Wall clock time and date at job start Wed Apr 1 2020 03:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38627 * 120.40249 * 2 1 4 4 C 1.38574 * 118.56130 * 179.97438 * 3 2 1 5 5 N 1.32289 * 119.19774 * 359.97438 * 4 3 2 6 6 C 1.32481 * 120.74368 * 0.02562 * 5 4 3 7 7 N 1.38405 * 119.21980 * 179.97438 * 6 5 4 8 8 C 1.46810 * 110.99773 * 359.97438 * 7 6 5 9 9 C 1.53261 * 109.43645 * 170.76788 * 8 7 6 10 10 C 1.53232 * 108.61544 * 55.55818 * 9 8 7 11 11 C 1.52770 * 117.78117 * 94.06049 * 10 9 8 12 12 C 1.52735 * 117.82455 * 163.05114 * 10 9 8 13 13 H 1.09009 * 117.50518 * 359.77116 * 12 10 9 14 14 C 1.50694 * 117.50760 * 144.78566 * 12 10 9 15 15 O 1.21284 * 119.99869 * 0.02562 * 14 12 10 16 16 N 1.34773 * 120.00632 * 180.02562 * 14 12 10 17 17 C 1.46499 * 120.00553 * 179.97438 * 16 14 12 18 18 C 1.52993 * 109.47294 * 180.02562 * 17 16 14 19 19 C 1.50704 * 109.47033 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00305 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99972 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00148 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99792 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46785 * 90.00274 * 23 21 19 25 25 H 1.48499 * 109.46765 * 210.00140 * 23 21 19 26 26 H 1.48496 * 109.47373 * 330.00302 * 23 21 19 27 27 C 1.53211 * 114.77168 * 308.62057 * 10 9 8 28 28 C 1.46811 * 110.99926 * 235.27247 * 7 6 5 29 29 N 1.32264 * 120.40541 * 180.24730 * 2 1 3 30 30 H 1.09000 * 109.47029 * 90.00463 * 1 2 3 31 31 H 1.09003 * 109.47136 * 209.99843 * 1 2 3 32 32 H 1.08998 * 109.47371 * 329.99889 * 1 2 3 33 33 H 1.08012 * 120.71966 * 359.95493 * 3 2 1 34 34 H 1.08009 * 120.40090 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47877 * 290.75906 * 8 7 6 36 36 H 1.08995 * 109.48024 * 50.77716 * 8 7 6 37 37 H 1.09000 * 109.61753 * 175.31172 * 9 8 7 38 38 H 1.09004 * 109.61115 * 295.82437 * 9 8 7 39 39 H 1.08998 * 117.50151 * 215.27542 * 11 10 9 40 40 H 1.08994 * 117.50669 * 0.33783 * 11 10 9 41 41 H 0.96999 * 119.99529 * 0.02562 * 16 14 12 42 42 H 1.09001 * 109.47046 * 300.00504 * 17 16 14 43 43 H 1.08998 * 109.46665 * 60.00138 * 17 16 14 44 44 H 1.09001 * 109.47280 * 300.00109 * 18 17 16 45 45 H 1.08998 * 109.47357 * 60.00310 * 18 17 16 46 46 H 0.96995 * 120.00277 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.61601 * 291.64408 * 27 10 9 48 48 H 1.09000 * 109.61373 * 171.12404 * 27 10 9 49 49 H 1.09000 * 109.47535 * 309.22030 * 28 7 6 50 50 H 1.08992 * 109.47881 * 69.23902 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1956 0.0000 4 6 3.5936 1.1511 0.0005 5 7 4.2015 -0.0238 0.0016 6 6 3.5014 -1.1486 0.0015 7 7 4.1699 -2.3605 0.0021 8 6 5.6241 -2.1591 0.0020 9 6 6.3249 -3.5021 0.2345 10 6 5.8448 -4.4950 -0.8293 11 6 6.6832 -4.6400 -2.0981 12 6 6.6748 -5.7576 -1.0525 13 1 7.5704 -5.8853 -0.4443 14 6 5.9353 -7.0252 -1.3946 15 8 4.7258 -7.0165 -1.4838 16 7 6.6179 -8.1688 -1.6014 17 6 5.8989 -9.4013 -1.9334 18 6 6.9010 -10.5431 -2.1151 19 6 6.1614 -11.8108 -2.4573 20 1 5.0844 -11.8028 -2.5375 21 6 6.8597 -12.9809 -2.6679 22 7 6.2143 -14.0873 -2.9660 23 14 8.7226 -12.9946 -2.5299 24 1 9.1130 -13.3050 -1.1312 25 1 9.2787 -14.0278 -3.4400 26 1 9.2568 -11.6618 -2.9087 27 6 4.3225 -4.6072 -0.9623 28 6 3.7407 -3.1985 -1.1243 29 7 2.1764 -1.1407 -0.0049 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6869 2.1415 -0.0007 34 1 4.1698 2.0647 0.0010 35 1 5.9342 -1.7489 -0.9591 36 1 5.8950 -1.4653 0.7977 37 1 7.4039 -3.3710 0.1523 38 1 6.0742 -3.8788 1.2262 39 1 6.1536 -4.8217 -3.0333 40 1 7.5844 -4.0322 -2.1781 41 1 7.5852 -8.1759 -1.5297 42 1 5.2095 -9.6485 -1.1261 43 1 5.3395 -9.2577 -2.8577 44 1 7.5907 -10.2961 -2.9223 45 1 7.4601 -10.6865 -1.1905 46 1 6.7055 -14.9103 -3.1145 47 1 3.9104 -5.0729 -0.0671 48 1 4.0750 -5.2080 -1.8373 49 1 2.6523 -3.2548 -1.1414 50 1 4.0968 -2.7629 -2.0578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274672730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:23 Heat of formation + Delta-G solvation = 25.313033 kcal Electronic energy + Delta-G solvation = -29219.972944 eV Core-core repulsion = 25247.253960 eV Total energy + Delta-G solvation = -3972.718984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.33130 -41.38974 -39.66530 -37.49040 -36.46379 -35.28826 -34.79345 -33.28248 -32.19226 -32.00353 -30.44431 -29.18961 -27.29423 -25.09511 -24.80554 -24.59114 -23.57828 -22.70861 -22.48427 -21.07977 -19.75917 -19.01301 -18.69946 -18.28523 -17.97900 -16.80804 -16.57237 -16.49070 -16.37891 -16.23408 -15.77696 -15.69806 -15.30743 -15.20904 -14.94767 -14.66112 -14.47175 -14.32395 -14.10585 -14.05785 -13.64264 -13.36171 -13.24530 -13.15197 -13.05232 -12.96101 -12.75437 -12.28481 -12.18051 -12.13710 -11.90953 -11.76766 -11.65053 -11.62559 -11.51806 -11.07470 -11.00156 -10.79738 -10.76463 -10.43530 -10.14957 -10.00822 -9.36863 -8.30885 -6.38411 -0.02569 0.17098 1.38499 1.41260 1.52598 1.54793 2.11470 2.24537 2.36229 2.73475 2.82695 3.04101 3.17497 3.52653 3.57049 3.64939 3.70009 3.85337 3.87960 4.07518 4.15837 4.20083 4.23885 4.33310 4.36578 4.41891 4.42872 4.50972 4.56651 4.63941 4.71884 4.74101 4.75717 4.81373 4.87444 4.88113 4.99361 5.04178 5.05825 5.12024 5.18209 5.27634 5.37501 5.39735 5.42125 5.47753 5.65551 5.70407 5.81654 6.21282 6.29646 6.64647 6.71820 7.18277 7.26096 7.35364 8.85955 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027916 B = 0.001746 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.751085 B =16032.738556 C =16833.767180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.180 3.820 3 C -0.255 4.255 4 C 0.165 3.835 5 N -0.573 5.573 6 C 0.479 3.521 7 N -0.473 5.473 8 C 0.082 3.918 9 C -0.073 4.073 10 C -0.098 4.098 11 C -0.127 4.127 12 C -0.180 4.180 13 H 0.155 0.845 14 C 0.529 3.471 15 O -0.580 6.580 16 N -0.714 5.714 17 C 0.146 3.854 18 C -0.012 4.012 19 C -0.541 4.541 20 H 0.027 0.973 21 C 0.004 3.996 22 N -0.950 5.950 23 Si 0.960 3.040 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.236 1.236 27 C -0.067 4.067 28 C 0.083 3.917 29 N -0.568 5.568 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.182 0.818 34 H 0.203 0.797 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.413 0.587 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.268 0.732 47 H 0.052 0.948 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 38.410 6.573 38.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.033 3.967 3 C -0.278 4.278 4 C 0.000 4.000 5 N -0.294 5.294 6 C 0.123 3.877 7 N -0.193 5.193 8 C -0.044 4.044 9 C -0.111 4.111 10 C -0.099 4.099 11 C -0.165 4.165 12 C -0.201 4.201 13 H 0.173 0.827 14 C 0.317 3.683 15 O -0.461 6.461 16 N -0.365 5.365 17 C 0.022 3.978 18 C -0.050 4.050 19 C -0.580 4.580 20 H 0.045 0.955 21 C -0.194 4.194 22 N -0.590 5.590 23 Si 0.782 3.218 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.159 1.159 27 C -0.105 4.105 28 C -0.043 4.043 29 N -0.288 5.288 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.200 0.800 34 H 0.220 0.780 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.156 0.844 41 H 0.250 0.750 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.024 37.019 6.874 37.652 hybrid contribution 0.120 -0.153 -0.542 0.576 sum 0.145 36.866 6.332 37.406 Atomic orbital electron populations 1.20890 0.85842 1.04869 1.04520 1.22250 0.98865 0.87708 0.87890 1.22950 0.96349 1.01054 1.07449 1.23746 0.93079 0.95736 0.87487 1.68405 1.41606 0.99181 1.20202 1.21192 0.86770 0.89340 0.90448 1.58205 1.08639 1.09762 1.42712 1.22008 0.82205 0.97630 1.02582 1.21340 1.00874 0.91630 0.97217 1.21528 0.93074 0.96041 0.99263 1.23219 1.02856 0.97949 0.92444 1.22337 1.03280 0.87030 1.07470 0.82732 1.20419 0.87266 0.85032 0.75581 1.90648 1.15987 1.86014 1.53440 1.46050 1.11447 1.08507 1.70506 1.20985 0.95018 0.83235 0.98573 1.19643 0.95454 0.92127 0.97756 1.21270 0.94012 0.94217 1.48459 0.95483 1.26103 1.05004 0.94567 0.93681 1.70074 1.38645 1.01022 1.49291 0.85521 0.78029 0.79496 0.78721 1.19013 1.21187 1.15900 1.21237 0.92756 0.93566 1.02897 1.22121 1.00649 0.92759 0.88798 1.67865 1.08457 1.32627 1.19862 0.88689 0.91130 0.87213 0.80032 0.78000 0.92724 0.89106 0.87233 0.91088 0.89536 0.84361 0.75014 0.94124 0.94005 0.94456 0.94660 0.92319 0.92950 0.90264 0.90534 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.22 71.24 0.73 -0.28 16 2 C 0.18 2.97 6.82 42.59 0.29 3.26 16 3 C -0.26 -2.80 9.85 22.44 0.22 -2.58 16 4 C 0.16 2.10 11.30 84.70 0.96 3.06 16 5 N -0.57 -11.44 8.62 -198.00 -1.71 -13.15 16 6 C 0.48 11.51 7.18 261.49 1.88 13.39 16 7 N -0.47 -11.28 4.64 -708.25 -3.29 -14.57 16 8 C 0.08 1.50 4.71 86.41 0.41 1.91 16 9 C -0.07 -1.16 5.87 30.76 0.18 -0.98 16 10 C -0.10 -2.01 2.02 -52.20 -0.11 -2.11 16 11 C -0.13 -2.17 9.62 30.53 0.29 -1.88 16 12 C -0.18 -3.73 5.92 -11.61 -0.07 -3.80 16 13 H 0.16 2.21 8.14 -2.38 -0.02 2.19 16 14 C 0.53 16.53 7.59 87.66 0.67 17.19 16 15 O -0.58 -22.96 13.13 -3.04 -0.04 -23.00 16 16 N -0.71 -22.50 5.56 -463.08 -2.57 -25.07 16 17 C 0.15 6.06 5.61 86.38 0.48 6.54 16 18 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 19 C -0.54 -31.31 9.66 25.60 0.25 -31.07 16 20 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 21 C 0.00 0.20 5.47 84.66 0.46 0.67 16 22 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 23 Si 0.96 42.52 27.47 68.60 1.88 44.40 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 27 C -0.07 -1.80 4.32 30.76 0.13 -1.66 16 28 C 0.08 2.04 5.38 86.41 0.46 2.51 16 29 N -0.57 -13.69 9.51 -186.03 -1.77 -15.46 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.40 8.09 -2.39 -0.02 0.38 16 33 H 0.18 0.51 8.06 -2.90 -0.02 0.49 16 34 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 36 H 0.09 1.63 7.53 -2.39 -0.02 1.62 16 37 H 0.11 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.41 10.09 8.47 -92.71 -0.79 9.31 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.57 7.20 -2.39 -0.02 1.56 16 45 H 0.04 1.47 7.57 -2.39 -0.02 1.46 16 46 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 47 H 0.05 1.66 8.12 -2.39 -0.02 1.64 16 48 H 0.08 2.51 6.00 -2.39 -0.01 2.50 16 49 H 0.08 2.10 7.43 -2.39 -0.02 2.08 16 50 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 Total: -1.00 -80.46 401.61 0.28 -80.18 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.10 Total: 22.35 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 7.36 Total: 3.75 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -9.03 Total: -127.68 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.04 Total: -23.00 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.88 Total: 44.40 kcal Total: -80.46 0.28 -80.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274672730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.497 kcal (2) G-P(sol) polarization free energy of solvation -80.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds