Wall clock time and date at job start Wed Apr 1 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38594 * 120.80169 * 2 1 4 4 N 1.32332 * 119.10601 * 180.02562 * 3 2 1 5 5 C 1.31787 * 120.82008 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.12623 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.47524 * 89.99588 * 6 5 4 8 8 C 1.48632 * 110.99973 * 287.44980 * 7 6 5 9 9 C 1.55161 * 103.35770 * 200.85151 * 8 7 6 10 10 C 1.53594 * 102.66280 * 36.58691 * 9 8 7 11 11 C 1.53842 * 110.85094 * 217.70532 * 10 9 8 12 12 C 1.54707 * 101.41327 * 215.39714 * 11 10 9 13 13 N 1.46880 * 105.59339 * 24.53909 * 12 11 10 14 14 C 1.46499 * 124.36991 * 163.13892 * 13 12 11 15 15 C 1.53006 * 109.47230 * 89.99795 * 14 13 12 16 16 C 1.50702 * 109.47048 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99543 * 180.02562 * 16 15 14 19 19 N 1.31505 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99775 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47234 * 89.99651 * 20 18 16 22 22 H 1.48497 * 109.47222 * 209.99747 * 20 18 16 23 23 H 1.48504 * 109.46969 * 329.99857 * 20 18 16 24 24 C 1.34743 * 111.26010 * 343.14061 * 13 12 11 25 25 O 1.21280 * 125.13597 * 181.00962 * 24 13 12 26 26 C 1.48186 * 111.00187 * 170.00010 * 7 6 5 27 27 N 1.31803 * 121.75139 * 0.26683 * 5 4 3 28 28 C 1.32325 * 120.81914 * 359.45292 * 27 5 4 29 29 H 1.08999 * 109.47536 * 90.00295 * 1 2 3 30 30 H 1.09002 * 109.47040 * 210.00223 * 1 2 3 31 31 H 1.09002 * 109.47465 * 330.00075 * 1 2 3 32 32 H 1.08003 * 120.44707 * 0.04392 * 3 2 1 33 33 H 1.08998 * 109.46815 * 329.99201 * 6 5 4 34 34 H 1.09005 * 109.46908 * 209.99747 * 6 5 4 35 35 H 1.09003 * 110.63959 * 319.32413 * 8 7 6 36 36 H 1.09007 * 110.63833 * 82.22099 * 8 7 6 37 37 H 1.09004 * 110.76976 * 278.28878 * 9 8 7 38 38 H 1.09001 * 110.77176 * 154.88232 * 9 8 7 39 39 H 1.08999 * 111.08821 * 97.36392 * 11 10 9 40 40 H 1.08999 * 111.04308 * 333.40731 * 11 10 9 41 41 H 1.09002 * 110.23692 * 265.48344 * 12 11 10 42 42 H 1.09004 * 110.23665 * 143.59615 * 12 11 10 43 43 H 1.08999 * 109.47659 * 210.00021 * 14 13 12 44 44 H 1.09005 * 109.47272 * 330.00238 * 14 13 12 45 45 H 1.09003 * 109.46791 * 300.00177 * 15 14 13 46 46 H 1.08996 * 109.46701 * 60.00031 * 15 14 13 47 47 H 0.97000 * 120.00315 * 180.02562 * 19 18 16 48 48 H 1.08997 * 110.01559 * 26.34704 * 26 7 6 49 49 H 1.08996 * 110.01947 * 264.94727 * 26 7 6 50 50 H 1.08002 * 120.44994 * 180.29270 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1904 0.0000 4 7 3.5394 1.1513 -0.0005 5 6 4.1808 0.0000 -0.0015 6 6 5.6878 0.0000 -0.0015 7 7 6.1775 -0.0012 1.3834 8 6 5.9629 1.3221 2.0254 9 6 6.9764 1.3192 3.2002 10 6 8.1812 0.5764 2.6037 11 6 8.8411 -0.3309 3.6564 12 6 10.3344 -0.2124 3.2698 13 7 10.4600 1.0722 2.5687 14 6 11.7291 1.7650 2.3329 15 6 12.3194 1.3077 0.9975 16 6 13.6246 2.0210 0.7546 17 1 13.9961 2.7292 1.4804 18 6 14.3443 1.7692 -0.3941 19 7 13.8922 0.9064 -1.2776 20 14 15.9625 2.6527 -0.6948 21 1 17.0759 1.8560 -0.1196 22 1 16.1735 2.8155 -2.1557 23 1 15.9244 3.9890 -0.0482 24 6 9.2574 1.5311 2.1705 25 8 9.0715 2.5596 1.5552 26 6 7.6391 -0.2415 1.4297 27 7 3.5393 -1.1513 -0.0073 28 6 2.2167 -1.1905 -0.0014 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6971 2.1373 0.0007 33 1 6.0511 0.8904 -0.5147 34 1 6.0511 -0.8896 -0.5161 35 1 6.1862 2.1287 1.3271 36 1 4.9413 1.4081 2.3960 37 1 6.5739 0.7781 4.0566 38 1 7.2489 2.3373 3.4782 39 1 8.4931 -1.3595 3.5612 40 1 8.6669 0.0474 4.6636 41 1 10.6191 -1.0317 2.6095 42 1 10.9570 -0.2162 4.1645 43 1 11.5559 2.8408 2.3042 44 1 12.4261 1.5306 3.1375 45 1 12.4926 0.2319 1.0262 46 1 11.6225 1.5422 0.1929 47 1 14.3987 0.7290 -2.0856 48 1 8.1012 0.0893 0.4996 49 1 7.8381 -1.3011 1.5896 50 1 1.6971 -2.1374 -0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274441986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:51 Heat of formation + Delta-G solvation = -5.528360 kcal Electronic energy + Delta-G solvation = -29964.200524 eV Core-core repulsion = 25990.144157 eV Total energy + Delta-G solvation = -3974.056367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.30877 -41.94510 -39.16016 -37.51272 -36.00842 -35.16047 -34.70967 -33.98187 -32.23410 -30.52709 -29.68308 -28.73512 -27.04462 -26.29440 -25.62083 -24.34634 -23.67540 -23.13421 -22.15046 -21.66120 -19.97217 -18.74192 -18.70011 -18.07917 -17.40820 -17.14901 -16.93348 -16.57933 -16.12787 -15.99089 -15.47391 -15.37158 -15.30519 -15.00138 -14.58954 -14.56190 -14.49316 -14.36446 -14.26642 -13.80173 -13.70141 -13.52656 -13.34095 -13.15514 -13.14539 -12.86863 -12.82315 -12.61861 -12.51029 -12.33704 -12.03904 -12.00528 -11.87832 -11.79350 -11.73839 -11.59608 -11.42984 -10.67571 -10.60976 -10.18104 -10.16697 -9.67398 -9.58031 -8.26061 -6.39175 -0.15390 0.15840 1.36912 1.39834 1.49927 1.52216 2.09946 2.38847 2.49592 2.85074 3.06485 3.07351 3.19653 3.30423 3.38360 3.50099 3.69981 3.86758 3.93140 3.96180 4.00574 4.18720 4.19899 4.23784 4.30032 4.36012 4.46635 4.51402 4.55971 4.62286 4.71249 4.74809 4.77862 4.82167 4.83889 4.84965 4.93197 4.97106 5.08326 5.10728 5.16815 5.19578 5.31414 5.43449 5.49247 5.57771 5.60106 5.72412 5.80032 6.03678 6.12656 6.26954 6.76257 7.12167 7.18242 7.30786 8.86145 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.002161 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.516020 B =12956.600864 C =13704.602119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.182 4.182 3 C 0.131 3.869 4 N -0.536 5.536 5 C 0.308 3.692 6 C 0.112 3.888 7 N -0.495 5.495 8 C 0.047 3.953 9 C -0.090 4.090 10 C -0.100 4.100 11 C -0.099 4.099 12 C 0.090 3.910 13 N -0.617 5.617 14 C 0.141 3.859 15 C 0.024 3.976 16 C -0.545 4.545 17 H 0.067 0.933 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.509 3.491 25 O -0.584 6.584 26 C 0.065 3.935 27 N -0.520 5.520 28 C 0.134 3.866 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.192 0.808 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.002 0.998 46 H -0.031 1.031 47 H 0.264 0.736 48 H 0.020 0.980 49 H 0.120 0.880 50 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.800 -7.397 10.471 30.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.186 4.186 3 C -0.034 4.034 4 N -0.250 5.250 5 C 0.040 3.960 6 C -0.018 4.018 7 N -0.219 5.219 8 C -0.081 4.081 9 C -0.128 4.128 10 C -0.104 4.104 11 C -0.136 4.136 12 C -0.032 4.032 13 N -0.348 5.348 14 C 0.020 3.980 15 C -0.014 4.014 16 C -0.583 4.583 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.796 3.204 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.188 1.188 24 C 0.297 3.703 25 O -0.465 6.465 26 C -0.063 4.063 27 N -0.233 5.233 28 C -0.031 4.031 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.208 0.792 33 H 0.063 0.937 34 H 0.121 0.879 35 H 0.045 0.955 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.020 0.980 46 H -0.012 1.012 47 H 0.073 0.927 48 H 0.039 0.961 49 H 0.138 0.862 50 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -27.026 -7.336 10.251 29.821 hybrid contribution 0.756 1.376 -1.631 2.264 sum -26.270 -5.960 8.619 28.283 Atomic orbital electron populations 1.20742 0.86205 1.04915 1.03938 1.22105 1.00987 0.94614 1.00899 1.23712 0.88690 1.00150 0.90885 1.68227 1.11786 1.30790 1.14205 1.22603 0.96802 0.84014 0.92601 1.20853 0.87339 1.02455 0.91149 1.64968 1.13183 1.29233 1.14552 1.23190 0.99881 0.89267 0.95743 1.22349 0.91914 1.00282 0.98259 1.21555 0.94771 0.95932 0.98151 1.22791 0.91176 1.01446 0.98183 1.22490 0.99224 0.83926 0.97534 1.48759 1.06404 1.23483 1.56186 1.21384 0.82961 0.95305 0.98375 1.19210 0.94383 0.95662 0.92136 1.21550 1.06081 1.24916 1.05793 0.91457 1.26054 1.02342 0.95974 0.95596 1.70116 1.40548 1.35846 1.10760 0.85345 0.78694 0.79119 0.77268 1.18909 1.20995 1.18788 1.21180 0.85593 0.85623 0.77915 1.90652 1.85196 1.27845 1.42768 1.22717 0.86899 1.01390 0.95330 1.68198 1.11465 1.30186 1.13475 1.23798 0.88740 1.00090 0.90495 0.89476 0.89366 0.89704 0.79167 0.93654 0.87862 0.95506 0.89789 0.86552 0.91577 0.85728 0.87214 0.91223 0.87872 0.93109 0.88754 0.98005 1.01233 0.92692 0.96099 0.86241 0.78560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 10.06 71.23 0.72 0.30 16 2 C -0.18 -2.30 5.91 -19.69 -0.12 -2.42 16 3 C 0.13 2.21 11.01 84.70 0.93 3.14 16 4 N -0.54 -13.38 10.13 -187.84 -1.90 -15.29 16 5 C 0.31 8.08 6.80 138.75 0.94 9.02 16 6 C 0.11 3.14 5.15 85.56 0.44 3.58 16 7 N -0.50 -13.25 5.25 -888.07 -4.66 -17.91 16 8 C 0.05 1.28 5.98 86.71 0.52 1.80 16 9 C -0.09 -2.16 6.02 31.54 0.19 -1.97 16 10 C -0.10 -2.71 0.77 -52.59 -0.04 -2.75 16 11 C -0.10 -1.79 6.12 31.46 0.19 -1.60 16 12 C 0.09 2.23 7.36 86.89 0.64 2.87 16 13 N -0.62 -22.92 2.94 -818.13 -2.41 -25.33 16 14 C 0.14 6.23 5.88 86.38 0.51 6.74 16 15 C 0.02 1.35 5.30 29.85 0.16 1.50 16 16 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 17 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 18 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 19 N -0.93 -58.74 13.28 21.45 0.28 -58.46 16 20 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.51 19.94 6.48 87.52 0.57 20.51 16 25 O -0.58 -28.98 17.45 -3.03 -0.05 -29.03 16 26 C 0.06 1.79 6.03 86.06 0.52 2.31 16 27 N -0.52 -12.23 10.33 -187.84 -1.94 -14.18 16 28 C 0.13 2.10 11.01 84.71 0.93 3.04 16 29 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.09 0.15 8.10 -2.39 -0.02 0.13 16 31 H 0.08 0.20 8.10 -2.39 -0.02 0.18 16 32 H 0.19 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.05 1.45 7.83 -2.39 -0.02 1.43 16 34 H 0.10 2.74 8.08 -2.38 -0.02 2.72 16 35 H 0.03 0.90 7.80 -2.39 -0.02 0.88 16 36 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.12 2.01 7.84 -2.38 -0.02 1.99 16 38 H 0.07 1.77 7.81 -2.39 -0.02 1.76 16 39 H 0.12 1.58 7.44 -2.39 -0.02 1.56 16 40 H 0.11 1.49 7.88 -2.39 -0.02 1.47 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 2.41 7.95 -2.39 -0.02 2.39 16 44 H 0.09 3.59 8.14 -2.38 -0.02 3.58 16 45 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 46 H -0.03 -2.00 8.14 -2.39 -0.02 -2.02 16 47 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 48 H 0.02 0.72 7.38 -2.39 -0.02 0.70 16 49 H 0.12 2.67 7.31 -2.39 -0.02 2.65 16 50 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -84.90 407.39 0.06 -84.83 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.92 Total: 13.31 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 7.80 Total: 14.70 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -10.63 Total: -131.17 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.05 Total: -29.03 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -84.90 0.06 -84.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274441986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.304 kcal (2) G-P(sol) polarization free energy of solvation -84.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds