Wall clock time and date at job start Wed Apr 1 2020 04:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38604 * 120.72393 * 2 1 4 4 N 1.32268 * 119.19703 * 179.97438 * 3 2 1 5 5 C 1.32493 * 120.74028 * 359.97438 * 4 3 2 6 6 N 1.38410 * 119.21650 * 179.97438 * 5 4 3 7 7 C 1.46811 * 111.00158 * 180.02562 * 6 5 4 8 8 C 1.53261 * 109.44611 * 170.80203 * 7 6 5 9 9 C 1.53216 * 108.61965 * 55.59369 * 8 7 6 10 10 C 1.52735 * 117.84176 * 162.99118 * 9 8 7 11 11 C 1.52767 * 117.79294 * 93.99332 * 9 8 7 12 12 H 1.08998 * 117.50666 * 215.29560 * 11 9 8 13 13 C 1.50700 * 117.53140 * 0.36428 * 11 9 8 14 14 O 1.21291 * 119.99513 * 66.47282 * 13 11 9 15 15 N 1.34769 * 120.00145 * 246.46695 * 13 11 9 16 16 C 1.46511 * 119.99895 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.46813 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.46469 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00488 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99557 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00318 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00216 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46819 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47050 * 119.99832 * 22 20 18 25 25 H 1.48498 * 109.47360 * 240.00515 * 22 20 18 26 26 C 1.53220 * 114.74155 * 308.58367 * 9 8 7 27 27 C 1.46809 * 110.99631 * 55.30685 * 6 5 4 28 28 N 1.32492 * 121.56686 * 0.28360 * 5 4 3 29 29 C 1.32276 * 120.73960 * 359.43135 * 28 5 4 30 30 H 1.08997 * 109.47371 * 89.99380 * 1 2 3 31 31 H 1.08998 * 109.47400 * 210.00157 * 1 2 3 32 32 H 1.09007 * 109.46671 * 329.99835 * 1 2 3 33 33 H 1.08001 * 120.40024 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47223 * 50.80485 * 7 6 5 35 35 H 1.09006 * 109.47594 * 290.79626 * 7 6 5 36 36 H 1.09000 * 109.61142 * 295.84895 * 8 7 6 37 37 H 1.09001 * 109.75399 * 175.42095 * 8 7 6 38 38 H 1.09000 * 117.50168 * 144.78705 * 10 9 8 39 39 H 1.08990 * 117.53281 * 359.72797 * 10 9 8 40 40 H 0.96998 * 120.00560 * 0.02562 * 15 13 11 41 41 H 1.08998 * 109.47324 * 300.00867 * 16 15 13 42 42 H 1.08997 * 109.46609 * 60.00783 * 16 15 13 43 43 H 1.08996 * 109.46865 * 299.99832 * 17 16 15 44 44 H 1.08994 * 109.46767 * 60.00456 * 17 16 15 45 45 H 0.96999 * 120.00706 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.61085 * 171.15671 * 26 9 8 47 47 H 1.08998 * 109.61088 * 291.67461 * 26 9 8 48 48 H 1.09002 * 109.47720 * 309.18763 * 27 6 5 49 49 H 1.09004 * 109.47962 * 69.20757 * 27 6 5 50 50 H 1.08002 * 120.40605 * 180.30010 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2152 1.1915 0.0000 4 7 3.5374 1.1562 0.0005 5 6 4.1840 -0.0002 0.0015 6 7 5.5681 -0.0002 0.0015 7 6 6.0942 -1.3708 0.0021 8 6 7.6089 -1.3361 -0.2289 9 6 8.2457 -0.4370 0.8358 10 6 9.7516 -0.5553 1.0615 11 6 8.7750 -1.1015 2.1055 12 1 8.6771 -0.5501 3.0406 13 6 8.6401 -2.5984 2.2164 14 8 9.2643 -3.3205 1.4680 15 7 7.8261 -3.1345 3.1471 16 6 7.6947 -4.5898 3.2545 17 6 6.7171 -4.9317 4.3807 18 6 6.5824 -6.4286 4.4915 19 1 7.1387 -7.0717 3.8257 20 6 5.7489 -6.9771 5.4430 21 7 5.0710 -6.1941 6.2536 22 14 5.5812 -8.8325 5.5801 23 1 6.4421 -9.4839 4.5603 24 1 6.0034 -9.2689 6.9353 25 1 4.1656 -9.2198 5.3538 26 6 7.6090 0.9504 0.9678 27 6 6.0942 0.7809 1.1277 28 7 3.5373 -1.1565 -0.0035 29 6 2.2150 -1.1916 0.0015 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6936 2.1372 0.0004 34 1 5.6181 -1.9432 -0.7941 35 1 5.8838 -1.8405 0.9631 36 1 7.8187 -0.9343 -1.2202 37 1 8.0170 -2.3436 -0.1488 38 1 10.2964 0.3556 1.3100 39 1 10.2967 -1.2784 0.4551 40 1 7.3267 -2.5571 3.7454 41 1 7.3190 -4.9911 2.3133 42 1 8.6687 -5.0273 3.4731 43 1 7.0925 -4.5304 5.3220 44 1 5.7432 -4.4941 4.1617 45 1 4.4849 -6.5799 6.9233 46 1 8.0149 1.4574 1.8431 47 1 7.8188 1.5359 0.0727 48 1 5.6183 1.7614 1.1438 49 1 5.8839 0.2594 2.0615 50 1 1.6933 -2.1373 0.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274712617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:33 Heat of formation + Delta-G solvation = 37.256096 kcal Electronic energy + Delta-G solvation = -30173.137735 eV Core-core repulsion = 26200.936641 eV Total energy + Delta-G solvation = -3972.201094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.50018 -40.29635 -38.48457 -36.48480 -34.77974 -33.94765 -33.42415 -32.82793 -31.20825 -30.26681 -29.59959 -26.76575 -25.45097 -25.15986 -23.63194 -23.11643 -22.91058 -21.63049 -20.92782 -20.08426 -18.83431 -17.97871 -17.79839 -16.87357 -16.30015 -15.78123 -15.43944 -15.07103 -14.98398 -14.72981 -14.59573 -14.53886 -14.42535 -14.07064 -13.75514 -13.66469 -13.51903 -12.96438 -12.91163 -12.81264 -12.68376 -12.40833 -12.30141 -11.88864 -11.82188 -11.40400 -11.20449 -11.13663 -11.05215 -10.98223 -10.72883 -10.62978 -10.35214 -10.23019 -10.15107 -9.85030 -9.72476 -9.43143 -9.27197 -9.14654 -8.53930 -8.42928 -8.34282 -6.10190 -4.12888 0.74985 0.95102 2.77565 2.97873 3.27488 3.34944 3.39957 3.56540 3.62204 3.83116 3.99843 4.38900 4.40483 4.45710 4.52784 4.60093 4.63539 4.66182 4.73421 4.78200 5.00591 5.12616 5.25083 5.25750 5.26986 5.31088 5.33849 5.40277 5.42707 5.55615 5.64739 5.67948 5.70788 5.75338 5.79081 5.92348 6.01282 6.08217 6.17169 6.20816 6.34866 6.35667 6.55512 6.60121 6.73753 6.93585 7.08784 7.51330 7.61064 7.88147 7.99578 8.03587 8.27406 8.67667 8.93388 9.52018 11.01450 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.003265 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.473715 B = 8572.628044 C =11590.766915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.231 4.231 3 C 0.172 3.828 4 N -0.531 5.531 5 C 0.489 3.511 6 N -0.458 5.458 7 C 0.073 3.927 8 C -0.091 4.091 9 C -0.099 4.099 10 C -0.136 4.136 11 C -0.186 4.186 12 H 0.119 0.881 13 C 0.537 3.463 14 O -0.550 6.550 15 N -0.718 5.718 16 C 0.123 3.877 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.077 4.077 27 C 0.069 3.931 28 N -0.543 5.543 29 C 0.177 3.823 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.167 0.833 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.396 0.604 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.047 0.953 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 19.640 -12.303 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.237 4.237 3 C 0.004 3.996 4 N -0.248 5.248 5 C 0.133 3.867 6 N -0.178 5.178 7 C -0.053 4.053 8 C -0.129 4.129 9 C -0.100 4.100 10 C -0.173 4.173 11 C -0.207 4.207 12 H 0.137 0.863 13 C 0.322 3.678 14 O -0.429 6.429 15 N -0.367 5.367 16 C 0.000 4.000 17 C -0.024 4.024 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.115 4.115 27 C -0.057 4.057 28 N -0.262 5.262 29 C 0.009 3.991 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.184 0.816 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.229 0.771 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.066 0.934 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.751 19.299 -13.096 23.485 hybrid contribution -1.655 -1.089 1.197 2.315 sum -4.406 18.209 -11.899 22.194 Atomic orbital electron populations 1.20561 0.89251 1.03325 1.02503 1.21525 0.99054 0.95513 1.07607 1.22965 0.88655 0.98168 0.89853 1.67984 1.10044 1.28916 1.17877 1.21069 0.91046 0.84419 0.90125 1.58225 1.00569 1.16780 1.42196 1.22060 0.94550 0.85547 1.03161 1.21428 0.93239 1.00393 0.97794 1.21503 0.96442 0.96296 0.95738 1.23001 0.91518 1.02405 1.00363 1.22488 1.08457 0.93911 0.95852 0.86305 1.19520 0.79286 0.88468 0.80488 1.90652 1.46499 1.62397 1.43387 1.46268 1.45122 1.09763 1.35499 1.21717 1.00676 0.76683 1.00887 1.19313 0.93560 0.97329 0.92212 1.21088 1.26110 0.91240 1.17423 0.92205 1.24994 0.95423 0.98363 0.95495 1.69965 1.28272 1.34842 1.20255 0.86468 0.77926 0.85259 0.78001 1.19549 1.20934 1.20924 1.21282 0.92909 0.94222 1.03053 1.22206 0.95721 0.98322 0.89464 1.68441 1.10559 1.29257 1.17900 1.23057 0.88809 0.98366 0.88854 0.91041 0.91057 0.91237 0.81581 0.89137 0.92532 0.90393 0.88996 0.88084 0.87306 0.77055 0.92593 0.92594 0.96041 0.96048 0.92930 0.90327 0.89808 0.88725 0.93447 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.06 36.01 0.36 -0.18 16 2 C -0.23 -2.05 5.91 -104.35 -0.62 -2.67 16 3 C 0.17 1.62 11.00 -17.23 -0.19 1.43 16 4 N -0.53 -6.55 9.58 -13.93 -0.13 -6.68 16 5 C 0.49 6.65 7.18 -322.80 -2.32 4.34 16 6 N -0.46 -5.88 4.64 -175.21 -0.81 -6.69 16 7 C 0.07 1.00 4.71 -3.74 -0.02 0.98 16 8 C -0.09 -1.16 5.52 -26.48 -0.15 -1.30 16 9 C -0.10 -1.10 2.02 -154.54 -0.31 -1.41 16 10 C -0.14 -1.48 9.51 -26.85 -0.26 -1.74 16 11 C -0.19 -2.32 5.88 -91.87 -0.54 -2.87 16 12 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 13 C 0.54 9.08 6.57 -10.99 -0.07 9.01 16 14 O -0.55 -11.11 14.98 5.55 0.08 -11.03 16 15 N -0.72 -12.76 5.56 -60.29 -0.33 -13.09 16 16 C 0.12 2.64 5.61 -4.03 -0.02 2.62 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 22 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C -0.08 -0.71 5.87 -26.48 -0.16 -0.86 16 27 C 0.07 0.75 5.38 -3.74 -0.02 0.73 16 28 N -0.54 -7.51 8.62 -13.93 -0.12 -7.63 16 29 C 0.18 1.93 11.00 -17.22 -0.19 1.74 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 32 H 0.07 0.30 8.10 -51.92 -0.42 -0.12 16 33 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.09 1.29 7.52 -51.93 -0.39 0.90 16 35 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.39 5.97 -51.93 -0.31 1.08 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.11 1.36 7.67 -51.93 -0.40 0.96 16 40 H 0.40 6.28 8.47 -40.82 -0.35 5.94 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 1.00 7.44 -51.93 -0.39 0.61 16 49 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 50 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 406.44 15.07 6.13 6.13 Total: -1.00 -33.57 406.44 -12.65 -46.23 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.13 Total: 5.10 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -5.05 Total: -3.26 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.67 Total: -59.59 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.57 -12.65 -46.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274712617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.482 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds