Wall clock time and date at job start Wed Apr 1 2020 04:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38392 * 119.99856 * 2 1 4 4 N 1.32124 * 119.99705 * 179.97438 * 3 2 1 5 5 C 1.32155 * 120.00036 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99761 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47345 * 274.97077 * 6 5 4 8 8 C 1.48057 * 111.00073 * 66.02697 * 7 6 5 9 9 C 1.54257 * 106.83212 * 146.61370 * 8 7 6 10 10 C 1.54362 * 104.83165 * 358.54821 * 9 8 7 11 11 H 1.08996 * 110.04268 * 95.62564 * 10 9 8 12 12 C 1.49929 * 111.23858 * 184.03395 * 7 6 5 13 13 H 1.08997 * 112.96164 * 79.36937 * 12 7 6 14 14 C 1.53117 * 107.50306 * 314.86837 * 12 7 6 15 15 C 1.52913 * 109.19001 * 184.91108 * 14 12 7 16 16 C 1.50333 * 109.21317 * 52.70061 * 15 14 12 17 17 O 1.21282 * 118.66826 * 159.67879 * 16 15 14 18 18 N 1.33322 * 122.62680 * 337.84414 * 16 15 14 19 19 C 1.46500 * 117.36422 * 182.12839 * 18 16 15 20 20 C 1.53006 * 109.47128 * 269.74021 * 19 18 16 21 21 C 1.50702 * 109.46956 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99864 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99551 * 179.97438 * 21 20 19 24 24 N 1.31505 * 120.00537 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99649 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47355 * 270.00071 * 25 23 21 27 27 H 1.48500 * 109.47009 * 30.00002 * 25 23 21 28 28 H 1.48494 * 109.46967 * 149.99809 * 25 23 21 29 29 C 1.38341 * 120.00180 * 0.25879 * 5 4 3 30 30 N 1.32125 * 120.00446 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47166 * 90.00044 * 1 2 3 32 32 H 1.09006 * 109.47159 * 210.00019 * 1 2 3 33 33 H 1.09000 * 109.47083 * 329.99742 * 1 2 3 34 34 H 1.08003 * 120.00105 * 359.95437 * 3 2 1 35 35 H 1.09001 * 109.46635 * 154.97007 * 6 5 4 36 36 H 1.09000 * 109.47392 * 34.96968 * 6 5 4 37 37 H 1.08995 * 109.98599 * 27.27009 * 8 7 6 38 38 H 1.09005 * 109.98630 * 265.95812 * 8 7 6 39 39 H 1.09006 * 110.36585 * 239.70681 * 9 8 7 40 40 H 1.09000 * 110.46423 * 117.43937 * 9 8 7 41 41 H 1.09004 * 109.51489 * 304.82139 * 14 12 7 42 42 H 1.08994 * 109.51616 * 64.93562 * 14 12 7 43 43 H 1.09001 * 109.48113 * 172.11107 * 15 14 12 44 44 H 1.08997 * 109.48218 * 292.14312 * 15 14 12 45 45 H 1.08997 * 109.47264 * 149.73483 * 19 18 16 46 46 H 1.09001 * 109.47012 * 29.73711 * 19 18 16 47 47 H 1.08993 * 109.47049 * 59.99838 * 20 19 18 48 48 H 1.09001 * 109.46921 * 299.99746 * 20 19 18 49 49 H 0.97008 * 120.00023 * 359.97438 * 24 23 21 50 50 H 1.08003 * 119.99621 * 179.72388 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0540 0.0015 6 6 5.6879 0.0540 0.0015 7 7 6.1776 0.1728 -1.3783 8 6 5.8250 1.4901 -1.9549 9 6 6.9715 1.8809 -2.9101 10 6 7.9896 0.7260 -2.7988 11 1 7.8265 0.0057 -3.6003 12 6 7.6730 0.0789 -1.4339 13 1 8.0372 -0.9466 -1.3732 14 6 8.2317 0.9622 -0.3149 15 6 9.7574 0.9922 -0.4127 16 6 10.1561 1.3821 -1.8087 17 8 11.2720 1.8195 -1.9944 18 7 9.3448 1.2330 -2.8561 19 6 9.8686 1.6069 -4.1722 20 6 9.5566 3.0796 -4.4459 21 6 10.0960 3.4642 -5.7994 22 1 10.6103 2.7317 -6.4038 23 6 9.9328 4.7513 -6.2661 24 7 9.3061 5.6431 -5.5304 25 14 10.6021 5.2283 -7.9437 26 1 11.9949 5.7226 -7.7987 27 1 10.5881 4.0426 -8.8376 28 1 9.7553 6.2989 -8.5282 29 6 3.4892 -1.1441 -0.0033 30 7 2.1677 -1.1442 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6589 2.1339 -0.0007 35 1 6.0512 -0.8768 0.4372 36 1 6.0513 0.8967 0.5898 37 1 5.7322 2.2314 -1.1613 38 1 4.8884 1.4162 -2.5076 39 1 7.4262 2.8195 -2.5930 40 1 6.6036 1.9651 -3.9327 41 1 7.8401 1.9740 -0.4198 42 1 7.9358 0.5555 0.6521 43 1 10.1523 1.7264 0.2895 44 1 10.1566 0.0070 -0.1714 45 1 9.4016 0.9880 -4.9383 46 1 10.9478 1.4547 -4.1903 47 1 10.0236 3.6983 -3.6797 48 1 8.4774 3.2317 -4.4278 49 1 8.9582 5.3953 -4.6594 50 1 4.0293 -2.0794 -0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272815883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:05 Heat of formation + Delta-G solvation = 17.721331 kcal Electronic energy + Delta-G solvation = -30726.770116 eV Core-core repulsion = 26753.721931 eV Total energy + Delta-G solvation = -3973.048185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58434 -40.89006 -38.56546 -35.75671 -34.89602 -33.87693 -33.26536 -32.97214 -31.43270 -29.27423 -28.72415 -27.88293 -25.35106 -24.97039 -24.73952 -23.65088 -22.48069 -22.04533 -20.95922 -20.43441 -18.18376 -17.95851 -16.85050 -16.79712 -16.51495 -16.29908 -16.21565 -15.79541 -15.30203 -15.02148 -14.55996 -14.40551 -13.90291 -13.67792 -13.56051 -13.49177 -13.24532 -13.03217 -12.88848 -12.78592 -12.58371 -12.42852 -12.15875 -12.10775 -11.86671 -11.79057 -11.58632 -11.44023 -11.39002 -11.31250 -11.00512 -10.77212 -10.64953 -10.19012 -10.05513 -9.94784 -9.43092 -9.37030 -9.29081 -8.64754 -8.59415 -8.28608 -8.12944 -6.33892 -4.02202 0.42208 0.82897 2.99381 3.13117 3.40112 3.46628 3.49655 3.62281 3.64922 3.79964 3.93823 4.11951 4.28881 4.31904 4.52483 4.57935 4.63508 4.68207 4.74563 4.81360 5.02955 5.06610 5.12458 5.13775 5.15400 5.24008 5.24778 5.27599 5.35507 5.39560 5.44755 5.53420 5.64475 5.65300 5.73807 5.83198 5.99244 6.04885 6.08777 6.14642 6.24227 6.45260 6.53947 6.62076 6.75316 6.83947 6.98580 7.41843 7.48362 7.52877 7.95888 8.21592 8.48233 8.59644 8.90333 9.69816 11.07088 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.002658 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.305224 B =10532.195882 C =12044.502464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.074 3.926 3 C 0.053 3.947 4 N -0.427 5.427 5 C 0.081 3.919 6 C 0.097 3.903 7 N -0.509 5.509 8 C 0.046 3.954 9 C -0.142 4.142 10 C 0.150 3.850 11 H 0.093 0.907 12 C 0.064 3.936 13 H 0.111 0.889 14 C -0.151 4.151 15 C -0.130 4.130 16 C 0.509 3.491 17 O -0.547 6.547 18 N -0.592 5.592 19 C 0.116 3.884 20 C 0.001 3.999 21 C -0.599 4.599 22 H 0.049 0.951 23 C 0.016 3.984 24 N -0.913 5.913 25 Si 1.072 2.928 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.285 1.285 29 C 0.075 3.925 30 N -0.441 5.441 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.010 0.990 48 H 0.012 0.988 49 H 0.268 0.732 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 -15.009 15.434 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.067 4.067 3 C -0.107 4.107 4 N -0.142 5.142 5 C -0.059 4.059 6 C -0.032 4.032 7 N -0.233 5.233 8 C -0.082 4.082 9 C -0.181 4.181 10 C 0.045 3.955 11 H 0.111 0.889 12 C -0.044 4.044 13 H 0.129 0.871 14 C -0.190 4.190 15 C -0.171 4.171 16 C 0.297 3.703 17 O -0.425 6.425 18 N -0.323 5.323 19 C -0.005 4.005 20 C -0.037 4.037 21 C -0.638 4.638 22 H 0.068 0.932 23 C -0.188 4.188 24 N -0.549 5.549 25 Si 0.900 3.100 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.210 1.210 29 C -0.086 4.086 30 N -0.157 5.157 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.185 0.815 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.028 0.972 48 H 0.030 0.970 49 H 0.078 0.922 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.512 -13.954 14.001 25.127 hybrid contribution 0.062 -0.536 1.517 1.610 sum -15.450 -14.490 15.518 26.258 Atomic orbital electron populations 1.20685 0.87755 1.03859 1.03574 1.22338 0.98513 0.89781 0.96069 1.23609 0.90556 0.99228 0.97324 1.68274 1.08701 1.29465 1.07790 1.22045 0.97527 0.89716 0.96636 1.21089 0.87704 1.03092 0.91320 1.65020 1.09608 1.31976 1.16655 1.22888 0.98654 0.89082 0.97608 1.22976 0.95163 0.99151 1.00851 1.21372 0.81752 0.95254 0.97155 0.88923 1.23269 0.87116 0.99816 0.94236 0.87070 1.22253 0.95611 1.01537 0.99601 1.21576 0.96258 1.04160 0.95099 1.19994 0.85045 0.78572 0.86689 1.90743 1.20709 1.45639 1.85362 1.47236 1.12892 1.62973 1.09216 1.21796 0.99626 0.98850 0.80272 1.19536 0.96356 0.90473 0.97314 1.21955 1.40446 0.98837 1.02555 0.93246 1.25824 0.95450 0.92892 1.04633 1.70746 1.35181 1.36440 1.12525 0.83508 0.76306 0.75558 0.74604 1.21440 1.21468 1.21045 1.23560 0.90284 0.99301 0.95440 1.68321 1.08770 1.29340 1.09226 0.89910 0.90220 0.90219 0.81492 0.88553 0.91688 0.92493 0.90700 0.90168 0.90014 0.90671 0.90382 0.88483 0.88472 0.91838 0.90501 0.97177 0.96971 0.92181 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.19 36.00 0.37 -0.15 16 2 C 0.07 0.62 6.79 -82.41 -0.56 0.06 16 3 C 0.05 0.46 10.88 -17.37 -0.19 0.27 16 4 N -0.43 -4.51 9.75 -9.29 -0.09 -4.60 16 5 C 0.08 0.78 5.86 -82.41 -0.48 0.29 16 6 C 0.10 0.82 4.13 -4.98 -0.02 0.80 16 7 N -0.51 -5.20 5.24 -222.91 -1.17 -6.37 16 8 C 0.05 0.56 4.93 -2.53 -0.01 0.54 16 9 C -0.14 -2.10 4.60 -25.36 -0.12 -2.21 16 10 C 0.15 2.09 3.14 -67.42 -0.21 1.88 16 11 H 0.09 1.26 7.98 -51.93 -0.41 0.84 16 12 C 0.06 0.66 3.58 -65.26 -0.23 0.43 16 13 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 14 C -0.15 -1.54 3.98 -26.72 -0.11 -1.65 16 15 C -0.13 -1.59 6.08 -28.11 -0.17 -1.76 16 16 C 0.51 9.16 7.47 -11.81 -0.09 9.07 16 17 O -0.55 -12.54 16.19 5.56 0.09 -12.45 16 18 N -0.59 -10.39 2.46 -166.29 -0.41 -10.80 16 19 C 0.12 2.49 5.07 -4.04 -0.02 2.47 16 20 C 0.00 0.03 4.31 -27.88 -0.12 -0.09 16 21 C -0.60 -17.43 9.11 -34.44 -0.31 -17.74 16 22 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 23 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 24 N -0.91 -28.58 13.65 55.43 0.76 -27.82 16 25 Si 1.07 25.96 29.90 -169.99 -5.08 20.88 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 29 C 0.07 0.67 10.86 -17.38 -0.19 0.48 16 30 N -0.44 -4.38 10.42 -9.29 -0.10 -4.48 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 34 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.10 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.07 0.57 6.31 -51.93 -0.33 0.25 16 37 H 0.06 0.72 7.28 -51.93 -0.38 0.34 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.39 7.48 -51.93 -0.39 1.00 16 40 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 41 H 0.07 0.90 6.72 -51.93 -0.35 0.56 16 42 H 0.08 0.60 6.66 -51.93 -0.35 0.25 16 43 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.27 7.88 -51.93 -0.41 0.86 16 46 H 0.08 1.81 7.14 -51.93 -0.37 1.44 16 47 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 48 H 0.01 0.32 6.15 -51.93 -0.32 0.00 16 49 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 50 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -36.18 391.12 -10.53 -46.70 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.85 Total: -0.02 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.56 Total: -6.94 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -1.01 Total: -54.07 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.18 -10.53 -46.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.426 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds