Wall clock time and date at job start Wed Apr 1 2020 03:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38627 * 120.40249 * 2 1 4 4 C 1.38574 * 118.56130 * 179.97438 * 3 2 1 5 5 N 1.32289 * 119.19774 * 359.97438 * 4 3 2 6 6 C 1.32481 * 120.74368 * 0.02562 * 5 4 3 7 7 N 1.38405 * 119.21980 * 179.97438 * 6 5 4 8 8 C 1.46810 * 110.99773 * 359.97438 * 7 6 5 9 9 C 1.53261 * 109.43645 * 170.76788 * 8 7 6 10 10 C 1.53232 * 108.61544 * 55.55818 * 9 8 7 11 11 C 1.52770 * 117.78117 * 94.06049 * 10 9 8 12 12 C 1.52735 * 117.82455 * 163.05114 * 10 9 8 13 13 H 1.09009 * 117.50518 * 359.77116 * 12 10 9 14 14 C 1.50694 * 117.50760 * 144.78566 * 12 10 9 15 15 O 1.21284 * 119.99869 * 0.02562 * 14 12 10 16 16 N 1.34773 * 120.00632 * 180.02562 * 14 12 10 17 17 C 1.46499 * 120.00553 * 179.97438 * 16 14 12 18 18 C 1.52993 * 109.47294 * 180.02562 * 17 16 14 19 19 C 1.50704 * 109.47033 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00305 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99972 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00148 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99792 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46785 * 90.00274 * 23 21 19 25 25 H 1.48499 * 109.46765 * 210.00140 * 23 21 19 26 26 H 1.48496 * 109.47373 * 330.00302 * 23 21 19 27 27 C 1.53211 * 114.77168 * 308.62057 * 10 9 8 28 28 C 1.46811 * 110.99926 * 235.27247 * 7 6 5 29 29 N 1.32264 * 120.40541 * 180.24730 * 2 1 3 30 30 H 1.09000 * 109.47029 * 90.00463 * 1 2 3 31 31 H 1.09003 * 109.47136 * 209.99843 * 1 2 3 32 32 H 1.08998 * 109.47371 * 329.99889 * 1 2 3 33 33 H 1.08012 * 120.71966 * 359.95493 * 3 2 1 34 34 H 1.08009 * 120.40090 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47877 * 290.75906 * 8 7 6 36 36 H 1.08995 * 109.48024 * 50.77716 * 8 7 6 37 37 H 1.09000 * 109.61753 * 175.31172 * 9 8 7 38 38 H 1.09004 * 109.61115 * 295.82437 * 9 8 7 39 39 H 1.08998 * 117.50151 * 215.27542 * 11 10 9 40 40 H 1.08994 * 117.50669 * 0.33783 * 11 10 9 41 41 H 0.96999 * 119.99529 * 0.02562 * 16 14 12 42 42 H 1.09001 * 109.47046 * 300.00504 * 17 16 14 43 43 H 1.08998 * 109.46665 * 60.00138 * 17 16 14 44 44 H 1.09001 * 109.47280 * 300.00109 * 18 17 16 45 45 H 1.08998 * 109.47357 * 60.00310 * 18 17 16 46 46 H 0.96995 * 120.00277 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.61601 * 291.64408 * 27 10 9 48 48 H 1.09000 * 109.61373 * 171.12404 * 27 10 9 49 49 H 1.09000 * 109.47535 * 309.22030 * 28 7 6 50 50 H 1.08992 * 109.47881 * 69.23902 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1956 0.0000 4 6 3.5936 1.1511 0.0005 5 7 4.2015 -0.0238 0.0016 6 6 3.5014 -1.1486 0.0015 7 7 4.1699 -2.3605 0.0021 8 6 5.6241 -2.1591 0.0020 9 6 6.3249 -3.5021 0.2345 10 6 5.8448 -4.4950 -0.8293 11 6 6.6832 -4.6400 -2.0981 12 6 6.6748 -5.7576 -1.0525 13 1 7.5704 -5.8853 -0.4443 14 6 5.9353 -7.0252 -1.3946 15 8 4.7258 -7.0165 -1.4838 16 7 6.6179 -8.1688 -1.6014 17 6 5.8989 -9.4013 -1.9334 18 6 6.9010 -10.5431 -2.1151 19 6 6.1614 -11.8108 -2.4573 20 1 5.0844 -11.8028 -2.5375 21 6 6.8597 -12.9809 -2.6679 22 7 6.2143 -14.0873 -2.9660 23 14 8.7226 -12.9946 -2.5299 24 1 9.1130 -13.3050 -1.1312 25 1 9.2787 -14.0278 -3.4400 26 1 9.2568 -11.6618 -2.9087 27 6 4.3225 -4.6072 -0.9623 28 6 3.7407 -3.1985 -1.1243 29 7 2.1764 -1.1407 -0.0049 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6869 2.1415 -0.0007 34 1 4.1698 2.0647 0.0010 35 1 5.9342 -1.7489 -0.9591 36 1 5.8950 -1.4653 0.7977 37 1 7.4039 -3.3710 0.1523 38 1 6.0742 -3.8788 1.2262 39 1 6.1536 -4.8217 -3.0333 40 1 7.5844 -4.0322 -2.1781 41 1 7.5852 -8.1759 -1.5297 42 1 5.2095 -9.6485 -1.1261 43 1 5.3395 -9.2577 -2.8577 44 1 7.5907 -10.2961 -2.9223 45 1 7.4601 -10.6865 -1.1905 46 1 6.7055 -14.9103 -3.1145 47 1 3.9104 -5.0729 -0.0671 48 1 4.0750 -5.2080 -1.8373 49 1 2.6523 -3.2548 -1.1414 50 1 4.0968 -2.7629 -2.0578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274672730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:24 Heat of formation + Delta-G solvation = 46.935689 kcal Electronic energy + Delta-G solvation = -29219.035315 eV Core-core repulsion = 25247.253960 eV Total energy + Delta-G solvation = -3971.781355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62359 -40.36188 -38.62089 -36.53433 -34.89487 -34.64097 -32.82824 -32.54710 -31.25283 -30.36455 -29.57748 -28.59927 -25.59795 -24.35341 -24.04475 -23.32672 -22.78533 -21.86203 -20.78337 -19.83246 -18.88969 -17.98478 -17.55944 -17.00699 -16.72924 -16.01042 -15.82868 -15.34634 -15.17187 -14.89244 -14.74862 -14.47522 -14.24726 -14.16698 -13.84041 -13.68305 -13.45547 -13.15966 -13.07251 -12.95254 -12.72553 -12.61342 -12.37986 -12.15028 -11.84365 -11.48841 -11.43943 -11.25754 -11.20463 -10.95063 -10.76515 -10.41721 -10.40154 -10.20218 -10.08903 -9.96366 -9.87679 -9.48792 -9.38546 -9.13300 -8.64612 -8.63087 -8.50982 -6.11295 -4.11409 0.63089 0.77818 2.72649 2.83615 3.24973 3.32608 3.33795 3.39852 3.47443 3.76214 3.78783 4.10926 4.30853 4.37411 4.45410 4.54760 4.67754 4.73136 4.77144 4.78631 5.00886 5.01426 5.03654 5.10860 5.19853 5.21633 5.24098 5.26821 5.35837 5.41901 5.48818 5.56141 5.64221 5.65270 5.79766 5.81621 5.89011 6.04165 6.13372 6.15148 6.20701 6.41044 6.51233 6.52878 6.56107 6.80474 6.97963 7.14264 7.23108 7.66589 7.86930 7.93190 8.43443 8.60659 8.93112 9.48818 11.01744 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027916 B = 0.001746 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.751085 B =16032.738556 C =16833.767180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.202 3.798 3 C -0.269 4.269 4 C 0.175 3.825 5 N -0.560 5.560 6 C 0.502 3.498 7 N -0.459 5.459 8 C 0.077 3.923 9 C -0.083 4.083 10 C -0.093 4.093 11 C -0.147 4.147 12 C -0.180 4.180 13 H 0.121 0.879 14 C 0.535 3.465 15 O -0.541 6.541 16 N -0.722 5.722 17 C 0.130 3.870 18 C -0.022 4.022 19 C -0.523 4.523 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.898 5.898 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 C -0.074 4.074 28 C 0.069 3.931 29 N -0.533 5.533 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.396 0.604 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.017 0.983 46 H 0.265 0.735 47 H 0.080 0.920 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 34.705 5.985 35.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.054 3.946 3 C -0.293 4.293 4 C 0.008 3.992 5 N -0.280 5.280 6 C 0.146 3.854 7 N -0.178 5.178 8 C -0.050 4.050 9 C -0.120 4.120 10 C -0.094 4.094 11 C -0.185 4.185 12 C -0.201 4.201 13 H 0.139 0.861 14 C 0.321 3.679 15 O -0.420 6.420 16 N -0.372 5.372 17 C 0.008 3.992 18 C -0.060 4.060 19 C -0.562 4.562 20 H 0.094 0.906 21 C -0.133 4.133 22 N -0.536 5.536 23 Si 0.709 3.291 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.191 1.191 27 C -0.112 4.112 28 C -0.057 4.057 29 N -0.252 5.252 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.162 0.838 34 H 0.184 0.816 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.229 0.771 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.035 0.965 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.123 0.877 49 H 0.112 0.888 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.316 33.254 6.274 34.002 hybrid contribution 1.396 0.918 -0.346 1.706 sum -1.920 34.171 5.928 34.735 Atomic orbital electron populations 1.20807 0.87747 1.04166 1.03779 1.21614 0.97415 0.87621 0.87991 1.22538 0.96482 1.00314 1.09987 1.23032 0.92126 0.95517 0.88497 1.68399 1.41249 0.98685 1.19701 1.21101 0.86452 0.88884 0.88946 1.58205 1.07532 1.09205 1.42832 1.22005 0.83233 0.97241 1.02517 1.21338 0.99217 0.92899 0.98572 1.21505 0.94613 0.95738 0.97512 1.23099 1.02254 0.99358 0.93764 1.22338 1.02656 0.89378 1.05761 0.86070 1.19585 0.87477 0.84005 0.76843 1.90640 1.13896 1.85333 1.52101 1.46293 1.10707 1.09765 1.70387 1.21502 0.95657 0.81795 1.00224 1.19793 0.95404 0.94044 0.96751 1.20924 0.95589 0.91367 1.48271 0.90629 1.25003 0.98484 0.95394 0.94402 1.69899 1.35956 1.00009 1.47774 0.86751 0.86017 0.78061 0.78237 1.20233 1.21263 1.19100 1.21478 0.90610 0.93575 1.05503 1.22393 1.01790 0.93204 0.88304 1.67876 1.08039 1.30633 1.18651 0.89565 0.89756 0.90036 0.83790 0.81609 0.92903 0.89239 0.90448 0.90245 0.88222 0.87976 0.77084 0.91955 0.91986 0.96030 0.96453 0.92551 0.90184 0.87746 0.88793 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.22 36.01 0.37 -0.21 16 2 C 0.20 1.75 6.82 -82.26 -0.56 1.19 16 3 C -0.27 -1.82 9.85 -39.31 -0.39 -2.21 16 4 C 0.17 1.32 11.30 -17.23 -0.19 1.13 16 5 N -0.56 -5.91 8.62 -13.93 -0.12 -6.03 16 6 C 0.50 5.99 7.18 -322.81 -2.32 3.67 16 7 N -0.46 -5.36 4.64 -175.21 -0.81 -6.17 16 8 C 0.08 0.75 4.71 -3.74 -0.02 0.73 16 9 C -0.08 -0.75 5.87 -26.48 -0.16 -0.90 16 10 C -0.09 -1.01 2.02 -154.53 -0.31 -1.32 16 11 C -0.15 -1.46 9.62 -26.83 -0.26 -1.72 16 12 C -0.18 -2.07 5.92 -91.89 -0.54 -2.62 16 13 H 0.12 1.14 8.14 -51.92 -0.42 0.72 16 14 C 0.54 8.45 7.59 -10.99 -0.08 8.36 16 15 O -0.54 -10.22 13.13 5.55 0.07 -10.14 16 16 N -0.72 -11.77 5.56 -60.30 -0.33 -12.10 16 17 C 0.13 2.65 5.61 -4.05 -0.02 2.63 16 18 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 19 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 20 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 21 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 22 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 23 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 27 C -0.07 -0.94 4.32 -26.48 -0.11 -1.05 16 28 C 0.07 0.80 5.38 -3.73 -0.02 0.78 16 29 N -0.53 -6.25 9.51 -10.15 -0.10 -6.34 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 33 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 34 H 0.17 0.67 8.06 -52.48 -0.42 0.24 16 35 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 36 H 0.09 0.87 7.53 -51.93 -0.39 0.48 16 37 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.40 5.41 8.47 -40.82 -0.35 5.07 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 45 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 48 H 0.10 1.52 6.00 -51.93 -0.31 1.21 16 49 H 0.09 1.15 7.43 -51.93 -0.39 0.77 16 50 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -34.12 401.61 -12.42 -46.54 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.12 Total: 3.69 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -5.17 Total: -5.30 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.59 Total: -57.24 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.12 -12.42 -46.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274672730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.475 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds