Wall clock time and date at job start Wed Apr 1 2020 04:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38392 * 119.99856 * 2 1 4 4 N 1.32124 * 119.99705 * 179.97438 * 3 2 1 5 5 C 1.32155 * 120.00036 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99761 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47345 * 274.97077 * 6 5 4 8 8 C 1.48057 * 111.00073 * 66.02697 * 7 6 5 9 9 C 1.54257 * 106.83212 * 146.61370 * 8 7 6 10 10 C 1.54362 * 104.83165 * 358.54821 * 9 8 7 11 11 H 1.08996 * 110.04268 * 95.62564 * 10 9 8 12 12 C 1.49929 * 111.23858 * 184.03395 * 7 6 5 13 13 H 1.08997 * 112.96164 * 79.36937 * 12 7 6 14 14 C 1.53117 * 107.50306 * 314.86837 * 12 7 6 15 15 C 1.52913 * 109.19001 * 184.91108 * 14 12 7 16 16 C 1.50333 * 109.21317 * 52.70061 * 15 14 12 17 17 O 1.21282 * 118.66826 * 159.67879 * 16 15 14 18 18 N 1.33322 * 122.62680 * 337.84414 * 16 15 14 19 19 C 1.46500 * 117.36422 * 182.12839 * 18 16 15 20 20 C 1.53006 * 109.47128 * 269.74021 * 19 18 16 21 21 C 1.50702 * 109.46956 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99864 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99551 * 179.97438 * 21 20 19 24 24 N 1.31505 * 120.00537 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99649 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47355 * 270.00071 * 25 23 21 27 27 H 1.48500 * 109.47009 * 30.00002 * 25 23 21 28 28 H 1.48494 * 109.46967 * 149.99809 * 25 23 21 29 29 C 1.38341 * 120.00180 * 0.25879 * 5 4 3 30 30 N 1.32125 * 120.00446 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47166 * 90.00044 * 1 2 3 32 32 H 1.09006 * 109.47159 * 210.00019 * 1 2 3 33 33 H 1.09000 * 109.47083 * 329.99742 * 1 2 3 34 34 H 1.08003 * 120.00105 * 359.95437 * 3 2 1 35 35 H 1.09001 * 109.46635 * 154.97007 * 6 5 4 36 36 H 1.09000 * 109.47392 * 34.96968 * 6 5 4 37 37 H 1.08995 * 109.98599 * 27.27009 * 8 7 6 38 38 H 1.09005 * 109.98630 * 265.95812 * 8 7 6 39 39 H 1.09006 * 110.36585 * 239.70681 * 9 8 7 40 40 H 1.09000 * 110.46423 * 117.43937 * 9 8 7 41 41 H 1.09004 * 109.51489 * 304.82139 * 14 12 7 42 42 H 1.08994 * 109.51616 * 64.93562 * 14 12 7 43 43 H 1.09001 * 109.48113 * 172.11107 * 15 14 12 44 44 H 1.08997 * 109.48218 * 292.14312 * 15 14 12 45 45 H 1.08997 * 109.47264 * 149.73483 * 19 18 16 46 46 H 1.09001 * 109.47012 * 29.73711 * 19 18 16 47 47 H 1.08993 * 109.47049 * 59.99838 * 20 19 18 48 48 H 1.09001 * 109.46921 * 299.99746 * 20 19 18 49 49 H 0.97008 * 120.00023 * 359.97438 * 24 23 21 50 50 H 1.08003 * 119.99621 * 179.72388 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0540 0.0015 6 6 5.6879 0.0540 0.0015 7 7 6.1776 0.1728 -1.3783 8 6 5.8250 1.4901 -1.9549 9 6 6.9715 1.8809 -2.9101 10 6 7.9896 0.7260 -2.7988 11 1 7.8265 0.0057 -3.6003 12 6 7.6730 0.0789 -1.4339 13 1 8.0372 -0.9466 -1.3732 14 6 8.2317 0.9622 -0.3149 15 6 9.7574 0.9922 -0.4127 16 6 10.1561 1.3821 -1.8087 17 8 11.2720 1.8195 -1.9944 18 7 9.3448 1.2330 -2.8561 19 6 9.8686 1.6069 -4.1722 20 6 9.5566 3.0796 -4.4459 21 6 10.0960 3.4642 -5.7994 22 1 10.6103 2.7317 -6.4038 23 6 9.9328 4.7513 -6.2661 24 7 9.3061 5.6431 -5.5304 25 14 10.6021 5.2283 -7.9437 26 1 11.9949 5.7226 -7.7987 27 1 10.5881 4.0426 -8.8376 28 1 9.7553 6.2989 -8.5282 29 6 3.4892 -1.1441 -0.0033 30 7 2.1677 -1.1442 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6589 2.1339 -0.0007 35 1 6.0512 -0.8768 0.4372 36 1 6.0513 0.8967 0.5898 37 1 5.7322 2.2314 -1.1613 38 1 4.8884 1.4162 -2.5076 39 1 7.4262 2.8195 -2.5930 40 1 6.6036 1.9651 -3.9327 41 1 7.8401 1.9740 -0.4198 42 1 7.9358 0.5555 0.6521 43 1 10.1523 1.7264 0.2895 44 1 10.1566 0.0070 -0.1714 45 1 9.4016 0.9880 -4.9383 46 1 10.9478 1.4547 -4.1903 47 1 10.0236 3.6983 -3.6797 48 1 8.4774 3.2317 -4.4278 49 1 8.9582 5.3953 -4.6594 50 1 4.0293 -2.0794 -0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272815883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:03 Heat of formation + Delta-G solvation = -8.509498 kcal Electronic energy + Delta-G solvation = -30727.907570 eV Core-core repulsion = 26753.721931 eV Total energy + Delta-G solvation = -3974.185639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.39646 -41.92520 -39.80538 -37.15586 -35.99407 -35.24807 -34.41208 -34.06735 -32.46241 -31.02297 -29.60762 -28.88755 -26.61557 -26.04059 -25.59490 -24.97280 -23.79065 -23.17128 -22.45024 -21.39168 -19.27933 -18.98754 -18.68984 -18.02775 -17.64988 -17.28895 -17.07960 -16.64407 -16.30609 -16.06222 -15.69873 -15.55045 -15.39126 -15.25043 -14.81052 -14.66513 -14.25876 -14.18206 -13.86479 -13.77079 -13.69823 -13.54740 -13.29203 -13.11361 -12.98845 -12.81040 -12.73823 -12.55347 -12.53005 -12.43876 -12.17719 -12.06190 -12.04681 -11.93305 -11.80651 -11.73624 -10.95531 -10.60192 -10.57952 -10.04379 -10.01366 -9.74177 -9.46223 -8.75343 -6.45209 -0.19781 0.17550 1.48446 1.58220 1.58569 1.76231 1.94488 2.52573 2.56479 2.95231 3.11241 3.12475 3.27127 3.33653 3.41975 3.55114 3.62028 3.75200 3.83054 3.98374 4.03872 4.11575 4.12940 4.18526 4.26862 4.31640 4.34947 4.50068 4.52468 4.63310 4.66197 4.71120 4.75430 4.76641 4.76942 4.79980 4.82166 4.87018 4.92198 4.96445 5.12740 5.13128 5.20601 5.31191 5.41507 5.48308 5.62021 5.84270 5.93504 6.11220 6.36435 6.48764 6.53499 6.85508 7.15263 7.37549 8.65141 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.002658 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.305224 B =10532.195882 C =12044.502464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.069 3.931 3 C 0.042 3.958 4 N -0.455 5.455 5 C 0.068 3.932 6 C 0.097 3.903 7 N -0.502 5.502 8 C 0.064 3.936 9 C -0.140 4.140 10 C 0.142 3.858 11 H 0.102 0.898 12 C 0.078 3.922 13 H 0.147 0.853 14 C -0.145 4.145 15 C -0.117 4.117 16 C 0.497 3.503 17 O -0.607 6.607 18 N -0.588 5.588 19 C 0.129 3.871 20 C 0.013 3.987 21 C -0.618 4.618 22 H 0.054 0.946 23 C -0.040 4.040 24 N -0.935 5.935 25 Si 1.122 2.878 26 H -0.276 1.276 27 H -0.263 1.263 28 H -0.279 1.279 29 C 0.072 3.928 30 N -0.465 5.465 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.133 0.867 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.135 0.865 45 H 0.082 0.918 46 H 0.054 0.946 47 H -0.035 1.035 48 H 0.006 0.994 49 H 0.251 0.749 50 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.014 -17.605 16.377 29.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.071 4.071 3 C -0.118 4.118 4 N -0.170 5.170 5 C -0.072 4.072 6 C -0.031 4.031 7 N -0.226 5.226 8 C -0.065 4.065 9 C -0.180 4.180 10 C 0.037 3.963 11 H 0.120 0.880 12 C -0.030 4.030 13 H 0.164 0.836 14 C -0.183 4.183 15 C -0.157 4.157 16 C 0.288 3.712 17 O -0.489 6.489 18 N -0.318 5.318 19 C 0.006 3.994 20 C -0.025 4.025 21 C -0.656 4.656 22 H 0.072 0.928 23 C -0.237 4.237 24 N -0.573 5.573 25 Si 0.943 3.057 26 H -0.202 1.202 27 H -0.188 1.188 28 H -0.205 1.205 29 C -0.088 4.088 30 N -0.181 5.181 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.205 0.795 35 H 0.151 0.849 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.139 0.861 43 H 0.118 0.882 44 H 0.153 0.847 45 H 0.100 0.900 46 H 0.073 0.927 47 H -0.017 1.017 48 H 0.024 0.976 49 H 0.061 0.939 50 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.600 -16.592 14.980 27.843 hybrid contribution 0.319 0.302 1.247 1.322 sum -16.281 -16.290 16.227 28.173 Atomic orbital electron populations 1.20777 0.85703 1.04914 1.04239 1.22811 0.99935 0.89404 0.94961 1.23992 0.90282 1.00332 0.97203 1.68262 1.09738 1.30451 1.08537 1.22234 0.98066 0.89723 0.97224 1.21255 0.87144 1.04879 0.89815 1.65047 1.09333 1.29909 1.18310 1.22609 0.96864 0.90309 0.96688 1.22840 0.96532 0.98196 1.00389 1.21676 0.79153 0.94954 1.00469 0.87969 1.23340 0.87136 1.01091 0.91417 0.83565 1.22267 0.93806 1.00614 1.01658 1.21596 0.97805 1.05974 0.90321 1.21223 0.84101 0.77090 0.88820 1.90711 1.23407 1.48306 1.86480 1.47229 1.14329 1.62545 1.07672 1.21333 0.98691 0.96007 0.83335 1.19358 0.95149 0.92999 0.94986 1.22413 1.40233 0.99301 1.03634 0.92787 1.27526 0.94842 0.93198 1.08093 1.70892 1.36932 1.37119 1.12324 0.82892 0.76110 0.76389 0.70354 1.20202 1.18758 1.20486 1.23953 0.90201 1.00069 0.94544 1.68381 1.09448 1.30081 1.10151 0.89280 0.90234 0.88109 0.79544 0.84876 0.91835 0.93084 0.91497 0.93742 0.91936 0.93074 0.86128 0.88199 0.84738 0.90006 0.92710 1.01681 0.97622 0.93933 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.19 71.24 0.73 -0.12 16 2 C 0.07 1.07 6.79 42.55 0.29 1.36 16 3 C 0.04 0.68 10.88 84.69 0.92 1.60 16 4 N -0.45 -9.06 9.75 -183.29 -1.79 -10.85 16 5 C 0.07 1.15 5.86 42.54 0.25 1.40 16 6 C 0.10 1.30 4.13 85.56 0.35 1.65 16 7 N -0.50 -8.90 5.24 -859.15 -4.50 -13.41 16 8 C 0.06 1.54 4.93 86.51 0.43 1.97 16 9 C -0.14 -4.32 4.60 31.48 0.14 -4.18 16 10 C 0.14 3.85 3.14 46.22 0.14 3.99 16 11 H 0.10 2.62 7.98 -2.39 -0.02 2.60 16 12 C 0.08 1.36 3.58 44.81 0.16 1.53 16 13 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 14 C -0.14 -2.51 3.98 30.60 0.12 -2.39 16 15 C -0.12 -2.57 6.08 29.70 0.18 -2.39 16 16 C 0.50 18.06 7.47 87.77 0.66 18.71 16 17 O -0.61 -29.05 16.19 -3.04 -0.05 -29.10 16 18 N -0.59 -21.02 2.46 -799.22 -1.96 -22.98 16 19 C 0.13 5.81 5.07 86.38 0.44 6.25 16 20 C 0.01 0.72 4.31 29.85 0.13 0.85 16 21 C -0.62 -37.12 9.11 25.60 0.23 -36.89 16 22 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 23 C -0.04 -2.40 5.46 84.66 0.46 -1.94 16 24 N -0.94 -60.82 13.65 21.45 0.29 -60.52 16 25 Si 1.12 52.37 29.90 68.60 2.05 54.42 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 29 C 0.07 1.12 10.86 84.67 0.92 2.04 16 30 N -0.46 -8.44 10.42 -183.29 -1.91 -10.35 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.10 0.41 8.09 -2.39 -0.02 0.40 16 34 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.13 0.84 8.05 -2.39 -0.02 0.82 16 36 H 0.06 0.91 6.31 -2.39 -0.02 0.89 16 37 H 0.05 1.30 7.28 -2.39 -0.02 1.29 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.04 1.67 7.48 -2.38 -0.02 1.65 16 40 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 41 H 0.05 1.17 6.72 -2.38 -0.02 1.15 16 42 H 0.12 1.19 6.66 -2.39 -0.02 1.17 16 43 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.08 3.33 7.88 -2.39 -0.02 3.31 16 46 H 0.05 2.70 7.14 -2.39 -0.02 2.68 16 47 H -0.04 -2.25 8.01 -2.39 -0.02 -2.27 16 48 H 0.01 0.31 6.15 -2.39 -0.01 0.30 16 49 H 0.25 16.74 7.22 -92.70 -0.67 16.07 16 50 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -85.15 391.12 -0.28 -85.43 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.04 Total: 13.90 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 6.55 Total: -6.56 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -9.87 Total: -118.10 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.10 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.42 kcal Total: -85.15 -0.28 -85.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.921 kcal (2) G-P(sol) polarization free energy of solvation -85.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds