Wall clock time and date at job start Wed Apr 1 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38604 * 120.72393 * 2 1 4 4 N 1.32268 * 119.19703 * 179.97438 * 3 2 1 5 5 C 1.32493 * 120.74028 * 359.97438 * 4 3 2 6 6 N 1.38410 * 119.21650 * 179.97438 * 5 4 3 7 7 C 1.46811 * 111.00158 * 180.02562 * 6 5 4 8 8 C 1.53261 * 109.44611 * 170.80203 * 7 6 5 9 9 C 1.53216 * 108.61965 * 55.59369 * 8 7 6 10 10 C 1.52735 * 117.84176 * 162.99118 * 9 8 7 11 11 C 1.52767 * 117.79294 * 93.99332 * 9 8 7 12 12 H 1.08998 * 117.50666 * 215.29560 * 11 9 8 13 13 C 1.50700 * 117.53140 * 0.36428 * 11 9 8 14 14 O 1.21291 * 119.99513 * 66.47282 * 13 11 9 15 15 N 1.34769 * 120.00145 * 246.46695 * 13 11 9 16 16 C 1.46511 * 119.99895 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.46813 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.46469 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00488 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99557 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00318 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00216 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46819 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47050 * 119.99832 * 22 20 18 25 25 H 1.48498 * 109.47360 * 240.00515 * 22 20 18 26 26 C 1.53220 * 114.74155 * 308.58367 * 9 8 7 27 27 C 1.46809 * 110.99631 * 55.30685 * 6 5 4 28 28 N 1.32492 * 121.56686 * 0.28360 * 5 4 3 29 29 C 1.32276 * 120.73960 * 359.43135 * 28 5 4 30 30 H 1.08997 * 109.47371 * 89.99380 * 1 2 3 31 31 H 1.08998 * 109.47400 * 210.00157 * 1 2 3 32 32 H 1.09007 * 109.46671 * 329.99835 * 1 2 3 33 33 H 1.08001 * 120.40024 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47223 * 50.80485 * 7 6 5 35 35 H 1.09006 * 109.47594 * 290.79626 * 7 6 5 36 36 H 1.09000 * 109.61142 * 295.84895 * 8 7 6 37 37 H 1.09001 * 109.75399 * 175.42095 * 8 7 6 38 38 H 1.09000 * 117.50168 * 144.78705 * 10 9 8 39 39 H 1.08990 * 117.53281 * 359.72797 * 10 9 8 40 40 H 0.96998 * 120.00560 * 0.02562 * 15 13 11 41 41 H 1.08998 * 109.47324 * 300.00867 * 16 15 13 42 42 H 1.08997 * 109.46609 * 60.00783 * 16 15 13 43 43 H 1.08996 * 109.46865 * 299.99832 * 17 16 15 44 44 H 1.08994 * 109.46767 * 60.00456 * 17 16 15 45 45 H 0.96999 * 120.00706 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.61085 * 171.15671 * 26 9 8 47 47 H 1.08998 * 109.61088 * 291.67461 * 26 9 8 48 48 H 1.09002 * 109.47720 * 309.18763 * 27 6 5 49 49 H 1.09004 * 109.47962 * 69.20757 * 27 6 5 50 50 H 1.08002 * 120.40605 * 180.30010 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2152 1.1915 0.0000 4 7 3.5374 1.1562 0.0005 5 6 4.1840 -0.0002 0.0015 6 7 5.5681 -0.0002 0.0015 7 6 6.0942 -1.3708 0.0021 8 6 7.6089 -1.3361 -0.2289 9 6 8.2457 -0.4370 0.8358 10 6 9.7516 -0.5553 1.0615 11 6 8.7750 -1.1015 2.1055 12 1 8.6771 -0.5501 3.0406 13 6 8.6401 -2.5984 2.2164 14 8 9.2643 -3.3205 1.4680 15 7 7.8261 -3.1345 3.1471 16 6 7.6947 -4.5898 3.2545 17 6 6.7171 -4.9317 4.3807 18 6 6.5824 -6.4286 4.4915 19 1 7.1387 -7.0717 3.8257 20 6 5.7489 -6.9771 5.4430 21 7 5.0710 -6.1941 6.2536 22 14 5.5812 -8.8325 5.5801 23 1 6.4421 -9.4839 4.5603 24 1 6.0034 -9.2689 6.9353 25 1 4.1656 -9.2198 5.3538 26 6 7.6090 0.9504 0.9678 27 6 6.0942 0.7809 1.1277 28 7 3.5373 -1.1565 -0.0035 29 6 2.2150 -1.1916 0.0015 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6936 2.1372 0.0004 34 1 5.6181 -1.9432 -0.7941 35 1 5.8838 -1.8405 0.9631 36 1 7.8187 -0.9343 -1.2202 37 1 8.0170 -2.3436 -0.1488 38 1 10.2964 0.3556 1.3100 39 1 10.2967 -1.2784 0.4551 40 1 7.3267 -2.5571 3.7454 41 1 7.3190 -4.9911 2.3133 42 1 8.6687 -5.0273 3.4731 43 1 7.0925 -4.5304 5.3220 44 1 5.7432 -4.4941 4.1617 45 1 4.4849 -6.5799 6.9233 46 1 8.0149 1.4574 1.8431 47 1 7.8188 1.5359 0.0727 48 1 5.6183 1.7614 1.1438 49 1 5.8839 0.2594 2.0615 50 1 1.6933 -2.1373 0.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274712617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:31 Heat of formation + Delta-G solvation = 17.209254 kcal Electronic energy + Delta-G solvation = -30174.007032 eV Core-core repulsion = 26200.936641 eV Total energy + Delta-G solvation = -3973.070390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.38070 -41.42175 -39.66294 -37.53785 -36.48938 -34.83601 -34.81717 -34.18747 -32.14267 -31.74375 -30.91941 -27.59751 -27.11172 -26.00868 -25.00328 -24.04394 -23.87190 -22.77161 -22.50780 -21.34875 -19.89501 -18.91743 -18.73260 -18.57706 -17.91517 -16.85158 -16.58169 -16.52211 -16.43391 -15.98719 -15.78047 -15.45796 -15.39632 -15.19534 -15.01783 -14.53092 -14.46182 -14.31431 -14.20730 -13.92419 -13.62855 -13.36464 -13.25165 -13.13943 -13.01680 -12.85124 -12.74979 -12.55064 -12.34995 -12.25426 -11.97504 -11.88286 -11.76436 -11.63649 -11.47534 -11.13066 -11.07619 -10.87523 -10.64679 -10.57529 -10.13755 -10.01849 -9.30993 -8.27640 -6.38615 -0.07780 0.13551 1.38313 1.38969 1.50054 1.52534 2.08936 2.21451 2.42254 2.71315 2.82107 3.06895 3.17577 3.53437 3.53677 3.70090 3.71996 3.78309 3.81578 3.97799 4.02581 4.03420 4.13690 4.21200 4.39450 4.43388 4.45663 4.46466 4.49153 4.69268 4.72113 4.79155 4.83404 4.85915 4.86753 4.93631 4.95938 5.07996 5.09050 5.14384 5.20766 5.24320 5.28755 5.41530 5.46177 5.52057 5.61799 5.72201 5.74361 6.11970 6.21345 6.60880 6.74413 7.11757 7.27014 7.31000 8.84526 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.003265 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.473715 B = 8572.628044 C =11590.766915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.216 4.216 3 C 0.164 3.836 4 N -0.542 5.542 5 C 0.465 3.535 6 N -0.459 5.459 7 C 0.088 3.912 8 C -0.087 4.087 9 C -0.092 4.092 10 C -0.119 4.119 11 C -0.196 4.196 12 H 0.147 0.853 13 C 0.534 3.466 14 O -0.586 6.586 15 N -0.717 5.717 16 C 0.143 3.857 17 C 0.026 3.974 18 C -0.547 4.547 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.066 4.066 27 C 0.068 3.932 28 N -0.578 5.578 29 C 0.152 3.848 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.205 0.795 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.406 0.594 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.008 0.992 44 H 0.003 0.997 45 H 0.266 0.734 46 H 0.108 0.892 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.033 0.967 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 21.712 -12.384 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.222 4.222 3 C -0.003 4.003 4 N -0.260 5.260 5 C 0.109 3.891 6 N -0.179 5.179 7 C -0.040 4.040 8 C -0.125 4.125 9 C -0.093 4.093 10 C -0.156 4.156 11 C -0.216 4.216 12 H 0.165 0.835 13 C 0.323 3.677 14 O -0.468 6.468 15 N -0.366 5.366 16 C 0.019 3.981 17 C -0.011 4.011 18 C -0.585 4.585 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.201 1.201 26 C -0.103 4.103 27 C -0.057 4.057 28 N -0.298 5.298 29 C -0.014 4.014 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.221 0.779 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.108 0.892 40 H 0.241 0.759 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.021 0.979 45 H 0.075 0.925 46 H 0.126 0.874 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.052 0.948 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.339 21.400 -13.176 25.352 hybrid contribution -1.609 -1.718 1.180 2.633 sum -4.948 19.682 -11.996 23.575 Atomic orbital electron populations 1.20650 0.86492 1.04475 1.03680 1.21886 1.00830 0.94461 1.04990 1.23677 0.87932 0.99927 0.88743 1.68018 1.11463 1.28221 1.18259 1.21245 0.91429 0.84911 0.91533 1.58333 1.00718 1.15825 1.43009 1.21772 0.95081 0.86250 1.00852 1.21324 0.92513 0.99367 0.99273 1.21549 0.97041 0.96785 0.93884 1.23116 0.91124 1.02993 0.98394 1.22511 1.10721 0.90479 0.97929 0.83504 1.20303 0.77832 0.90535 0.79024 1.90631 1.47769 1.63906 1.44468 1.46119 1.45892 1.08172 1.36442 1.21182 0.98940 0.79237 0.98707 1.19095 0.93275 0.96146 0.92622 1.21477 1.26573 0.92669 1.17813 0.92406 1.25880 0.94839 1.03437 0.94938 1.70067 1.28753 1.37003 1.20772 0.85387 0.78191 0.79138 0.78294 1.18992 1.20018 1.20087 1.21318 0.91127 0.92812 1.05045 1.22297 0.97124 0.97999 0.88319 1.68395 1.12200 1.30048 1.19110 1.23489 0.88304 1.00140 0.89480 0.89650 0.90658 0.89355 0.77869 0.90846 0.95426 0.89283 0.91951 0.84315 0.89161 0.75863 0.94040 0.93533 0.97387 0.97897 0.92498 0.87370 0.88503 0.88022 0.94836 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.06 71.24 0.72 -0.09 16 2 C -0.22 -3.55 5.91 -19.69 -0.12 -3.66 16 3 C 0.16 2.82 11.00 84.71 0.93 3.75 16 4 N -0.54 -12.98 9.58 -197.99 -1.90 -14.87 16 5 C 0.46 12.92 7.18 261.48 1.88 14.79 16 6 N -0.46 -11.94 4.64 -708.23 -3.29 -15.23 16 7 C 0.09 2.55 4.71 86.41 0.41 2.95 16 8 C -0.09 -2.27 5.52 30.75 0.17 -2.10 16 9 C -0.09 -1.92 2.02 -52.20 -0.11 -2.02 16 10 C -0.12 -2.33 9.51 30.52 0.29 -2.04 16 11 C -0.20 -4.64 5.88 -11.60 -0.07 -4.71 16 12 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 13 C 0.53 18.51 6.57 87.66 0.58 19.08 16 14 O -0.59 -24.59 14.98 -3.06 -0.05 -24.63 16 15 N -0.72 -26.44 5.56 -463.04 -2.57 -29.02 16 16 C 0.14 6.48 5.61 86.38 0.48 6.96 16 17 C 0.03 1.36 5.09 29.85 0.15 1.52 16 18 C -0.55 -31.37 9.11 25.60 0.23 -31.13 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.01 0.45 5.46 84.65 0.46 0.91 16 21 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 22 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 C -0.07 -1.02 5.87 30.75 0.18 -0.84 16 27 C 0.07 1.43 5.38 86.41 0.47 1.89 16 28 N -0.58 -16.81 8.62 -197.98 -1.71 -18.52 16 29 C 0.15 3.37 11.00 84.71 0.93 4.30 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.62 8.10 -2.39 -0.02 0.60 16 32 H 0.09 0.46 8.10 -2.38 -0.02 0.44 16 33 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.07 2.31 7.52 -2.39 -0.02 2.29 16 35 H 0.03 0.93 8.12 -2.38 -0.02 0.92 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.01 5.97 -2.39 -0.01 2.00 16 38 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 2.17 7.67 -2.39 -0.02 2.15 16 40 H 0.41 13.29 8.47 -92.71 -0.79 12.50 16 41 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.11 1.12 8.08 -2.39 -0.02 1.10 16 47 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.10 1.99 7.44 -2.39 -0.02 1.97 16 49 H 0.03 0.78 8.12 -2.38 -0.02 0.76 16 50 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -76.05 406.44 0.55 -75.50 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.16 Total: 25.74 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 7.59 Total: 9.55 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -9.18 Total: -132.43 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -76.05 0.55 -75.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274712617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.711 kcal (2) G-P(sol) polarization free energy of solvation -76.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds