Wall clock time and date at job start Wed Apr 1 2020 04:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38590 * 120.80131 * 2 1 4 4 N 1.32332 * 119.10388 * 179.97438 * 3 2 1 5 5 C 1.31800 * 120.81856 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.12105 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47251 * 90.00474 * 6 5 4 8 8 C 1.48771 * 110.99694 * 285.35340 * 7 6 5 9 9 C 1.54466 * 104.76554 * 202.30353 * 8 7 6 10 10 C 1.54494 * 105.04265 * 23.55816 * 9 8 7 11 11 C 1.47401 * 111.00045 * 169.99941 * 7 6 5 12 12 C 1.53580 * 111.07295 * 278.32844 * 11 7 6 13 13 C 1.54716 * 101.50793 * 145.00057 * 12 11 7 14 14 N 1.46889 * 105.52022 * 335.50905 * 13 12 11 15 15 C 1.46493 * 124.37663 * 196.78029 * 14 13 12 16 16 C 1.52996 * 109.47400 * 89.99376 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.34763 * 111.25040 * 17.04173 * 14 13 12 26 26 O 1.21280 * 125.13485 * 178.72113 * 25 14 13 27 27 N 1.31790 * 121.75425 * 0.28192 * 5 4 3 28 28 C 1.32337 * 120.81439 * 359.44087 * 27 5 4 29 29 H 1.08993 * 109.47549 * 89.99324 * 1 2 3 30 30 H 1.09001 * 109.46886 * 210.00179 * 1 2 3 31 31 H 1.09006 * 109.46743 * 329.99696 * 1 2 3 32 32 H 1.07995 * 120.45038 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.47626 * 329.99902 * 6 5 4 34 34 H 1.09001 * 109.47113 * 210.00687 * 6 5 4 35 35 H 1.08998 * 110.37551 * 83.48591 * 8 7 6 36 36 H 1.08996 * 110.47608 * 321.17492 * 8 7 6 37 37 H 1.08999 * 110.32490 * 264.66218 * 9 8 7 38 38 H 1.09003 * 110.41142 * 142.49363 * 9 8 7 39 39 H 1.09010 * 110.37959 * 240.43672 * 10 9 8 40 40 H 1.09002 * 110.38124 * 118.07704 * 10 9 8 41 41 H 1.08997 * 111.01818 * 26.95001 * 12 11 7 42 42 H 1.08999 * 111.02039 * 263.05268 * 12 11 7 43 43 H 1.09000 * 110.24172 * 216.49478 * 13 12 11 44 44 H 1.09005 * 110.23701 * 94.51457 * 13 12 11 45 45 H 1.09004 * 109.46794 * 329.99475 * 15 14 13 46 46 H 1.09000 * 109.47559 * 209.99952 * 15 14 13 47 47 H 1.09004 * 109.47066 * 60.00265 * 16 15 14 48 48 H 1.08994 * 109.47405 * 300.00096 * 16 15 14 49 49 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 50 50 H 1.08004 * 120.44513 * 180.29926 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1904 0.0000 4 7 3.5394 1.1512 0.0005 5 6 4.1808 -0.0002 0.0015 6 6 5.6878 -0.0002 0.0027 7 7 6.1764 0.0003 1.3880 8 6 6.0069 1.3399 2.0125 9 6 7.0304 1.3674 3.1692 10 6 8.1072 0.3315 2.7764 11 6 7.6302 -0.2386 1.4355 12 6 7.9472 -1.7375 1.3286 13 6 9.2645 -1.7173 0.5174 14 7 9.2442 -0.4552 -0.2338 15 6 10.0994 -0.1654 -1.3874 16 6 9.3916 -0.6055 -2.6704 17 6 10.2716 -0.3079 -3.8570 18 1 11.2392 0.1490 -3.7107 19 6 9.8441 -0.6247 -5.1291 20 7 8.6660 -1.1814 -5.3072 21 14 10.9382 -0.2628 -6.5992 22 1 12.2030 0.3604 -6.1335 23 1 11.2440 -1.5292 -7.3122 24 1 10.2375 0.6673 -7.5208 25 6 8.3412 0.4038 0.2788 26 8 8.1327 1.5253 -0.1331 27 7 3.5394 -1.1514 -0.0034 28 6 2.2166 -1.1905 0.0014 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6973 2.1373 0.0004 33 1 6.0516 0.8896 -0.5113 34 1 6.0515 -0.8903 -0.5106 35 1 4.9941 1.4530 2.3992 36 1 6.2275 2.1273 1.2918 37 1 6.5517 1.0797 4.1052 38 1 7.4742 2.3588 3.2606 39 1 8.1654 -0.4583 3.5255 40 1 9.0761 0.8170 2.6594 41 1 7.1626 -2.2654 0.7866 42 1 8.1020 -2.1757 2.3145 43 1 9.2981 -2.5638 -0.1684 44 1 10.1219 -1.7419 1.1901 45 1 11.0401 -0.7069 -1.2874 46 1 10.2995 0.9051 -1.4316 47 1 8.4508 -0.0640 -2.7704 48 1 9.1916 -1.6760 -2.6262 49 1 8.3651 -1.4039 -6.2022 50 1 1.6971 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274442329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:58 Heat of formation + Delta-G solvation = 22.831985 kcal Electronic energy + Delta-G solvation = -31150.490614 eV Core-core repulsion = 27177.664044 eV Total energy + Delta-G solvation = -3972.826570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40301 -40.84187 -37.48684 -36.07985 -34.50822 -33.73256 -33.56005 -32.16941 -31.79750 -29.08794 -28.29753 -27.62913 -25.33471 -24.99626 -24.69781 -23.40322 -22.12245 -21.82182 -20.90957 -20.27259 -18.61084 -17.76692 -17.00168 -16.75610 -16.20980 -15.71903 -15.27054 -15.15607 -14.87703 -14.70878 -14.49526 -14.42056 -14.15428 -13.74478 -13.63371 -13.29300 -13.17821 -12.74362 -12.70554 -12.68374 -12.47862 -12.37669 -12.20108 -12.03216 -11.67279 -11.33193 -11.26150 -11.14716 -10.96582 -10.85240 -10.82975 -10.74136 -10.69458 -10.53732 -10.03192 -9.87957 -9.77778 -9.30925 -9.20651 -9.19762 -8.38244 -8.26979 -7.98408 -6.02468 -4.06012 0.78757 1.07389 2.89951 3.30461 3.37513 3.41260 3.49738 3.53627 3.85461 4.12605 4.19134 4.45100 4.46863 4.50148 4.53396 4.62463 4.64948 4.69430 4.92595 5.14551 5.15404 5.23717 5.25571 5.26263 5.33772 5.34856 5.52459 5.58158 5.61340 5.72690 5.76984 5.81857 5.83161 5.88340 5.94257 5.96311 6.01126 6.08942 6.14759 6.20032 6.36726 6.46110 6.79069 6.80659 6.86276 6.96796 7.00420 7.48248 7.66057 7.83472 7.96754 8.12294 8.32913 8.62112 9.00680 9.58148 11.08804 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009243 B = 0.003512 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.452057 B = 7969.689186 C =10053.142251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.203 4.203 3 C 0.146 3.854 4 N -0.507 5.507 5 C 0.336 3.664 6 C 0.097 3.903 7 N -0.472 5.472 8 C 0.033 3.967 9 C -0.121 4.121 10 C -0.098 4.098 11 C 0.058 3.942 12 C -0.114 4.114 13 C 0.098 3.902 14 N -0.608 5.608 15 C 0.127 3.873 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.499 3.501 26 O -0.526 6.526 27 N -0.497 5.497 28 C 0.146 3.854 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.165 0.835 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.260 0.740 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 -0.573 18.654 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.207 4.207 3 C -0.021 4.021 4 N -0.220 5.220 5 C 0.068 3.932 6 C -0.032 4.032 7 N -0.196 5.196 8 C -0.095 4.095 9 C -0.159 4.159 10 C -0.137 4.137 11 C -0.036 4.036 12 C -0.152 4.152 13 C -0.026 4.026 14 N -0.341 5.341 15 C 0.006 3.994 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.284 3.716 26 O -0.403 6.403 27 N -0.210 5.210 28 C -0.020 4.020 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.182 0.818 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.771 -0.451 18.484 21.918 hybrid contribution -0.100 0.631 -1.569 1.694 sum -11.871 0.179 16.915 20.666 Atomic orbital electron populations 1.20619 0.89323 1.03247 1.02783 1.21699 0.98987 0.95841 1.04215 1.23134 0.89590 0.98117 0.91240 1.68279 1.09830 1.30701 1.13180 1.22832 0.97109 0.83241 0.89997 1.21128 0.86145 1.04947 0.91003 1.65367 1.10599 1.28177 1.15412 1.23228 0.99279 0.90559 0.96437 1.22327 0.95988 0.99193 0.98366 1.22087 0.98865 0.98849 0.93852 1.22129 0.88857 0.97061 0.95502 1.22562 0.97279 0.93785 1.01595 1.22169 0.97535 0.87836 0.95014 1.48684 1.38878 1.15559 1.30939 1.21822 0.92208 1.00854 0.84471 1.19391 0.96348 0.96794 0.89942 1.21115 1.03061 1.40704 0.91180 0.92445 1.25002 0.95131 0.95060 0.99066 1.69988 1.18777 1.42201 1.22063 0.86506 0.80696 0.77970 0.82658 1.19655 1.20974 1.20961 1.20994 0.80744 0.85525 0.84386 1.90693 1.66097 1.18491 1.64990 1.68266 1.09641 1.30562 1.12573 1.23172 0.89667 0.98101 0.91084 0.90714 0.91064 0.91112 0.81793 0.89424 0.88099 0.90710 0.91404 0.91132 0.91093 0.89886 0.90928 0.89084 0.88972 0.89888 0.91372 0.91558 0.91177 0.96266 0.96415 0.93002 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.06 36.01 0.36 -0.24 16 2 C -0.20 -2.02 5.91 -104.36 -0.62 -2.63 16 3 C 0.15 1.68 11.01 -17.21 -0.19 1.49 16 4 N -0.51 -7.75 10.20 -10.73 -0.11 -7.86 16 5 C 0.34 5.49 6.85 -157.20 -1.08 4.42 16 6 C 0.10 1.70 4.24 -4.98 -0.02 1.68 16 7 N -0.47 -7.12 5.01 -218.56 -1.10 -8.22 16 8 C 0.03 0.46 5.67 -2.02 -0.01 0.45 16 9 C -0.12 -1.39 7.01 -25.18 -0.18 -1.57 16 10 C -0.10 -1.15 6.17 -25.78 -0.16 -1.31 16 11 C 0.06 0.84 0.56 -132.25 -0.07 0.77 16 12 C -0.11 -1.41 6.29 -25.53 -0.16 -1.57 16 13 C 0.10 1.34 7.37 -2.93 -0.02 1.32 16 14 N -0.61 -11.10 2.95 -172.52 -0.51 -11.61 16 15 C 0.13 2.70 5.89 -4.05 -0.02 2.67 16 16 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 17 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 21 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.50 9.31 5.48 -11.23 -0.06 9.25 16 26 O -0.53 -11.75 14.82 5.56 0.08 -11.67 16 27 N -0.50 -7.59 10.33 -10.72 -0.11 -7.70 16 28 C 0.15 1.69 11.01 -17.20 -0.19 1.50 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.09 1.79 5.93 -51.93 -0.31 1.49 16 34 H 0.10 1.88 7.28 -51.93 -0.38 1.50 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.14 6.80 -51.93 -0.35 0.79 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.78 7.45 -51.92 -0.39 0.39 16 40 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 41 H 0.09 1.21 7.39 -51.93 -0.38 0.83 16 42 H 0.09 0.86 7.45 -51.93 -0.39 0.48 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 400.57 15.07 6.04 6.04 Total: -1.00 -35.34 400.57 -11.02 -46.36 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.05 Total: 1.42 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.98 Total: 2.84 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -1.09 Total: -61.87 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.34 -11.02 -46.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274442329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.189 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds