Wall clock time and date at job start Wed Apr 1 2020 04:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38601 * 120.71819 * 2 1 4 4 N 1.32282 * 119.19203 * 180.02562 * 3 2 1 5 5 C 1.32487 * 120.74130 * 0.02562 * 4 3 2 6 6 N 1.38415 * 119.21812 * 179.97438 * 5 4 3 7 7 C 1.46854 * 111.00209 * 179.97438 * 6 5 4 8 8 C 1.53139 * 109.44702 * 186.35727 * 7 6 5 9 9 C 1.52550 * 109.31409 * 301.72618 * 8 7 6 10 10 C 1.54117 * 110.09098 * 178.13217 * 9 8 7 11 11 C 1.54594 * 101.65033 * 143.30348 * 10 9 8 12 12 N 1.46817 * 105.49553 * 335.01896 * 11 10 9 13 13 C 1.46500 * 124.36211 * 196.92308 * 12 11 10 14 14 C 1.53006 * 109.46998 * 89.99797 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00305 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46901 * 89.99815 * 19 17 15 21 21 H 1.48488 * 109.47487 * 210.00255 * 19 17 15 22 22 H 1.48503 * 109.47026 * 330.00635 * 19 17 15 23 23 C 1.34568 * 111.27464 * 17.18111 * 12 11 10 24 24 O 1.21290 * 125.02838 * 179.00919 * 23 12 11 25 25 C 1.52550 * 110.48912 * 56.31915 * 9 8 7 26 26 C 1.46851 * 110.99857 * 304.35959 * 6 5 4 27 27 N 1.32492 * 121.57047 * 0.26834 * 5 4 3 28 28 C 1.32279 * 120.73546 * 359.44992 * 27 5 4 29 29 H 1.08999 * 109.47348 * 90.00161 * 1 2 3 30 30 H 1.09004 * 109.47612 * 210.00574 * 1 2 3 31 31 H 1.09008 * 109.47416 * 330.00229 * 1 2 3 32 32 H 1.07996 * 120.40841 * 0.04112 * 3 2 1 33 33 H 1.08999 * 109.47074 * 66.36516 * 7 6 5 34 34 H 1.08999 * 109.48154 * 306.35760 * 7 6 5 35 35 H 1.09005 * 109.50069 * 181.77850 * 8 7 6 36 36 H 1.08997 * 109.50040 * 61.67653 * 8 7 6 37 37 H 1.08996 * 110.99566 * 25.21298 * 10 9 8 38 38 H 1.09004 * 110.99250 * 261.39146 * 10 9 8 39 39 H 1.09003 * 110.23944 * 216.01638 * 11 10 9 40 40 H 1.08998 * 110.31512 * 94.06459 * 11 10 9 41 41 H 1.09000 * 109.47175 * 329.99929 * 13 12 11 42 42 H 1.09001 * 109.47297 * 209.99436 * 13 12 11 43 43 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 44 44 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 45 45 H 0.97002 * 120.00008 * 179.97438 * 18 17 15 46 46 H 1.08994 * 109.49553 * 63.64876 * 25 9 8 47 47 H 1.09003 * 109.49187 * 183.74094 * 25 9 8 48 48 H 1.08994 * 109.46887 * 293.65037 * 26 6 5 49 49 H 1.09002 * 109.47064 * 53.64839 * 26 6 5 50 50 H 1.07998 * 120.40136 * 180.30228 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1915 0.0000 4 7 3.5373 1.1563 -0.0005 5 6 4.1840 0.0000 -0.0015 6 7 5.5681 -0.0001 -0.0026 7 6 6.0944 -1.3711 -0.0030 8 6 7.6171 -1.3328 0.1557 9 6 8.2225 -0.5154 -0.9811 10 6 9.7518 -0.4259 -0.8128 11 6 10.2320 -0.4951 -2.2806 12 7 9.1672 -1.1960 -3.0091 13 6 9.3306 -1.7992 -4.3341 14 6 9.7851 -3.2521 -4.1805 15 6 9.9537 -3.8723 -5.5436 16 1 9.7560 -3.2888 -6.4306 17 6 10.3592 -5.1851 -5.6583 18 7 10.5059 -5.7265 -6.8478 19 14 10.7004 -6.1947 -4.1240 20 1 9.4539 -6.8773 -3.6934 21 1 11.7432 -7.2093 -4.4208 22 1 11.1751 -5.2999 -3.0381 23 6 8.0204 -1.2081 -2.3052 24 8 6.9791 -1.7048 -2.6794 25 6 7.6162 0.8841 -1.0142 26 6 6.0935 0.7742 -1.1344 27 7 3.5373 -1.1564 -0.0074 28 6 2.2150 -1.1916 -0.0015 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5138 32 1 1.6935 2.1372 0.0007 33 1 5.8392 -1.8579 -0.9443 34 1 5.6566 -1.9288 0.8249 35 1 8.0119 -2.3483 0.1238 36 1 7.8719 -0.8727 1.1104 37 1 10.1314 -1.2704 -0.2376 38 1 10.0393 0.5192 -0.3521 39 1 11.1651 -1.0547 -2.3462 40 1 10.3660 0.5091 -2.6827 41 1 10.0792 -1.2419 -4.8972 42 1 8.3797 -1.7703 -4.8662 43 1 10.7358 -3.2810 -3.6484 44 1 9.0364 -3.8094 -3.6174 45 1 10.7916 -6.6500 -6.9284 46 1 7.8712 1.4128 -0.0959 47 1 8.0102 1.4310 -1.8709 48 1 5.8381 0.2723 -2.0676 49 1 5.6551 1.7721 -1.1267 50 1 1.6934 -2.1373 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274711666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:26 Heat of formation + Delta-G solvation = 27.731969 kcal Electronic energy + Delta-G solvation = -30844.242575 eV Core-core repulsion = 26871.628484 eV Total energy + Delta-G solvation = -3972.614091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.62753 -40.83396 -38.05699 -36.21587 -34.99884 -33.93130 -33.44960 -32.52122 -31.11531 -30.78251 -28.87579 -27.19885 -25.65287 -25.16197 -24.77540 -23.12563 -22.57569 -21.64331 -21.26621 -20.21847 -18.50140 -18.01657 -17.76426 -17.01729 -16.06455 -15.86410 -15.49085 -15.26227 -14.77118 -14.75556 -14.59589 -14.29180 -14.24130 -13.83693 -13.66616 -13.55480 -13.30060 -13.17519 -12.94602 -12.90647 -12.74994 -12.60844 -12.32085 -12.17502 -12.02359 -11.72097 -11.48529 -11.27224 -11.10211 -11.01611 -10.98001 -10.58543 -10.45021 -10.42611 -10.20854 -10.04900 -9.84649 -9.33569 -9.26202 -9.10001 -8.57110 -8.30993 -8.17923 -6.08113 -4.07200 0.75952 0.95878 2.90076 3.04281 3.30182 3.36887 3.39844 3.44012 3.60157 4.00716 4.25410 4.37765 4.39897 4.42701 4.51489 4.56595 4.61529 4.63437 4.89429 4.96724 5.04818 5.19059 5.22426 5.26200 5.29922 5.34447 5.36540 5.48851 5.54181 5.61099 5.63656 5.66987 5.70774 5.75415 5.84269 5.87362 5.91251 5.96332 6.04008 6.12485 6.26512 6.30382 6.57754 6.60365 6.62865 6.80991 7.12976 7.16960 7.30885 7.62242 7.73414 8.02241 8.45423 8.56952 8.94768 9.53791 11.04949 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.002758 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.847439 B =10149.647335 C =11169.089687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.234 4.234 3 C 0.172 3.828 4 N -0.531 5.531 5 C 0.494 3.506 6 N -0.456 5.456 7 C 0.057 3.943 8 C -0.094 4.094 9 C -0.099 4.099 10 C -0.124 4.124 11 C 0.099 3.901 12 N -0.613 5.613 13 C 0.136 3.864 14 C -0.023 4.023 15 C -0.521 4.521 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.520 3.480 24 O -0.525 6.525 25 C -0.091 4.091 26 C 0.063 3.937 27 N -0.542 5.542 28 C 0.174 3.826 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.017 0.983 44 H 0.015 0.985 45 H 0.264 0.736 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.058 0.942 49 H 0.092 0.908 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.637 16.537 18.392 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.240 4.240 3 C 0.003 3.997 4 N -0.248 5.248 5 C 0.139 3.861 6 N -0.176 5.176 7 C -0.070 4.070 8 C -0.132 4.132 9 C -0.103 4.103 10 C -0.161 4.161 11 C -0.024 4.024 12 N -0.346 5.346 13 C 0.016 3.984 14 C -0.061 4.061 15 C -0.560 4.560 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.192 1.192 23 C 0.307 3.693 24 O -0.402 6.402 25 C -0.129 4.129 26 C -0.063 4.063 27 N -0.261 5.261 28 C 0.006 3.994 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.110 0.890 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.812 16.299 18.398 27.270 hybrid contribution -0.805 -1.067 0.129 1.343 sum -12.617 15.232 18.527 27.100 Atomic orbital electron populations 1.20545 0.89334 1.03068 1.02569 1.21502 0.98961 0.95569 1.07984 1.22965 0.88699 0.98142 0.89844 1.67997 1.10012 1.29015 1.17777 1.21063 0.91125 0.84283 0.89672 1.58379 1.00547 1.16999 1.41643 1.22292 0.93937 0.86006 1.04756 1.21469 0.94433 1.00185 0.97139 1.21128 0.96797 0.97078 0.95260 1.22679 0.93161 1.03798 0.96499 1.22080 0.92005 0.97167 0.91160 1.48626 1.11178 1.55105 1.19685 1.21580 1.01793 0.95199 0.79808 1.19879 0.96103 0.91853 0.98305 1.20956 1.46137 0.97318 0.91573 0.90835 1.24975 0.94729 0.97621 0.95857 1.69905 1.47444 1.14068 1.22503 0.86762 0.78351 0.80129 0.83945 1.20206 1.21315 1.19161 1.20471 0.83566 0.79214 0.86067 1.90661 1.28575 1.47130 1.73810 1.21440 0.93633 0.94374 1.03497 1.22245 0.95303 0.98417 0.90309 1.68448 1.10397 1.29453 1.17797 1.23010 0.88920 0.98218 0.89216 0.91028 0.91251 0.91296 0.81621 0.89605 0.89784 0.90397 0.90289 0.89771 0.89163 0.90149 0.91370 0.91011 0.90638 0.96508 0.96630 0.92633 0.89627 0.90374 0.92379 0.88956 0.81721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.06 36.01 0.36 -0.14 16 2 C -0.23 -2.05 5.91 -104.35 -0.62 -2.67 16 3 C 0.17 1.66 11.00 -17.22 -0.19 1.47 16 4 N -0.53 -6.86 9.64 -13.93 -0.13 -7.00 16 5 C 0.49 7.06 7.18 -322.80 -2.32 4.75 16 6 N -0.46 -6.31 4.70 -175.30 -0.82 -7.13 16 7 C 0.06 0.81 4.41 -3.78 -0.02 0.79 16 8 C -0.09 -1.15 4.78 -26.89 -0.13 -1.28 16 9 C -0.10 -1.23 0.55 -155.49 -0.09 -1.32 16 10 C -0.12 -1.23 6.21 -25.31 -0.16 -1.39 16 11 C 0.10 1.21 7.35 -3.03 -0.02 1.19 16 12 N -0.61 -10.39 2.94 -172.46 -0.51 -10.89 16 13 C 0.14 2.77 5.88 -4.04 -0.02 2.74 16 14 C -0.02 -0.56 4.37 -27.88 -0.12 -0.69 16 15 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 16 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 19 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 C 0.52 8.97 6.32 -11.04 -0.07 8.90 16 24 O -0.53 -11.08 13.81 5.55 0.08 -11.00 16 25 C -0.09 -0.99 4.76 -26.89 -0.13 -1.12 16 26 C 0.06 0.83 5.11 -3.78 -0.02 0.81 16 27 N -0.54 -7.61 8.67 -13.93 -0.12 -7.73 16 28 C 0.17 1.85 11.00 -17.22 -0.19 1.66 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.30 8.10 -51.93 -0.42 -0.13 16 31 H 0.07 0.27 8.10 -51.92 -0.42 -0.15 16 32 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.09 1.52 5.76 -51.93 -0.30 1.22 16 34 H 0.08 1.17 7.67 -51.93 -0.40 0.77 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 38 H 0.09 0.65 7.87 -51.93 -0.41 0.24 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.65 7.92 -51.93 -0.41 1.24 16 43 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 44 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.93 6.65 -51.93 -0.35 0.59 16 49 H 0.09 1.14 7.53 -51.93 -0.39 0.75 16 50 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -35.83 391.78 -11.74 -47.57 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.09 Total: -0.44 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -4.15 Total: 0.37 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.81 Total: -59.93 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.83 -11.74 -47.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274711666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.299 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds