Wall clock time and date at job start Wed Apr 1 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38590 * 120.80131 * 2 1 4 4 N 1.32332 * 119.10388 * 179.97438 * 3 2 1 5 5 C 1.31800 * 120.81856 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.12105 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47251 * 90.00474 * 6 5 4 8 8 C 1.48771 * 110.99694 * 285.35340 * 7 6 5 9 9 C 1.54466 * 104.76554 * 202.30353 * 8 7 6 10 10 C 1.54494 * 105.04265 * 23.55816 * 9 8 7 11 11 C 1.47401 * 111.00045 * 169.99941 * 7 6 5 12 12 C 1.53580 * 111.07295 * 278.32844 * 11 7 6 13 13 C 1.54716 * 101.50793 * 145.00057 * 12 11 7 14 14 N 1.46889 * 105.52022 * 335.50905 * 13 12 11 15 15 C 1.46493 * 124.37663 * 196.78029 * 14 13 12 16 16 C 1.52996 * 109.47400 * 89.99376 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.34763 * 111.25040 * 17.04173 * 14 13 12 26 26 O 1.21280 * 125.13485 * 178.72113 * 25 14 13 27 27 N 1.31790 * 121.75425 * 0.28192 * 5 4 3 28 28 C 1.32337 * 120.81439 * 359.44087 * 27 5 4 29 29 H 1.08993 * 109.47549 * 89.99324 * 1 2 3 30 30 H 1.09001 * 109.46886 * 210.00179 * 1 2 3 31 31 H 1.09006 * 109.46743 * 329.99696 * 1 2 3 32 32 H 1.07995 * 120.45038 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.47626 * 329.99902 * 6 5 4 34 34 H 1.09001 * 109.47113 * 210.00687 * 6 5 4 35 35 H 1.08998 * 110.37551 * 83.48591 * 8 7 6 36 36 H 1.08996 * 110.47608 * 321.17492 * 8 7 6 37 37 H 1.08999 * 110.32490 * 264.66218 * 9 8 7 38 38 H 1.09003 * 110.41142 * 142.49363 * 9 8 7 39 39 H 1.09010 * 110.37959 * 240.43672 * 10 9 8 40 40 H 1.09002 * 110.38124 * 118.07704 * 10 9 8 41 41 H 1.08997 * 111.01818 * 26.95001 * 12 11 7 42 42 H 1.08999 * 111.02039 * 263.05268 * 12 11 7 43 43 H 1.09000 * 110.24172 * 216.49478 * 13 12 11 44 44 H 1.09005 * 110.23701 * 94.51457 * 13 12 11 45 45 H 1.09004 * 109.46794 * 329.99475 * 15 14 13 46 46 H 1.09000 * 109.47559 * 209.99952 * 15 14 13 47 47 H 1.09004 * 109.47066 * 60.00265 * 16 15 14 48 48 H 1.08994 * 109.47405 * 300.00096 * 16 15 14 49 49 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 50 50 H 1.08004 * 120.44513 * 180.29926 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1904 0.0000 4 7 3.5394 1.1512 0.0005 5 6 4.1808 -0.0002 0.0015 6 6 5.6878 -0.0002 0.0027 7 7 6.1764 0.0003 1.3880 8 6 6.0069 1.3399 2.0125 9 6 7.0304 1.3674 3.1692 10 6 8.1072 0.3315 2.7764 11 6 7.6302 -0.2386 1.4355 12 6 7.9472 -1.7375 1.3286 13 6 9.2645 -1.7173 0.5174 14 7 9.2442 -0.4552 -0.2338 15 6 10.0994 -0.1654 -1.3874 16 6 9.3916 -0.6055 -2.6704 17 6 10.2716 -0.3079 -3.8570 18 1 11.2392 0.1490 -3.7107 19 6 9.8441 -0.6247 -5.1291 20 7 8.6660 -1.1814 -5.3072 21 14 10.9382 -0.2628 -6.5992 22 1 12.2030 0.3604 -6.1335 23 1 11.2440 -1.5292 -7.3122 24 1 10.2375 0.6673 -7.5208 25 6 8.3412 0.4038 0.2788 26 8 8.1327 1.5253 -0.1331 27 7 3.5394 -1.1514 -0.0034 28 6 2.2166 -1.1905 0.0014 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6973 2.1373 0.0004 33 1 6.0516 0.8896 -0.5113 34 1 6.0515 -0.8903 -0.5106 35 1 4.9941 1.4530 2.3992 36 1 6.2275 2.1273 1.2918 37 1 6.5517 1.0797 4.1052 38 1 7.4742 2.3588 3.2606 39 1 8.1654 -0.4583 3.5255 40 1 9.0761 0.8170 2.6594 41 1 7.1626 -2.2654 0.7866 42 1 8.1020 -2.1757 2.3145 43 1 9.2981 -2.5638 -0.1684 44 1 10.1219 -1.7419 1.1901 45 1 11.0401 -0.7069 -1.2874 46 1 10.2995 0.9051 -1.4316 47 1 8.4508 -0.0640 -2.7704 48 1 9.1916 -1.6760 -2.6262 49 1 8.3651 -1.4039 -6.2022 50 1 1.6971 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274442329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:57 Heat of formation + Delta-G solvation = -2.309614 kcal Electronic energy + Delta-G solvation = -31151.580836 eV Core-core repulsion = 27177.664044 eV Total energy + Delta-G solvation = -3973.916792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.60489 -41.94863 -38.81908 -37.59214 -35.74455 -35.30866 -34.76473 -33.54671 -33.15539 -30.82512 -29.21961 -28.81902 -27.03698 -26.22502 -25.65643 -24.68532 -23.55203 -23.12380 -22.04166 -21.70470 -20.02725 -18.81406 -18.73944 -18.02355 -17.71988 -17.09458 -16.79863 -16.42852 -16.21781 -16.06897 -15.69510 -15.42205 -15.35202 -15.10868 -14.70418 -14.54336 -14.44393 -14.28512 -13.96357 -13.82383 -13.66605 -13.61082 -13.40248 -13.16068 -13.03032 -12.89180 -12.77344 -12.54888 -12.41676 -12.23806 -12.05367 -11.95128 -11.91544 -11.86181 -11.77051 -11.57192 -11.42394 -11.11885 -10.65354 -10.23198 -10.19975 -9.68806 -9.49938 -8.27497 -6.40994 -0.20574 0.12529 1.35371 1.37140 1.45024 1.50871 2.08671 2.37753 2.40423 2.75998 2.99755 3.05930 3.15291 3.38059 3.45508 3.54654 3.65651 3.84667 3.90090 3.92891 4.01668 4.14725 4.19984 4.21340 4.27063 4.29020 4.49148 4.51380 4.61441 4.67731 4.71083 4.72944 4.80862 4.83124 4.85346 4.92350 5.01453 5.04945 5.05348 5.13458 5.14451 5.20494 5.27717 5.40505 5.45852 5.53456 5.59695 5.65980 5.78008 5.99919 6.10497 6.22790 6.74584 7.07486 7.13485 7.29222 8.84776 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009243 B = 0.003512 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.452057 B = 7969.689186 C =10053.142251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.181 4.181 3 C 0.130 3.870 4 N -0.536 5.536 5 C 0.309 3.691 6 C 0.113 3.887 7 N -0.460 5.460 8 C 0.035 3.965 9 C -0.115 4.115 10 C -0.093 4.093 11 C 0.057 3.943 12 C -0.103 4.103 13 C 0.093 3.907 14 N -0.617 5.617 15 C 0.142 3.858 16 C 0.027 3.973 17 C -0.544 4.544 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.972 3.028 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.282 1.282 25 C 0.486 3.514 26 O -0.576 6.576 27 N -0.522 5.522 28 C 0.132 3.868 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.196 0.804 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.051 0.949 47 H -0.033 1.033 48 H -0.001 1.001 49 H 0.264 0.736 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.768 -1.747 20.904 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.185 4.185 3 C -0.035 4.035 4 N -0.250 5.250 5 C 0.041 3.959 6 C -0.017 4.017 7 N -0.183 5.183 8 C -0.093 4.093 9 C -0.152 4.152 10 C -0.131 4.131 11 C -0.036 4.036 12 C -0.141 4.141 13 C -0.029 4.029 14 N -0.349 5.349 15 C 0.020 3.980 16 C -0.011 4.011 17 C -0.582 4.582 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.208 1.208 25 C 0.273 3.727 26 O -0.456 6.456 27 N -0.236 5.236 28 C -0.033 4.033 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.213 0.787 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.158 0.842 43 H 0.096 0.904 44 H 0.127 0.873 45 H 0.113 0.887 46 H 0.070 0.930 47 H -0.015 1.015 48 H 0.018 0.982 49 H 0.073 0.927 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.210 -1.655 20.771 24.151 hybrid contribution -0.151 1.007 -2.317 2.531 sum -12.361 -0.648 18.454 22.221 Atomic orbital electron populations 1.20745 0.85752 1.05129 1.03939 1.22147 1.01208 0.94435 1.00682 1.23781 0.88486 1.00361 0.90884 1.68204 1.12014 1.30587 1.14184 1.22427 0.96422 0.84251 0.92819 1.20719 0.87914 1.01303 0.91760 1.65470 1.10838 1.28437 1.13562 1.23179 1.00489 0.89004 0.96607 1.22358 0.95184 0.99669 0.98036 1.22205 0.98457 0.99858 0.92587 1.22340 0.87959 0.98210 0.95121 1.22643 0.95866 0.92032 1.03538 1.22524 0.99909 0.85246 0.95212 1.48793 1.38349 1.17499 1.30230 1.21372 0.93082 0.99918 0.83619 1.19177 0.94400 0.94752 0.92789 1.21571 1.03693 1.40767 0.92195 0.91407 1.26054 0.96626 0.94550 1.02640 1.70142 1.20859 1.43260 1.23040 0.85304 0.78867 0.78167 0.78137 1.18082 1.19716 1.20818 1.21910 0.80440 0.84997 0.85334 1.90653 1.67274 1.20932 1.66730 1.68181 1.11776 1.30159 1.13518 1.23850 0.88555 1.00333 0.90561 0.89612 0.89141 0.89338 0.78706 0.93934 0.90709 0.90439 0.95138 0.88186 0.90853 0.85859 0.91108 0.90718 0.84227 0.90351 0.87337 0.88745 0.93012 1.01493 0.98246 0.92745 0.78334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.06 71.24 0.72 -0.11 16 2 C -0.18 -3.30 5.91 -19.69 -0.12 -3.41 16 3 C 0.13 2.97 11.01 84.70 0.93 3.90 16 4 N -0.54 -17.49 10.20 -187.86 -1.92 -19.40 16 5 C 0.31 10.90 6.85 138.75 0.95 11.85 16 6 C 0.11 4.41 4.24 85.56 0.36 4.77 16 7 N -0.46 -14.52 5.01 -845.38 -4.24 -18.76 16 8 C 0.03 1.04 5.67 86.44 0.49 1.53 16 9 C -0.11 -2.48 7.01 31.60 0.22 -2.26 16 10 C -0.09 -1.96 6.17 31.21 0.19 -1.77 16 11 C 0.06 1.66 0.56 2.83 0.00 1.66 16 12 C -0.10 -2.40 6.29 31.37 0.20 -2.20 16 13 C 0.09 2.45 7.37 86.89 0.64 3.09 16 14 N -0.62 -23.45 2.95 -818.14 -2.41 -25.86 16 15 C 0.14 6.33 5.89 86.38 0.51 6.84 16 16 C 0.03 1.52 5.30 29.85 0.16 1.68 16 17 C -0.54 -32.19 9.11 25.60 0.23 -31.95 16 18 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 19 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 20 N -0.93 -59.40 13.29 21.45 0.28 -59.12 16 21 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 C 0.49 19.34 5.48 87.50 0.48 19.82 16 26 O -0.58 -28.31 14.82 -3.03 -0.04 -28.35 16 27 N -0.52 -16.60 10.33 -187.84 -1.94 -18.54 16 28 C 0.13 2.94 11.01 84.70 0.93 3.88 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.49 8.10 -2.39 -0.02 0.47 16 31 H 0.09 0.50 8.10 -2.38 -0.02 0.48 16 32 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 33 H 0.04 2.01 5.93 -2.38 -0.01 2.00 16 34 H 0.07 3.18 7.28 -2.39 -0.02 3.16 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.03 1.13 6.80 -2.39 -0.02 1.12 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.12 1.67 7.45 -2.38 -0.02 1.65 16 40 H 0.07 1.56 7.84 -2.39 -0.02 1.54 16 41 H 0.07 2.01 7.39 -2.39 -0.02 1.99 16 42 H 0.14 1.97 7.45 -2.39 -0.02 1.95 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.09 3.66 8.14 -2.38 -0.02 3.64 16 46 H 0.05 2.48 7.93 -2.39 -0.02 2.46 16 47 H -0.03 -2.21 8.14 -2.38 -0.02 -2.23 16 48 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 50 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -86.62 400.57 0.05 -86.56 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.93 Total: 18.05 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 7.36 Total: 17.73 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -10.22 Total: -141.68 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.04 Total: -28.35 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -86.62 0.05 -86.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274442329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.252 kcal (2) G-P(sol) polarization free energy of solvation -86.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds