Wall clock time and date at job start Wed Apr 1 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32349 * 120.44943 * 2 1 4 4 C 1.31784 * 120.82124 * 180.29075 * 3 2 1 5 5 N 1.31810 * 121.75029 * 359.70622 * 4 3 2 6 6 C 1.32317 * 120.82372 * 0.02562 * 5 4 3 7 7 C 1.38584 * 120.44783 * 179.72433 * 2 1 3 8 8 C 1.50691 * 120.79837 * 359.97438 * 7 2 1 9 9 N 1.46900 * 109.47081 * 285.33400 * 8 7 2 10 10 C 1.48647 * 111.00020 * 284.26355 * 9 8 7 11 11 C 1.54642 * 104.63419 * 201.48866 * 10 9 8 12 12 C 1.53257 * 104.67356 * 23.68789 * 11 10 9 13 13 C 1.53608 * 111.08059 * 120.47133 * 12 11 10 14 14 C 1.54872 * 101.43932 * 97.11096 * 13 12 11 15 15 N 1.46885 * 105.43831 * 24.84397 * 14 13 12 16 16 C 1.46500 * 124.37478 * 163.08248 * 15 14 13 17 17 C 1.52997 * 109.46735 * 269.72360 * 16 15 14 18 18 C 1.50699 * 109.47084 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99836 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00596 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99249 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47225 * 90.00182 * 22 20 18 24 24 H 1.48507 * 109.46891 * 210.00015 * 22 20 18 25 25 H 1.48497 * 109.47311 * 329.99648 * 22 20 18 26 26 C 1.34754 * 111.25121 * 342.81096 * 15 14 13 27 27 O 1.21285 * 125.13203 * 181.27741 * 26 15 14 28 28 C 1.48805 * 111.00289 * 168.64503 * 9 8 7 29 29 H 1.09002 * 109.46688 * 274.55211 * 1 2 3 30 30 H 1.09003 * 109.47327 * 34.55234 * 1 2 3 31 31 H 1.08998 * 109.46957 * 154.55880 * 1 2 3 32 32 H 1.08001 * 119.12467 * 179.69045 * 4 3 2 33 33 H 1.07993 * 120.45000 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46855 * 165.33627 * 8 7 2 35 35 H 1.09001 * 109.47548 * 45.33448 * 8 7 2 36 36 H 1.08998 * 110.40940 * 82.69661 * 10 9 8 37 37 H 1.09007 * 110.50410 * 320.32489 * 10 9 8 38 38 H 1.09001 * 110.40022 * 264.88656 * 11 10 9 39 39 H 1.09003 * 110.39657 * 142.48310 * 11 10 9 40 40 H 1.08995 * 111.02037 * 215.37047 * 13 12 11 41 41 H 1.09001 * 111.01422 * 339.21862 * 13 12 11 42 42 H 1.08999 * 110.38225 * 265.80658 * 14 13 12 43 43 H 1.09002 * 110.17698 * 143.77135 * 14 13 12 44 44 H 1.08993 * 109.46853 * 149.72321 * 16 15 14 45 45 H 1.08994 * 109.46809 * 29.71842 * 16 15 14 46 46 H 1.08994 * 109.47712 * 59.99845 * 17 16 15 47 47 H 1.09004 * 109.47116 * 299.99536 * 17 16 15 48 48 H 0.97006 * 119.99622 * 179.97438 * 21 20 18 49 49 H 1.09009 * 110.45364 * 39.47746 * 28 9 8 50 50 H 1.09004 * 110.45635 * 276.91584 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1777 1.1409 0.0000 4 6 3.4955 1.1495 -0.0057 5 7 4.1964 0.0332 -0.0059 6 6 3.5946 -1.1452 -0.0008 7 6 2.2093 -1.1947 0.0057 8 6 1.4844 -2.5158 0.0127 9 7 0.9282 -2.7622 1.3498 10 6 1.9925 -3.1760 2.3015 11 6 1.2393 -3.9110 3.4345 12 6 -0.0654 -4.3883 2.7874 13 6 -0.1920 -5.9173 2.8620 14 6 -1.0857 -6.0907 4.1149 15 7 -1.8388 -4.8353 4.2349 16 6 -3.0473 -4.6700 5.0463 17 6 -4.2795 -4.9842 4.1956 18 6 -5.5228 -4.8136 5.0300 19 1 -5.4420 -4.5116 6.0638 20 6 -6.7633 -5.0429 4.4737 21 7 -6.8616 -5.4101 3.2147 22 14 -8.3043 -4.8321 5.5083 23 1 -8.7880 -3.4326 5.3964 24 1 -9.3572 -5.7600 5.0227 25 1 -7.9928 -5.1362 6.9280 26 6 -1.2710 -3.8537 3.5069 27 8 -1.6725 -2.7111 3.4425 28 6 -0.0176 -3.9108 1.3308 29 1 -0.3633 0.0816 1.0245 30 1 -0.3634 0.8464 -0.5829 31 1 -0.3633 -0.9280 -0.4415 32 1 4.0150 2.0964 -0.0107 33 1 4.1748 -2.0560 -0.0014 34 1 2.1811 -3.3138 -0.2437 35 1 0.6759 -2.4906 -0.7180 36 1 2.5116 -2.3019 2.6948 37 1 2.6986 -3.8494 1.8154 38 1 1.0277 -3.2268 4.2563 39 1 1.8215 -4.7620 3.7880 40 1 -0.6800 -6.3131 1.9714 41 1 0.7819 -6.3834 3.0114 42 1 -0.4708 -6.2476 5.0011 43 1 -1.7692 -6.9285 3.9762 44 1 -3.1060 -3.6426 5.4054 45 1 -3.0098 -5.3506 5.8968 46 1 -4.2208 -6.0116 3.8364 47 1 -4.3170 -4.3036 3.3451 48 1 -7.7344 -5.5719 2.8234 49 1 0.3578 -4.7026 0.6825 50 1 -1.0053 -3.5856 1.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274129577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:02 Heat of formation + Delta-G solvation = 20.353031 kcal Electronic energy + Delta-G solvation = -30446.343193 eV Core-core repulsion = 26473.409128 eV Total energy + Delta-G solvation = -3972.934066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40389 -40.83994 -38.12378 -35.98065 -34.92345 -34.32745 -33.37222 -32.07086 -30.40609 -29.29768 -28.83634 -27.97651 -26.44224 -25.04144 -23.55074 -23.18991 -22.80164 -21.90803 -21.17755 -20.22456 -18.61113 -17.97366 -16.98873 -16.69333 -16.46533 -16.01634 -15.60322 -15.38394 -15.02138 -14.74878 -14.47440 -14.40085 -14.15658 -13.95048 -13.56892 -13.39082 -13.14133 -13.01432 -12.77320 -12.70494 -12.41722 -12.30179 -12.21205 -12.16723 -11.97128 -11.91057 -11.43458 -11.30710 -11.11348 -10.95622 -10.80752 -10.74862 -10.68877 -10.65175 -9.99724 -9.87887 -9.55982 -9.40165 -9.32556 -9.06497 -8.67791 -8.38597 -8.00196 -6.04006 -4.07265 0.65928 0.88113 3.01744 3.30939 3.36790 3.39196 3.45279 3.55683 3.79713 3.88297 3.96186 4.24979 4.29220 4.31763 4.37103 4.44450 4.59415 4.62291 4.79148 4.92718 5.05053 5.06764 5.14353 5.26855 5.30418 5.32376 5.33628 5.39650 5.42954 5.53776 5.60477 5.63750 5.70497 5.74921 5.77409 5.82350 5.92617 5.96160 6.06121 6.06913 6.27348 6.46529 6.55903 6.71573 6.80294 6.80541 7.01844 7.50701 7.65961 7.84964 7.89102 7.96076 8.32591 8.72322 8.99519 9.56875 11.07410 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002408 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.797191 B =11625.941935 C =12664.279929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.204 3.796 3 N -0.524 5.524 4 C 0.292 3.708 5 N -0.530 5.530 6 C 0.152 3.848 7 C -0.183 4.183 8 C 0.091 3.909 9 N -0.496 5.496 10 C 0.037 3.963 11 C -0.099 4.099 12 C -0.100 4.100 13 C -0.123 4.123 14 C 0.102 3.898 15 N -0.614 5.614 16 C 0.128 3.872 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.528 3.472 27 O -0.516 6.516 28 C 0.060 3.940 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.193 0.807 33 H 0.162 0.838 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.261 0.739 49 H 0.055 0.945 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.146 1.302 -7.032 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.058 3.942 3 N -0.238 5.238 4 C 0.004 3.996 5 N -0.244 5.244 6 C -0.014 4.014 7 C -0.187 4.187 8 C -0.038 4.038 9 N -0.220 5.220 10 C -0.091 4.091 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.161 4.161 14 C -0.021 4.021 15 N -0.348 5.348 16 C 0.008 3.992 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.313 3.687 27 O -0.391 6.391 28 C -0.068 4.068 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.210 0.790 33 H 0.179 0.821 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 22.924 3.245 -6.981 24.183 hybrid contribution -0.875 -1.533 0.269 1.785 sum 22.050 1.713 -6.713 23.112 Atomic orbital electron populations 1.20802 0.87192 1.03379 1.04768 1.21691 0.97921 0.87301 0.87292 1.68324 1.10259 1.30515 1.14714 1.24924 0.86943 0.96912 0.90814 1.68396 1.41882 0.99140 1.14950 1.23085 0.91370 0.96308 0.90657 1.21340 0.95577 0.97339 1.04477 1.21026 0.98168 0.92207 0.92399 1.65474 1.12727 1.37607 1.06152 1.23184 0.93560 0.98730 0.93655 1.22149 0.93302 1.00193 0.98099 1.21405 0.96106 0.96329 0.96554 1.22720 1.00764 0.93545 0.99058 1.22070 0.94549 0.88273 0.97241 1.48650 1.27559 1.10616 1.47974 1.21778 0.82856 1.01331 0.93189 1.19392 0.90418 0.97103 0.95580 1.21090 0.90921 1.46600 0.97463 0.92508 1.24998 0.99193 0.95087 0.94988 1.69975 1.24233 1.46691 1.12290 0.86556 0.82727 0.78059 0.80441 1.20550 1.21206 1.19825 1.20048 0.83782 0.85222 0.79641 1.90715 1.66699 1.18141 1.63507 1.22905 0.98391 0.91510 0.94011 0.88450 0.90590 0.90023 0.78995 0.82095 0.93054 0.88942 0.90427 0.93494 0.90549 0.90255 0.89709 0.89483 0.91682 0.90137 0.91192 0.91756 0.96531 0.96119 0.92945 0.92683 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 9.87 36.01 0.36 -0.77 16 2 C 0.20 2.32 6.82 -82.24 -0.56 1.76 16 3 N -0.52 -6.26 10.38 -10.80 -0.11 -6.37 16 4 C 0.29 3.02 12.29 -92.15 -1.13 1.89 16 5 N -0.53 -5.59 10.44 -14.58 -0.15 -5.75 16 6 C 0.15 1.38 10.96 -17.20 -0.19 1.19 16 7 C -0.18 -1.77 5.12 -104.36 -0.53 -2.30 16 8 C 0.09 0.76 4.28 -4.98 -0.02 0.74 16 9 N -0.50 -5.28 5.26 -231.59 -1.22 -6.50 16 10 C 0.04 0.34 6.18 -1.99 -0.01 0.33 16 11 C -0.10 -1.01 6.32 -25.73 -0.16 -1.18 16 12 C -0.10 -1.21 0.83 -155.25 -0.13 -1.34 16 13 C -0.12 -1.21 6.12 -25.43 -0.16 -1.37 16 14 C 0.10 1.28 7.37 -2.84 -0.02 1.26 16 15 N -0.61 -10.77 2.94 -172.42 -0.51 -11.28 16 16 C 0.13 2.69 5.89 -4.04 -0.02 2.66 16 17 C 0.01 0.34 5.30 -27.89 -0.15 0.19 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 19 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.53 9.39 6.49 -11.22 -0.07 9.31 16 27 O -0.52 -11.42 17.46 5.55 0.10 -11.32 16 28 C 0.06 0.67 5.42 -2.58 -0.01 0.65 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.80 6.24 -51.93 -0.32 0.47 16 32 H 0.19 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.16 1.01 8.05 -52.49 -0.42 0.59 16 34 H 0.05 0.33 7.60 -51.93 -0.39 -0.06 16 35 H 0.09 0.74 6.72 -51.93 -0.35 0.39 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.34 7.73 -51.92 -0.40 -0.06 16 38 H 0.08 0.95 7.76 -51.93 -0.40 0.54 16 39 H 0.08 0.61 7.32 -51.93 -0.38 0.23 16 40 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 41 H 0.09 0.60 7.43 -51.93 -0.39 0.21 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.56 7.93 -51.93 -0.41 1.14 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.05 0.48 7.70 -51.92 -0.40 0.08 16 50 H 0.09 1.26 7.84 -51.93 -0.41 0.85 16 LS Contribution 403.92 15.07 6.09 6.09 Total: -1.00 -35.10 403.92 -11.36 -46.46 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.04 Total: -1.49 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -3.23 Total: -0.38 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -1.25 Total: -55.95 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.10 Total: -11.32 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.10 -11.36 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274129577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.811 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds