Wall clock time and date at job start Wed Apr 1 2020 04:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38601 * 120.71819 * 2 1 4 4 N 1.32282 * 119.19203 * 180.02562 * 3 2 1 5 5 C 1.32487 * 120.74130 * 0.02562 * 4 3 2 6 6 N 1.38415 * 119.21812 * 179.97438 * 5 4 3 7 7 C 1.46854 * 111.00209 * 179.97438 * 6 5 4 8 8 C 1.53139 * 109.44702 * 186.35727 * 7 6 5 9 9 C 1.52550 * 109.31409 * 301.72618 * 8 7 6 10 10 C 1.54117 * 110.09098 * 178.13217 * 9 8 7 11 11 C 1.54594 * 101.65033 * 143.30348 * 10 9 8 12 12 N 1.46817 * 105.49553 * 335.01896 * 11 10 9 13 13 C 1.46500 * 124.36211 * 196.92308 * 12 11 10 14 14 C 1.53006 * 109.46998 * 89.99797 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00305 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46901 * 89.99815 * 19 17 15 21 21 H 1.48488 * 109.47487 * 210.00255 * 19 17 15 22 22 H 1.48503 * 109.47026 * 330.00635 * 19 17 15 23 23 C 1.34568 * 111.27464 * 17.18111 * 12 11 10 24 24 O 1.21290 * 125.02838 * 179.00919 * 23 12 11 25 25 C 1.52550 * 110.48912 * 56.31915 * 9 8 7 26 26 C 1.46851 * 110.99857 * 304.35959 * 6 5 4 27 27 N 1.32492 * 121.57047 * 0.26834 * 5 4 3 28 28 C 1.32279 * 120.73546 * 359.44992 * 27 5 4 29 29 H 1.08999 * 109.47348 * 90.00161 * 1 2 3 30 30 H 1.09004 * 109.47612 * 210.00574 * 1 2 3 31 31 H 1.09008 * 109.47416 * 330.00229 * 1 2 3 32 32 H 1.07996 * 120.40841 * 0.04112 * 3 2 1 33 33 H 1.08999 * 109.47074 * 66.36516 * 7 6 5 34 34 H 1.08999 * 109.48154 * 306.35760 * 7 6 5 35 35 H 1.09005 * 109.50069 * 181.77850 * 8 7 6 36 36 H 1.08997 * 109.50040 * 61.67653 * 8 7 6 37 37 H 1.08996 * 110.99566 * 25.21298 * 10 9 8 38 38 H 1.09004 * 110.99250 * 261.39146 * 10 9 8 39 39 H 1.09003 * 110.23944 * 216.01638 * 11 10 9 40 40 H 1.08998 * 110.31512 * 94.06459 * 11 10 9 41 41 H 1.09000 * 109.47175 * 329.99929 * 13 12 11 42 42 H 1.09001 * 109.47297 * 209.99436 * 13 12 11 43 43 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 44 44 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 45 45 H 0.97002 * 120.00008 * 179.97438 * 18 17 15 46 46 H 1.08994 * 109.49553 * 63.64876 * 25 9 8 47 47 H 1.09003 * 109.49187 * 183.74094 * 25 9 8 48 48 H 1.08994 * 109.46887 * 293.65037 * 26 6 5 49 49 H 1.09002 * 109.47064 * 53.64839 * 26 6 5 50 50 H 1.07998 * 120.40136 * 180.30228 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1915 0.0000 4 7 3.5373 1.1563 -0.0005 5 6 4.1840 0.0000 -0.0015 6 7 5.5681 -0.0001 -0.0026 7 6 6.0944 -1.3711 -0.0030 8 6 7.6171 -1.3328 0.1557 9 6 8.2225 -0.5154 -0.9811 10 6 9.7518 -0.4259 -0.8128 11 6 10.2320 -0.4951 -2.2806 12 7 9.1672 -1.1960 -3.0091 13 6 9.3306 -1.7992 -4.3341 14 6 9.7851 -3.2521 -4.1805 15 6 9.9537 -3.8723 -5.5436 16 1 9.7560 -3.2888 -6.4306 17 6 10.3592 -5.1851 -5.6583 18 7 10.5059 -5.7265 -6.8478 19 14 10.7004 -6.1947 -4.1240 20 1 9.4539 -6.8773 -3.6934 21 1 11.7432 -7.2093 -4.4208 22 1 11.1751 -5.2999 -3.0381 23 6 8.0204 -1.2081 -2.3052 24 8 6.9791 -1.7048 -2.6794 25 6 7.6162 0.8841 -1.0142 26 6 6.0935 0.7742 -1.1344 27 7 3.5373 -1.1564 -0.0074 28 6 2.2150 -1.1916 -0.0015 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5138 32 1 1.6935 2.1372 0.0007 33 1 5.8392 -1.8579 -0.9443 34 1 5.6566 -1.9288 0.8249 35 1 8.0119 -2.3483 0.1238 36 1 7.8719 -0.8727 1.1104 37 1 10.1314 -1.2704 -0.2376 38 1 10.0393 0.5192 -0.3521 39 1 11.1651 -1.0547 -2.3462 40 1 10.3660 0.5091 -2.6827 41 1 10.0792 -1.2419 -4.8972 42 1 8.3797 -1.7703 -4.8662 43 1 10.7358 -3.2810 -3.6484 44 1 9.0364 -3.8094 -3.6174 45 1 10.7916 -6.6500 -6.9284 46 1 7.8712 1.4128 -0.0959 47 1 8.0102 1.4310 -1.8709 48 1 5.8381 0.2723 -2.0676 49 1 5.6551 1.7721 -1.1267 50 1 1.6934 -2.1373 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274711666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:25 Heat of formation + Delta-G solvation = 4.951163 kcal Electronic energy + Delta-G solvation = -30845.230425 eV Core-core repulsion = 26871.628484 eV Total energy + Delta-G solvation = -3973.601941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.60870 -41.85729 -39.12136 -37.55172 -36.30345 -35.04170 -34.81813 -33.82296 -32.36634 -32.04495 -30.14462 -28.00810 -27.16422 -26.09679 -25.89610 -24.05794 -23.55903 -23.17378 -22.26579 -21.64717 -19.71995 -19.07603 -18.97784 -18.65784 -17.33389 -17.08421 -16.61387 -16.37924 -16.18160 -15.81999 -15.68433 -15.44514 -15.22438 -14.95509 -14.78626 -14.67004 -14.53576 -14.44998 -14.35951 -14.04089 -13.71867 -13.52527 -13.30053 -13.19220 -13.13997 -13.05662 -12.92488 -12.47574 -12.29827 -12.19468 -12.05137 -11.97159 -11.89346 -11.80093 -11.55722 -11.46215 -11.38547 -11.07954 -10.84935 -10.34691 -10.13970 -9.57828 -9.27813 -8.36846 -6.41908 -0.08945 0.13786 1.28835 1.30951 1.41948 1.60706 2.09489 2.18506 2.28978 2.73639 2.98101 3.18414 3.25609 3.44244 3.58875 3.66552 3.71000 3.95779 3.97911 3.99029 4.05602 4.12621 4.24974 4.29049 4.35295 4.44030 4.51378 4.56453 4.65424 4.66678 4.71681 4.75607 4.79997 4.85275 4.88015 4.91211 5.03424 5.06079 5.07380 5.11610 5.12240 5.22156 5.23996 5.29177 5.40653 5.47173 5.61453 5.70762 5.74878 6.16826 6.22323 6.30681 6.64344 7.12258 7.21478 7.25993 8.79487 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.002758 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.847439 B =10149.647335 C =11169.089687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.217 4.217 3 C 0.160 3.840 4 N -0.546 5.546 5 C 0.465 3.535 6 N -0.452 5.452 7 C 0.065 3.935 8 C -0.090 4.090 9 C -0.090 4.090 10 C -0.109 4.109 11 C 0.090 3.910 12 N -0.620 5.620 13 C 0.148 3.852 14 C -0.012 4.012 15 C -0.533 4.533 16 H 0.038 0.962 17 C 0.010 3.990 18 N -0.945 5.945 19 Si 0.948 3.052 20 H -0.279 1.279 21 H -0.275 1.275 22 H -0.245 1.245 23 C 0.505 3.495 24 O -0.577 6.577 25 C -0.084 4.084 26 C 0.067 3.933 27 N -0.575 5.575 28 C 0.151 3.849 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.203 0.797 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.031 0.969 44 H -0.005 1.005 45 H 0.268 0.732 46 H 0.119 0.881 47 H 0.089 0.911 48 H 0.015 0.985 49 H 0.098 0.902 50 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 18.639 21.867 31.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.223 4.223 3 C -0.007 4.007 4 N -0.263 5.263 5 C 0.109 3.891 6 N -0.172 5.172 7 C -0.062 4.062 8 C -0.128 4.128 9 C -0.094 4.094 10 C -0.146 4.146 11 C -0.032 4.032 12 N -0.352 5.352 13 C 0.026 3.974 14 C -0.050 4.050 15 C -0.572 4.572 16 H 0.057 0.943 17 C -0.188 4.188 18 N -0.585 5.585 19 Si 0.772 3.228 20 H -0.204 1.204 21 H -0.200 1.200 22 H -0.168 1.168 23 C 0.294 3.706 24 O -0.457 6.457 25 C -0.122 4.122 26 C -0.059 4.059 27 N -0.295 5.295 28 C -0.015 4.015 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.220 0.780 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.014 0.986 45 H 0.077 0.923 46 H 0.137 0.863 47 H 0.107 0.893 48 H 0.034 0.966 49 H 0.116 0.884 50 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.334 18.438 21.898 30.789 hybrid contribution -1.174 -1.697 -1.080 2.329 sum -12.508 16.742 20.818 29.498 Atomic orbital electron populations 1.20646 0.86297 1.04711 1.03509 1.21908 1.00915 0.94446 1.04992 1.23686 0.87930 1.00076 0.88977 1.68012 1.11613 1.28477 1.18230 1.21273 0.91573 0.84911 0.91348 1.58521 1.00794 1.16304 1.41536 1.22081 0.95642 0.86339 1.02135 1.21498 0.92577 1.00202 0.98529 1.21137 0.99238 0.97149 0.91836 1.22773 0.90120 1.06572 0.95130 1.22484 0.90518 0.97968 0.92217 1.48719 1.12875 1.55022 1.18597 1.21118 1.00508 0.93596 0.82211 1.19717 0.96048 0.93827 0.95418 1.21281 1.45714 0.97579 0.92618 0.94339 1.25932 0.94530 0.98983 0.99336 1.70043 1.48699 1.14764 1.24997 0.85692 0.78313 0.78721 0.80108 1.20447 1.19993 1.16833 1.21491 0.82704 0.78654 0.87754 1.90642 1.30604 1.49213 1.75228 1.21508 0.91403 0.93629 1.05625 1.22200 0.97343 0.97832 0.88491 1.68410 1.12221 1.29999 1.18823 1.23549 0.88246 1.00201 0.89480 0.90201 0.90052 0.89271 0.78015 0.93969 0.90311 0.91224 0.87032 0.89020 0.84743 0.89757 0.88619 0.89315 0.93638 0.95081 0.98627 0.92267 0.86259 0.89268 0.96649 0.88420 0.79602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.06 71.24 0.72 0.01 16 2 C -0.22 -3.52 5.91 -19.69 -0.12 -3.64 16 3 C 0.16 2.89 11.00 84.71 0.93 3.82 16 4 N -0.55 -14.00 9.64 -197.99 -1.91 -15.91 16 5 C 0.46 13.70 7.18 261.49 1.88 15.57 16 6 N -0.45 -12.65 4.70 -708.53 -3.33 -15.98 16 7 C 0.07 1.93 4.41 86.36 0.38 2.31 16 8 C -0.09 -2.08 4.78 30.49 0.15 -1.94 16 9 C -0.09 -2.06 0.55 -52.82 -0.03 -2.09 16 10 C -0.11 -1.67 6.21 31.51 0.20 -1.47 16 11 C 0.09 1.88 7.35 86.86 0.64 2.52 16 12 N -0.62 -20.67 2.94 -818.04 -2.40 -23.07 16 13 C 0.15 6.15 5.88 86.38 0.51 6.66 16 14 C -0.01 -0.58 4.37 29.85 0.13 -0.45 16 15 C -0.53 -31.75 9.66 25.60 0.25 -31.50 16 16 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 17 C 0.01 0.59 5.47 84.65 0.46 1.06 16 18 N -0.94 -60.32 13.96 21.45 0.30 -60.02 16 19 Si 0.95 46.01 27.47 68.60 1.88 47.89 16 20 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.24 -10.92 6.54 99.48 0.65 -10.27 16 23 C 0.51 17.67 6.32 87.72 0.55 18.22 16 24 O -0.58 -26.12 13.81 -3.06 -0.04 -26.16 16 25 C -0.08 -1.61 4.76 30.49 0.15 -1.47 16 26 C 0.07 1.78 5.11 86.36 0.44 2.23 16 27 N -0.58 -16.97 8.67 -197.98 -1.72 -18.69 16 28 C 0.15 3.25 11.00 84.71 0.93 4.18 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.47 8.10 -2.38 -0.02 0.45 16 31 H 0.09 0.37 8.10 -2.38 -0.02 0.35 16 32 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.04 1.63 5.76 -2.39 -0.01 1.61 16 34 H 0.08 2.32 7.67 -2.39 -0.02 2.30 16 35 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 1.34 7.89 -2.39 -0.02 1.32 16 38 H 0.13 0.99 7.87 -2.39 -0.02 0.97 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.05 2.13 7.92 -2.39 -0.02 2.11 16 43 H 0.03 1.44 7.20 -2.39 -0.02 1.43 16 44 H 0.00 -0.25 7.57 -2.39 -0.02 -0.27 16 45 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 46 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.02 0.53 6.65 -2.39 -0.02 0.51 16 49 H 0.10 2.40 7.53 -2.39 -0.02 2.38 16 50 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -85.62 391.78 1.82 -83.81 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.87 Total: 14.11 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 8.16 Total: 14.01 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -9.06 Total: -133.65 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.04 Total: -26.16 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.89 kcal Total: -85.62 1.82 -83.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274711666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.757 kcal (2) G-P(sol) polarization free energy of solvation -85.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds