Wall clock time and date at job start Wed Apr 1 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38594 * 120.80169 * 2 1 4 4 N 1.32332 * 119.10601 * 180.02562 * 3 2 1 5 5 C 1.31787 * 120.82008 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.12623 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.47524 * 89.99588 * 6 5 4 8 8 C 1.48632 * 110.99973 * 287.44980 * 7 6 5 9 9 C 1.55161 * 103.35770 * 200.85151 * 8 7 6 10 10 C 1.53594 * 102.66280 * 36.58691 * 9 8 7 11 11 C 1.53842 * 110.85094 * 217.70532 * 10 9 8 12 12 C 1.54707 * 101.41327 * 215.39714 * 11 10 9 13 13 N 1.46880 * 105.59339 * 24.53909 * 12 11 10 14 14 C 1.46499 * 124.36991 * 163.13892 * 13 12 11 15 15 C 1.53006 * 109.47230 * 89.99795 * 14 13 12 16 16 C 1.50702 * 109.47048 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99543 * 180.02562 * 16 15 14 19 19 N 1.31505 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99775 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47234 * 89.99651 * 20 18 16 22 22 H 1.48497 * 109.47222 * 209.99747 * 20 18 16 23 23 H 1.48504 * 109.46969 * 329.99857 * 20 18 16 24 24 C 1.34743 * 111.26010 * 343.14061 * 13 12 11 25 25 O 1.21280 * 125.13597 * 181.00962 * 24 13 12 26 26 C 1.48186 * 111.00187 * 170.00010 * 7 6 5 27 27 N 1.31803 * 121.75139 * 0.26683 * 5 4 3 28 28 C 1.32325 * 120.81914 * 359.45292 * 27 5 4 29 29 H 1.08999 * 109.47536 * 90.00295 * 1 2 3 30 30 H 1.09002 * 109.47040 * 210.00223 * 1 2 3 31 31 H 1.09002 * 109.47465 * 330.00075 * 1 2 3 32 32 H 1.08003 * 120.44707 * 0.04392 * 3 2 1 33 33 H 1.08998 * 109.46815 * 329.99201 * 6 5 4 34 34 H 1.09005 * 109.46908 * 209.99747 * 6 5 4 35 35 H 1.09003 * 110.63959 * 319.32413 * 8 7 6 36 36 H 1.09007 * 110.63833 * 82.22099 * 8 7 6 37 37 H 1.09004 * 110.76976 * 278.28878 * 9 8 7 38 38 H 1.09001 * 110.77176 * 154.88232 * 9 8 7 39 39 H 1.08999 * 111.08821 * 97.36392 * 11 10 9 40 40 H 1.08999 * 111.04308 * 333.40731 * 11 10 9 41 41 H 1.09002 * 110.23692 * 265.48344 * 12 11 10 42 42 H 1.09004 * 110.23665 * 143.59615 * 12 11 10 43 43 H 1.08999 * 109.47659 * 210.00021 * 14 13 12 44 44 H 1.09005 * 109.47272 * 330.00238 * 14 13 12 45 45 H 1.09003 * 109.46791 * 300.00177 * 15 14 13 46 46 H 1.08996 * 109.46701 * 60.00031 * 15 14 13 47 47 H 0.97000 * 120.00315 * 180.02562 * 19 18 16 48 48 H 1.08997 * 110.01559 * 26.34704 * 26 7 6 49 49 H 1.08996 * 110.01947 * 264.94727 * 26 7 6 50 50 H 1.08002 * 120.44994 * 180.29270 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1904 0.0000 4 7 3.5394 1.1513 -0.0005 5 6 4.1808 0.0000 -0.0015 6 6 5.6878 0.0000 -0.0015 7 7 6.1775 -0.0012 1.3834 8 6 5.9629 1.3221 2.0254 9 6 6.9764 1.3192 3.2002 10 6 8.1812 0.5764 2.6037 11 6 8.8411 -0.3309 3.6564 12 6 10.3344 -0.2124 3.2698 13 7 10.4600 1.0722 2.5687 14 6 11.7291 1.7650 2.3329 15 6 12.3194 1.3077 0.9975 16 6 13.6246 2.0210 0.7546 17 1 13.9961 2.7292 1.4804 18 6 14.3443 1.7692 -0.3941 19 7 13.8922 0.9064 -1.2776 20 14 15.9625 2.6527 -0.6948 21 1 17.0759 1.8560 -0.1196 22 1 16.1735 2.8155 -2.1557 23 1 15.9244 3.9890 -0.0482 24 6 9.2574 1.5311 2.1705 25 8 9.0715 2.5596 1.5552 26 6 7.6391 -0.2415 1.4297 27 7 3.5393 -1.1513 -0.0073 28 6 2.2167 -1.1905 -0.0014 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6971 2.1373 0.0007 33 1 6.0511 0.8904 -0.5147 34 1 6.0511 -0.8896 -0.5161 35 1 6.1862 2.1287 1.3271 36 1 4.9413 1.4081 2.3960 37 1 6.5739 0.7781 4.0566 38 1 7.2489 2.3373 3.4782 39 1 8.4931 -1.3595 3.5612 40 1 8.6669 0.0474 4.6636 41 1 10.6191 -1.0317 2.6095 42 1 10.9570 -0.2162 4.1645 43 1 11.5559 2.8408 2.3042 44 1 12.4261 1.5306 3.1375 45 1 12.4926 0.2319 1.0262 46 1 11.6225 1.5422 0.1929 47 1 14.3987 0.7290 -2.0856 48 1 8.1012 0.0893 0.4996 49 1 7.8381 -1.3011 1.5896 50 1 1.6971 -2.1374 -0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274441986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:52 Heat of formation + Delta-G solvation = 19.478728 kcal Electronic energy + Delta-G solvation = -29963.116135 eV Core-core repulsion = 25990.144157 eV Total energy + Delta-G solvation = -3972.971978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40052 -40.82911 -37.93093 -35.99735 -34.77008 -33.94447 -33.72191 -32.51937 -30.84569 -29.02677 -28.72942 -27.68501 -25.64138 -24.99109 -24.87809 -23.20118 -22.36140 -21.92226 -21.06214 -20.23591 -18.60485 -17.97770 -17.17704 -16.61772 -16.24915 -15.96742 -15.48771 -15.03920 -14.94163 -14.73285 -14.52282 -14.33244 -14.24785 -13.92891 -13.61257 -13.51345 -13.39156 -13.01288 -12.88890 -12.73910 -12.60898 -12.34783 -12.27706 -12.09516 -11.79044 -11.43606 -11.37954 -11.22485 -11.07590 -11.05727 -10.94816 -10.79411 -10.69589 -10.65311 -9.98272 -9.84913 -9.53237 -9.41706 -9.33229 -9.07863 -8.55114 -8.37287 -8.00571 -6.02201 -4.05676 0.57408 0.85369 2.97457 3.31338 3.31881 3.37589 3.41105 3.56348 3.66694 3.91040 4.11288 4.28254 4.34934 4.43579 4.45643 4.46367 4.49678 4.56680 4.88092 4.98908 5.08318 5.10937 5.13730 5.25318 5.32106 5.33950 5.38569 5.40162 5.53355 5.56310 5.62611 5.64713 5.73468 5.79633 5.84764 5.92911 5.95394 6.02866 6.08971 6.13739 6.15056 6.46353 6.67071 6.75789 6.81095 6.82407 7.01675 7.51315 7.66821 7.85362 7.89533 7.97496 8.33776 8.67943 9.01022 9.58332 11.09204 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.002161 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.516020 B =12956.600864 C =13704.602119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.201 4.201 3 C 0.147 3.853 4 N -0.508 5.508 5 C 0.329 3.671 6 C 0.110 3.890 7 N -0.506 5.506 8 C 0.041 3.959 9 C -0.098 4.098 10 C -0.106 4.106 11 C -0.118 4.118 12 C 0.100 3.900 13 N -0.610 5.610 14 C 0.128 3.872 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.524 3.476 25 O -0.528 6.528 26 C 0.064 3.936 27 N -0.498 5.498 28 C 0.146 3.854 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.166 0.834 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.017 0.983 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.057 0.943 49 H 0.094 0.906 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.329 -6.021 8.026 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.205 4.205 3 C -0.020 4.020 4 N -0.221 5.221 5 C 0.062 3.938 6 C -0.020 4.020 7 N -0.231 5.231 8 C -0.087 4.087 9 C -0.136 4.136 10 C -0.110 4.110 11 C -0.155 4.155 12 C -0.024 4.024 13 N -0.343 5.343 14 C 0.008 3.992 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.309 3.691 25 O -0.404 6.404 26 C -0.064 4.064 27 N -0.211 5.211 28 C -0.020 4.020 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.036 0.964 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.112 0.888 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.533 -5.925 7.767 27.338 hybrid contribution 0.427 0.955 -0.787 1.309 sum -25.107 -4.969 6.980 26.529 Atomic orbital electron populations 1.20635 0.89234 1.03451 1.02808 1.21723 0.99079 0.95802 1.03888 1.23157 0.89556 0.98193 0.91074 1.68281 1.09915 1.30675 1.13243 1.22920 0.97303 0.83282 0.90339 1.20953 0.86030 1.03598 0.91427 1.64881 1.13952 1.29750 1.14520 1.23292 0.99203 0.90160 0.96001 1.22315 0.92996 1.00535 0.97764 1.21566 0.95855 0.96453 0.97166 1.22702 0.94195 1.00386 0.98256 1.22117 0.96450 0.86744 0.97087 1.48637 1.07681 1.21878 1.56095 1.21813 0.80947 0.96090 1.00379 1.19403 0.95566 0.96784 0.90828 1.21087 1.05303 1.24548 1.05168 0.92485 1.25006 0.98084 0.95249 0.95977 1.69967 1.38727 1.34278 1.10159 0.86547 0.83687 0.80110 0.77384 1.20623 1.21185 1.19794 1.20196 0.84163 0.85658 0.79036 1.90699 1.84166 1.25100 1.40440 1.22646 0.86683 1.00199 0.96882 1.68254 1.09669 1.30532 1.12690 1.23178 0.89640 0.98145 0.91065 0.90687 0.90969 0.90982 0.81704 0.91226 0.87991 0.92151 0.90589 0.90123 0.90385 0.88934 0.89985 0.90981 0.90577 0.91204 0.91611 0.96440 0.96159 0.92930 0.92458 0.88809 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 10.06 36.00 0.36 -0.03 16 2 C -0.20 -1.47 5.91 -104.36 -0.62 -2.09 16 3 C 0.15 1.30 11.01 -17.20 -0.19 1.11 16 4 N -0.51 -6.13 10.13 -10.72 -0.11 -6.24 16 5 C 0.33 4.16 6.80 -157.19 -1.07 3.09 16 6 C 0.11 1.42 5.15 -4.98 -0.03 1.39 16 7 N -0.51 -6.61 5.25 -232.05 -1.22 -7.83 16 8 C 0.04 0.54 5.98 -1.72 -0.01 0.53 16 9 C -0.10 -1.22 6.02 -25.28 -0.15 -1.37 16 10 C -0.11 -1.46 0.77 -155.13 -0.12 -1.58 16 11 C -0.12 -1.27 6.12 -25.39 -0.16 -1.42 16 12 C 0.10 1.34 7.36 -2.94 -0.02 1.31 16 13 N -0.61 -11.15 2.94 -172.52 -0.51 -11.66 16 14 C 0.13 2.73 5.88 -4.04 -0.02 2.71 16 15 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.20 13.28 55.43 0.74 -26.46 16 20 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.52 9.80 6.48 -11.22 -0.07 9.73 16 25 O -0.53 -12.07 17.45 5.56 0.10 -11.97 16 26 C 0.06 0.86 6.03 -3.11 -0.02 0.84 16 27 N -0.50 -5.93 10.33 -10.72 -0.11 -6.04 16 28 C 0.15 1.27 11.01 -17.21 -0.19 1.08 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.21 8.10 -51.93 -0.42 -0.22 16 31 H 0.07 0.21 8.10 -51.93 -0.42 -0.21 16 32 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.07 0.96 7.83 -51.93 -0.41 0.56 16 34 H 0.10 1.24 8.08 -51.93 -0.42 0.82 16 35 H 0.06 0.92 7.80 -51.93 -0.41 0.52 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.84 7.84 -51.93 -0.41 0.44 16 38 H 0.08 1.04 7.81 -51.93 -0.41 0.64 16 39 H 0.09 0.82 7.44 -51.93 -0.39 0.43 16 40 H 0.08 0.77 7.88 -51.93 -0.41 0.36 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.58 7.95 -51.93 -0.41 1.17 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.06 0.90 7.38 -51.93 -0.38 0.52 16 49 H 0.09 1.11 7.31 -51.93 -0.38 0.73 16 50 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 407.39 15.07 6.14 6.14 Total: -1.00 -35.75 407.39 -11.06 -46.80 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.20 Total: -1.44 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.86 Total: 1.84 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -1.21 Total: -58.23 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.10 Total: -11.97 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.75 -11.06 -46.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274441986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.281 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds