 109.47067 * 209.99984 * 14 13 12 45 45 H 1.08992 * 109.47421 * 60.00163 * 15 14 13 46 46 H 1.08997 * 109.46955 * 299.99616 * 15 14 13 47 47 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 48 48 H 1.09001 * 110.46013 * 39.48479 * 26 7 6 49 49 H 1.09008 * 110.46009 * 276.91608 * 26 7 6 50 50 H 1.07998 * 120.00187 * 179.72090 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1986 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0540 0.0015 6 6 5.6879 0.0540 0.0015 7 7 6.1776 0.1734 -1.3783 8 6 5.9049 -1.0677 -2.1496 9 6 6.9136 -1.0291 -3.3212 10 6 8.0527 -0.1328 -2.8234 11 6 8.2437 1.0805 -3.7460 12 6 9.4058 0.6023 -4.6483 13 7 10.1221 -0.4110 -3.8624 14 6 11.4771 -0.8824 -4.1594 15 6 12.4940 -0.0089 -3.4219 16 6 13.8877 -0.4935 -3.7280 17 1 14.0339 -1.3370 -4.3865 18 6 14.9768 0.1439 -3.1722 19 7 14.7991 1.1744 -2.3746 20 14 16.7044 -0.4572 -3.5509 21 1 16.9480 -0.3740 -5.0134 22 1 17.6914 0.3906 -2.8352 23 1 16.8472 -1.8663 -3.1046 24 6 9.3698 -0.8552 -2.8365 25 8 9.7062 -1.7079 -2.0423 26 6 7.6590 0.3094 -1.4085 27 6 3.4893 -1.1441 -0.0033 28 7 2.1677 -1.1441 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6589 2.1339 -0.0004 33 1 6.0513 -0.8770 0.4366 34 1 6.0513 0.8964 0.5902 35 1 4.8828 -1.0631 -2.5280 36 1 6.0773 -1.9466 -1.5286 37 1 6.4497 -0.5967 -4.2077 38 1 7.2852 -2.0306 -3.5379 39 1 8.5297 1.9642 -3.1756 40 1 7.3453 1.2702 -4.3334 41 1 10.0684 1.4354 -4.8828 42 1 9.0158 0.1616 -5.5658 43 1 11.6560 -0.8209 -5.2329 44 1 11.5817 -1.9168 -3.8323 45 1 12.3151 -0.0704 -2.3486 46 1 12.3894 1.0255 -3.7491 47 1 15.5652 1.6226 -1.9833 48 1 8.1168 -0.3425 -0.6645 49 1 7.9500 1.3461 -1.2387 50 1 4.0293 -2.0794 -0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272815689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:18 Heat of formation + Delta-G solvation = -6.682416 kcal Electronic energy + Delta-G solvation = -29783.001830 eV Core-core repulsion = 25808.895419 eV Total energy + Delta-G solvation = -3974.106411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.31755 -41.96786 -39.23313 -37.50632 -36.14940 -35.48977 -34.53350 -33.59245 -32.07678 -30.59378 -29.84773 -28.87542 -27.04055 -26.14586 -25.67404 -24.42605 -23.52630 -23.24764 -22.05650 -21.63981 -19.95732 -18.74581 -18.68682 -17.69846 -17.24161 -17.18675 -16.84815 -16.71300 -16.31351 -16.19577 -16.09281 -15.60607 -15.27162 -14.91135 -14.74496 -14.51904 -14.30444 -14.22952 -13.89130 -13.74893 -13.59549 -13.46577 -13.37049 -13.19532 -12.92214 -12.82961 -12.72393 -12.61026 -12.51573 -12.50413 -12.31659 -12.05843 -12.00380 -11.97315 -11.74838 -11.60394 -11.43364 -10.70087 -10.59496 -10.07924 -10.02686 -9.60799 -9.55872 -8.24499 -6.37531 -0.24897 0.14986 1.38399 1.42605 1.49556 1.52647 2.10937 2.40094 2.54584 2.93365 3.04224 3.08925 3.21449 3.32028 3.34413 3.50857 3.55587 3.78898 3.89506 4.00623 4.04700 4.17177 4.21159 4.30482 4.33519 4.41841 4.45561 4.48016 4.60163 4.60972 4.65529 4.68507 4.75162 4.77995 4.79190 4.85813 4.87809 4.94391 5.04195 5.05530 5.12629 5.17585 5.32139 5.44722 5.45806 5.57912 5.62030 5.81142 5.81853 6.13981 6.27784 6.33988 6.77540 6.82939 7.18412 7.32324 8.87349 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028571 B = 0.001907 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.792266 B =14678.739710 C =14858.511798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.070 3.930 3 C 0.051 3.949 4 N -0.442 5.442 5 C 0.076 3.924 6 C 0.095 3.905 7 N -0.493 5.493 8 C 0.035 3.965 9 C -0.092 4.092 10 C -0.092 4.092 11 C -0.102 4.102 12 C 0.093 3.907 13 N -0.617 5.617 14 C 0.141 3.859 15 C 0.024 3.976 16 C -0.547 4.547 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.971 3.029 21 H -0.259 1.259 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.511 3.489 25 O -0.583 6.583 26 C 0.058 3.942 27 C 0.057 3.943 28 N -0.462 5.462 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.198 0.802 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.052 0.948 45 H -0.027 1.027 46 H 0.001 0.999 47 H 0.264 0.736 48 H 0.037 0.963 49 H 0.095 0.905 50 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.782 0.744 -0.504 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.071 4.071 3 C -0.110 4.110 4 N -0.157 5.157 5 C -0.064 4.064 6 C -0.034 4.034 7 N -0.217 5.217 8 C -0.093 4.093 9 C -0.131 4.131 10 C -0.096 4.096 11 C -0.139 4.139 12 C -0.029 4.029 13 N -0.348 5.348 14 C 0.020 3.980 15 C -0.014 4.014 16 C -0.585 4.585 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.794 3.206 21 H -0.184 1.184 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.300 3.700 25 O -0.464 6.464 26 C -0.070 4.070 27 C -0.103 4.103 28 N -0.177 5.177 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.215 0.785 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.071 0.929 45 H -0.009 1.009 46 H 0.020 0.980 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.113 0.887 50 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -30.683 0.880 -0.259 30.697 hybrid contribution 2.025 -0.967 0.764 2.370 sum -28.659 -0.087 0.505 28.663 Atomic orbital electron populations 1.20800 0.85259 1.04995 1.04511 1.22935 1.00124 0.89314 0.94720 1.24169 0.90017 1.00529 0.96291 1.68248 1.09694 1.29802 1.07911 1.21926 0.97174 0.89822 0.97464 1.21047 0.88330 1.03035 0.90949 1.65507 1.10128 1.34646 1.11435 1.23255 0.99980 0.91083 0.94956 1.22174 0.92692 0.98778 0.99413 1.21333 0.92529 0.97589 0.98118 1.22711 0.99177 0.95415 0.96641 1.22462 0.94084 0.91090 0.95241 1.48742 1.15239 1.41279 1.29587 1.21372 0.79058 0.97244 1.00352 1.19202 0.93660 0.94856 0.93654 1.21526 0.91964 1.15670 1.29379 0.91511 1.26023 1.04260 0.94905 0.94564 1.70109 1.32261 1.22305 1.32470 0.85423 0.77872 0.78233 0.79045 1.18376 1.20831 1.19554 1.21109 0.87252 0.81851 0.79825 1.90643 1.77559 1.35227 1.42937 1.22882 0.88105 1.01913 0.94090 1.23771 0.90689 0.99561 0.96265 1.68365 1.08839 1.30489 1.10043 0.88814 0.90523 0.87720 0.78521 0.91467 0.88788 0.89048 0.93361 0.87162 0.91805 0.89877 0.85533 0.90344 0.88333 0.89051 0.92926 1.00881 0.98033 0.92689 0.94416 0.88706 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.19 71.24 0.73 0.06 16 2 C 0.07 1.01 6.79 42.55 0.29 1.30 16 3 C 0.05 0.75 10.88 84.69 0.92 1.67 16 4 N -0.44 -8.96 10.42 -183.29 -1.91 -10.87 16 5 C 0.08 1.48 5.93 42.54 0.25 1.73 16 6 C 0.10 1.89 5.15 85.56 0.44 2.33 16 7 N -0.49 -10.45 5.36 -886.63 -4.75 -15.21 16 8 C 0.04 0.67 5.62 86.52 0.49 1.16 16 9 C -0.09 -1.87 6.32 31.24 0.20 -1.67 16 10 C -0.09 -2.36 0.83 -52.66 -0.04 -2.41 16 11 C -0.10 -2.10 6.24 31.38 0.20 -1.90 16 12 C 0.09 2.31 7.36 86.89 0.64 2.95 16 13 N -0.62 -22.37 2.94 -818.15 -2.41 -24.78 16 14 C 0.14 6.11 5.89 86.38 0.51 6.62 16 15 C 0.02 1.33 5.30 29.85 0.16 1.49 16 16 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C 0.00 0.04 5.46 84.66 0.46 0.50 16 19 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 20 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 C 0.51 19.18 6.64 87.51 0.58 19.76 16 25 O -0.58 -27.46 17.09 -3.02 -0.05 -27.51 16 26 C 0.06 1.50 5.65 86.06 0.49 1.99 16 27 C 0.06 1.02 10.34 84.67 0.88 1.90 16 28 N -0.46 -8.64 10.42 -183.29 -1.91 -10.55 16 29 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.19 8.09 -2.39 -0.02 0.17 16 32 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.07 1.23 7.79 -2.39 -0.02 1.21 16 34 H 0.09 1.92 8.13 -2.39 -0.02 1.90 16 35 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 36 H 0.05 0.95 7.81 -2.39 -0.02 0.93 16 37 H 0.11 1.63 7.32 -2.39 -0.02 1.61 16 38 H 0.06 1.46 7.75 -2.39 -0.02 1.44 16 39 H 0.08 1.77 7.51 -2.39 -0.02 1.75 16 40 H 0.13 1.74 7.42 -2.39 -0.02 1.72 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.05 2.44 7.93 -2.39 -0.02 2.42 16 45 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 46 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.04 1.16 7.39 -2.39 -0.02 1.14 16 49 H 0.09 2.37 7.46 -2.38 -0.02 2.35 16 50 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -80.29 405.92 -0.39 -80.68 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.92 Total: 13.00 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 7.41 Total: 6.06 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -10.70 Total: -118.95 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -80.29 -0.39 -80.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.993 kcal (2) G-P(sol) polarization free energy of solvation -80.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds