Wall clock time and date at job start Wed Apr 1 2020 04:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38604 * 120.71878 * 2 1 4 4 N 1.32271 * 119.19843 * 179.97438 * 3 2 1 5 5 C 1.32496 * 120.73830 * 359.97438 * 4 3 2 6 6 N 1.38405 * 119.21736 * 179.97438 * 5 4 3 7 7 C 1.46970 * 111.00000 * 15.30852 * 6 5 4 8 8 C 1.53048 * 109.46852 * 175.37941 * 7 6 5 9 9 C 1.53130 * 109.34858 * 59.83477 * 8 7 6 10 10 C 1.53240 * 109.06744 * 301.68201 * 9 8 7 11 11 C 1.45972 * 111.00435 * 250.82459 * 6 5 4 12 12 C 1.53992 * 110.65398 * 307.18438 * 11 6 5 13 13 C 1.51423 * 104.06642 * 94.01676 * 12 11 6 14 14 O 1.21285 * 124.94452 * 195.75522 * 13 12 11 15 15 N 1.34491 * 110.11193 * 15.71560 * 13 12 11 16 16 C 1.46506 * 124.35309 * 180.34955 * 15 13 12 17 17 C 1.53000 * 109.46669 * 97.94507 * 16 15 13 18 18 C 1.50703 * 109.46625 * 182.14888 * 17 16 15 19 19 H 1.08000 * 120.00122 * 35.74014 * 18 17 16 20 20 C 1.37876 * 119.99906 * 215.73238 * 18 17 16 21 21 N 1.31523 * 119.99877 * 151.11915 * 20 18 17 22 22 Si 1.86796 * 120.00280 * 331.11724 * 20 18 17 23 23 H 1.48499 * 109.46968 * 58.16371 * 22 20 18 24 24 H 1.48496 * 109.47520 * 178.16678 * 22 20 18 25 25 H 1.48503 * 109.46907 * 298.16764 * 22 20 18 26 26 C 1.46924 * 111.29692 * 0.62063 * 15 13 12 27 27 N 1.32496 * 121.56831 * 0.27606 * 5 4 3 28 28 C 1.32282 * 120.73720 * 359.44543 * 27 5 4 29 29 H 1.09008 * 109.46972 * 85.88058 * 1 2 3 30 30 H 1.08994 * 109.46937 * 205.87475 * 1 2 3 31 31 H 1.08999 * 109.47219 * 325.88224 * 1 2 3 32 32 H 1.08001 * 120.40074 * 359.95093 * 3 2 1 33 33 H 1.08997 * 109.47415 * 55.38081 * 7 6 5 34 34 H 1.09002 * 109.47250 * 295.37476 * 7 6 5 35 35 H 1.09006 * 109.48996 * 299.87377 * 8 7 6 36 36 H 1.08996 * 109.49205 * 179.80219 * 8 7 6 37 37 H 1.09003 * 109.53421 * 181.80760 * 9 8 7 38 38 H 1.08997 * 109.60517 * 61.60076 * 9 8 7 39 39 H 1.09000 * 109.48178 * 296.42046 * 10 9 8 40 40 H 1.09003 * 109.47630 * 176.39005 * 10 9 8 41 41 H 1.08994 * 110.51571 * 335.36756 * 12 11 6 42 42 H 1.09000 * 110.50693 * 212.65611 * 12 11 6 43 43 H 1.09006 * 109.46606 * 217.93905 * 16 15 13 44 44 H 1.08997 * 109.46950 * 337.94260 * 16 15 13 45 45 H 1.09001 * 109.47009 * 302.14600 * 17 16 15 46 46 H 1.08993 * 109.47623 * 62.15308 * 17 16 15 47 47 H 0.96994 * 119.99630 * 180.02562 * 21 20 18 48 48 H 1.08991 * 110.27074 * 102.29295 * 26 15 13 49 49 H 1.09000 * 110.27037 * 224.35619 * 26 15 13 50 50 H 1.07996 * 120.40341 * 180.29948 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1916 0.0000 4 7 3.5373 1.1565 0.0005 5 6 4.1841 0.0001 0.0015 6 7 5.5681 0.0001 0.0015 7 6 6.0948 1.3238 0.3626 8 6 7.6204 1.2554 0.4644 9 6 8.1999 0.8206 -0.8847 10 6 7.6107 -0.5414 -1.2670 11 6 6.0913 -0.4487 -1.2852 12 6 5.4730 -1.8024 -1.6807 13 6 4.2904 -1.4273 -2.5489 14 8 3.3811 -2.1735 -2.8443 15 7 4.3948 -0.1460 -2.9440 16 6 3.4149 0.5410 -3.7892 17 6 2.4709 1.3637 -2.9100 18 6 1.4308 2.0281 -3.7747 19 1 1.0440 1.5166 -4.6437 20 6 0.9727 3.2890 -3.4563 21 7 0.5486 4.0939 -4.4061 22 14 0.9544 3.8541 -1.6759 23 1 2.3298 3.7847 -1.1204 24 1 0.4621 5.2533 -1.6057 25 1 0.0566 2.9733 -0.8863 26 6 5.6210 0.4745 -2.4243 27 7 3.5374 -1.1563 -0.0034 28 6 2.2151 -1.1916 0.0015 29 1 -0.3633 0.0738 -1.0251 30 1 -0.3633 -0.9246 0.4485 31 1 -0.3633 0.8508 0.5764 32 1 1.6934 2.1372 -0.0008 33 1 5.6800 1.6304 1.3228 34 1 5.8139 2.0477 -0.4024 35 1 7.9017 0.5332 1.2309 36 1 8.0116 2.2378 0.7287 37 1 9.2841 0.7398 -0.8066 38 1 7.9430 1.5559 -1.6472 39 1 7.9205 -1.2893 -0.5371 40 1 7.9691 -0.8278 -2.2558 41 1 5.1402 -2.3436 -0.7951 42 1 6.1887 -2.3982 -2.2471 43 1 3.9339 1.2022 -4.4831 44 1 2.8396 -0.1954 -4.3503 45 1 1.9805 0.7079 -2.1907 46 1 3.0411 2.1250 -2.3778 47 1 0.2268 4.9810 -4.1820 48 1 6.3778 0.5285 -3.2068 49 1 5.4054 1.4704 -2.0371 50 1 1.6935 -2.1372 0.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274711522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:22 Heat of formation + Delta-G solvation = 49.388858 kcal Electronic energy + Delta-G solvation = -33949.702881 eV Core-core repulsion = 29978.027903 eV Total energy + Delta-G solvation = -3971.674978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.98913 -39.92787 -38.36728 -35.52019 -34.56653 -34.07452 -33.16963 -32.32009 -31.97453 -30.13398 -28.11239 -27.23457 -26.13840 -24.77601 -24.54613 -23.59836 -22.14928 -21.64587 -20.97115 -19.60953 -18.52046 -17.59302 -17.38723 -17.15487 -16.40425 -15.80939 -15.24335 -14.89871 -14.72885 -14.50093 -14.29989 -14.18794 -14.07453 -13.88361 -13.51035 -13.46533 -13.21358 -13.18125 -12.86648 -12.69387 -12.41448 -12.24873 -12.24038 -12.08815 -11.69795 -11.43668 -11.27941 -11.08629 -10.89131 -10.84707 -10.70035 -10.66725 -10.46784 -10.36753 -10.05392 -9.98030 -9.57021 -9.48751 -9.16689 -8.79015 -8.33004 -8.22051 -8.04443 -6.26806 -4.07972 1.20396 1.44288 3.06941 3.16797 3.20171 3.23268 3.28220 3.52474 4.01741 4.29099 4.31926 4.35854 4.52014 4.66301 4.75240 4.80831 4.90693 4.96763 5.03420 5.06161 5.14352 5.14862 5.23055 5.35065 5.43205 5.54814 5.56638 5.65075 5.75106 5.77114 5.83419 5.86462 5.87849 5.93543 5.94720 5.99787 6.13245 6.15966 6.25840 6.29972 6.39076 6.50585 6.68219 6.77101 6.88778 7.00973 7.08393 7.35123 7.45314 7.68950 7.72135 8.40479 8.41201 8.67796 8.91076 9.46042 10.86211 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.005534 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.894606 B = 5058.053729 C = 5262.504449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.199 4.199 3 C 0.178 3.822 4 N -0.535 5.535 5 C 0.476 3.524 6 N -0.448 5.448 7 C 0.064 3.936 8 C -0.118 4.118 9 C -0.125 4.125 10 C -0.097 4.097 11 C 0.114 3.886 12 C -0.150 4.150 13 C 0.517 3.483 14 O -0.534 6.534 15 N -0.617 5.617 16 C 0.132 3.868 17 C -0.020 4.020 18 C -0.537 4.537 19 H 0.070 0.930 20 C 0.087 3.913 21 N -0.873 5.873 22 Si 0.844 3.156 23 H -0.258 1.258 24 H -0.290 1.290 25 H -0.266 1.266 26 C 0.073 3.927 27 N -0.511 5.511 28 C 0.172 3.828 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.012 0.988 46 H 0.027 0.973 47 H 0.264 0.736 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.232 -6.977 11.115 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.204 4.204 3 C 0.011 3.989 4 N -0.252 5.252 5 C 0.120 3.880 6 N -0.169 5.169 7 C -0.062 4.062 8 C -0.156 4.156 9 C -0.163 4.163 10 C -0.135 4.135 11 C 0.024 3.976 12 C -0.191 4.191 13 C 0.305 3.695 14 O -0.411 6.411 15 N -0.351 5.351 16 C 0.012 3.988 17 C -0.058 4.058 18 C -0.574 4.574 19 H 0.088 0.912 20 C -0.117 4.117 21 N -0.508 5.508 22 Si 0.671 3.329 23 H -0.183 1.183 24 H -0.217 1.217 25 H -0.192 1.192 26 C -0.053 4.053 27 N -0.228 5.228 28 C 0.006 3.994 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.173 0.827 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.150 0.850 42 H 0.119 0.881 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.030 0.970 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 13.829 -7.468 11.183 19.289 hybrid contribution -1.432 1.235 0.227 1.904 sum 12.397 -6.233 11.411 17.965 Atomic orbital electron populations 1.20645 0.89394 1.02381 1.03726 1.21492 0.99202 0.95322 1.04395 1.22979 0.88998 0.98305 0.88579 1.68333 1.10497 1.29523 1.16896 1.20774 0.90463 0.84691 0.92058 1.58602 1.01338 1.28647 1.28327 1.22078 0.94456 0.87520 1.02193 1.21651 0.94027 1.01978 0.97896 1.21670 1.00234 0.96838 0.97544 1.21463 0.90697 0.98577 1.02742 1.21397 0.95939 0.94897 0.85362 1.22647 0.96952 0.97055 1.02433 1.20763 0.87090 0.81846 0.79829 1.90658 1.36809 1.54553 1.59061 1.48656 1.22717 1.12243 1.51459 1.21712 0.89030 0.95394 0.92647 1.19985 0.94550 0.95292 0.96015 1.20763 1.23172 1.00998 1.12483 0.91181 1.24890 0.94967 0.95474 0.96395 1.70148 1.41546 1.06994 1.32149 0.87553 0.79489 0.77596 0.88231 1.18295 1.21665 1.19243 1.22792 0.87637 0.98454 0.96392 1.68029 1.09857 1.28623 1.16254 1.22866 0.88725 0.97886 0.89972 0.89748 0.91379 0.91526 0.82711 0.89954 0.92057 0.90961 0.90865 0.91165 0.91615 0.90072 0.90384 0.84984 0.88125 0.91521 0.90856 0.97034 0.95400 0.92568 0.90624 0.89767 0.81839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.06 36.01 0.36 -1.17 16 2 C -0.20 -3.43 4.56 -104.35 -0.48 -3.90 16 3 C 0.18 3.37 7.44 -17.23 -0.13 3.24 16 4 N -0.53 -9.90 8.22 -13.93 -0.11 -10.01 16 5 C 0.48 8.14 5.02 -322.80 -1.62 6.51 16 6 N -0.45 -6.36 4.55 -160.40 -0.73 -7.09 16 7 C 0.06 0.81 4.42 -3.76 -0.02 0.79 16 8 C -0.12 -1.06 6.07 -26.64 -0.16 -1.22 16 9 C -0.13 -1.03 5.82 -26.54 -0.15 -1.18 16 10 C -0.10 -0.88 4.65 -27.00 -0.13 -1.01 16 11 C 0.11 1.47 0.70 -131.47 -0.09 1.38 16 12 C -0.15 -2.18 5.41 -27.01 -0.15 -2.33 16 13 C 0.52 9.78 5.66 -10.76 -0.06 9.72 16 14 O -0.53 -11.96 17.49 5.55 0.10 -11.87 16 15 N -0.62 -11.54 2.51 -172.51 -0.43 -11.98 16 16 C 0.13 2.90 5.99 -4.04 -0.02 2.87 16 17 C -0.02 -0.48 3.60 -27.88 -0.10 -0.58 16 18 C -0.54 -15.01 9.42 -34.44 -0.32 -15.34 16 19 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 20 C 0.09 2.46 5.44 -17.82 -0.10 2.36 16 21 N -0.87 -25.95 13.96 55.43 0.77 -25.18 16 22 Si 0.84 20.16 24.28 -169.99 -4.13 16.03 16 23 H -0.26 -6.00 6.60 56.52 0.37 -5.63 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -5.91 6.78 56.52 0.38 -5.53 16 26 C 0.07 1.09 5.03 -3.30 -0.02 1.08 16 27 N -0.51 -8.86 6.35 -13.93 -0.09 -8.95 16 28 C 0.17 2.88 10.92 -17.22 -0.19 2.69 16 29 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 30 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.16 3.06 4.07 -52.49 -0.21 2.84 16 33 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 34 H 0.06 0.87 5.95 -51.93 -0.31 0.56 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.57 7.60 -51.93 -0.39 0.18 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 41 H 0.13 2.04 6.47 -51.93 -0.34 1.71 16 42 H 0.10 1.20 7.86 -51.93 -0.41 0.79 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.07 1.72 7.76 -51.93 -0.40 1.32 16 45 H 0.01 0.28 4.86 -51.93 -0.25 0.03 16 46 H 0.03 0.68 5.90 -51.93 -0.31 0.38 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.08 0.97 7.78 -51.93 -0.40 0.57 16 49 H 0.08 1.40 5.99 -51.93 -0.31 1.09 16 50 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -32.83 367.84 -10.03 -42.86 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.58 Total: 6.73 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -3.37 Total: 3.93 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.59 Total: -63.21 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.10 Total: -11.87 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.13 Total: 16.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.83 -10.03 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274711522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.244 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds