Wall clock time and date at job start Wed Apr 1 2020 03:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.12981 * 2 1 4 4 C 1.39874 * 107.91974 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.89589 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47279 * 94.99995 * 5 4 3 7 7 C 1.48027 * 111.46671 * 58.77923 * 6 5 4 8 8 C 1.54936 * 103.45604 * 159.40577 * 7 6 5 9 9 C 1.54557 * 102.94599 * 322.92225 * 8 7 6 10 10 H 1.08992 * 117.57794 * 242.98190 * 9 8 7 11 11 C 1.52940 * 118.19829 * 85.57163 * 9 8 7 12 12 C 1.47944 * 111.00007 * 176.77414 * 6 5 4 13 13 C 1.50699 * 117.37360 * 354.64581 * 12 6 5 14 14 O 1.21280 * 120.00344 * 118.25499 * 13 12 6 15 15 N 1.34780 * 119.99807 * 298.25821 * 13 12 6 16 16 C 1.47581 * 134.49117 * 174.34074 * 15 13 12 17 17 C 1.53945 * 86.11352 * 155.35485 * 16 15 13 18 18 C 1.50712 * 113.74092 * 137.95286 * 17 16 15 19 19 H 1.07996 * 119.99876 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99648 * 179.97438 * 18 17 16 21 21 N 1.31505 * 120.00242 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99693 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46970 * 59.99901 * 22 20 18 24 24 H 1.48506 * 109.47101 * 300.00342 * 22 20 18 25 25 H 1.48495 * 109.47283 * 180.02562 * 22 20 18 26 26 C 1.47581 * 134.49027 * 354.32869 * 15 13 12 27 27 N 1.30835 * 108.20045 * 0.26084 * 4 3 2 28 28 N 1.34946 * 126.12345 * 179.97438 * 2 1 3 29 29 C 1.46502 * 126.03941 * 0.03361 * 28 2 1 30 30 H 1.09000 * 109.46830 * 90.02109 * 1 2 3 31 31 H 1.08990 * 109.47372 * 210.02645 * 1 2 3 32 32 H 1.09004 * 109.47015 * 330.02968 * 1 2 3 33 33 H 1.08003 * 126.03821 * 359.94095 * 3 2 1 34 34 H 1.08999 * 109.47371 * 334.99760 * 5 4 3 35 35 H 1.09004 * 109.46981 * 214.99935 * 5 4 3 36 36 H 1.09004 * 110.22551 * 41.05489 * 7 6 5 37 37 H 1.08992 * 110.88981 * 278.07909 * 7 6 5 38 38 H 1.09007 * 110.72044 * 204.55446 * 8 7 6 39 39 H 1.09003 * 110.71915 * 81.29073 * 8 7 6 40 40 H 1.09000 * 117.45545 * 160.65173 * 11 9 8 41 41 H 1.08999 * 117.45325 * 15.87472 * 11 9 8 42 42 H 1.08992 * 113.76969 * 41.05121 * 16 15 13 43 43 H 1.09006 * 113.76559 * 269.65170 * 16 15 13 44 44 H 1.09004 * 113.74328 * 269.14618 * 17 16 15 45 45 H 0.97007 * 120.00246 * 0.02562 * 21 20 18 46 46 H 1.08999 * 113.76677 * 90.34482 * 26 15 13 47 47 H 1.08999 * 113.77253 * 318.94394 * 26 15 13 48 48 H 1.09005 * 109.47034 * 90.00033 * 29 28 2 49 49 H 1.08995 * 109.47405 * 210.00229 * 29 28 2 50 50 H 1.08996 * 109.47323 * 330.00667 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 0.0006 5 6 4.8543 1.5393 0.0013 6 7 5.3211 1.7284 1.3814 7 6 5.6481 0.4359 2.0246 8 6 6.5858 0.8401 3.1898 9 6 7.4155 1.9939 2.5823 10 1 8.4912 1.8460 2.4869 11 6 6.8362 3.4081 2.6384 12 6 6.5650 2.5287 1.4153 13 6 7.1916 2.8918 0.0938 14 8 7.3075 4.0569 -0.2227 15 7 7.6232 1.9218 -0.7365 16 6 8.1703 1.9013 -2.1070 17 6 8.8423 0.5754 -1.7065 18 6 8.7741 -0.4861 -2.7742 19 1 8.2847 -0.2763 -3.7138 20 6 9.3365 -1.7251 -2.5513 21 7 9.9329 -1.9804 -1.4074 22 14 9.2514 -3.0410 -3.8743 23 1 9.9312 -2.5539 -5.1015 24 1 7.8302 -3.3423 -4.1822 25 1 9.9246 -4.2732 -3.3910 26 6 7.7387 0.4537 -0.6401 27 7 3.6333 -0.6525 -0.0047 28 7 2.3025 -1.0900 0.0005 29 6 1.8538 -2.4846 0.0004 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8896 0.5142 32 1 -0.3633 0.8903 0.5134 33 1 1.9741 2.1211 -0.0009 34 1 4.6029 2.5069 -0.4330 35 1 5.6425 1.0704 -0.5878 36 1 6.1674 -0.2146 1.3207 37 1 4.7483 -0.0476 2.4048 38 1 7.2310 0.0080 3.4720 39 1 6.0086 1.1893 4.0460 40 1 7.5292 4.2404 2.5152 41 1 6.0075 3.5848 3.3241 42 1 8.8753 2.7072 -2.3107 43 1 7.4110 1.7926 -2.8815 44 1 9.8432 0.6981 -1.2927 45 1 9.9768 -1.2971 -0.7202 46 1 6.8527 -0.0801 -0.9837 47 1 8.0993 0.1039 0.3272 48 1 1.7430 -2.8306 -1.0273 49 1 2.5894 -3.1031 0.5147 50 1 0.8950 -2.5578 0.5137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277929704.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:10 Heat of formation + Delta-G solvation = 127.847937 kcal Electronic energy + Delta-G solvation = -31731.567220 eV Core-core repulsion = 27763.294484 eV Total energy + Delta-G solvation = -3968.272737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.36019 -40.60365 -38.58080 -36.98109 -34.80731 -32.91256 -32.60626 -32.06128 -30.72243 -28.94023 -27.47619 -27.07490 -25.52566 -24.95268 -24.70872 -23.14070 -22.03599 -20.68116 -20.17816 -20.13095 -19.37841 -17.79085 -17.42531 -16.63405 -16.47988 -15.78377 -15.68647 -15.32198 -14.89583 -14.52462 -14.18257 -13.98941 -13.82320 -13.77175 -13.49838 -13.41596 -13.34904 -12.89943 -12.64238 -12.54269 -12.44756 -12.24438 -12.21431 -12.01687 -11.81715 -11.58026 -11.48598 -11.27201 -11.01122 -10.91889 -10.73003 -10.51087 -10.42718 -10.20160 -10.15851 -9.67338 -9.33497 -9.10914 -8.66570 -8.54017 -8.45902 -8.13854 -7.99225 -6.51626 -4.24793 1.84925 2.47593 2.65642 2.86929 3.30549 3.38310 3.38970 3.57309 3.75806 4.03099 4.43101 4.44422 4.50791 4.65571 4.72826 4.84102 4.87907 4.93880 5.02039 5.08425 5.17623 5.23773 5.27740 5.29262 5.38109 5.46054 5.55131 5.66409 5.70896 5.80284 5.86461 5.87888 5.89527 5.93245 5.96710 6.01563 6.10512 6.11819 6.18759 6.23526 6.29134 6.40655 6.41748 6.57871 6.67995 6.88801 7.02409 7.03610 7.26033 7.79648 7.97109 8.26830 8.31278 8.59134 8.70675 9.47827 10.87604 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007645 B = 0.004776 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.809275 B = 5861.688960 C = 8122.917377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.073 3.927 3 C -0.255 4.255 4 C 0.087 3.913 5 C 0.106 3.894 6 N -0.464 5.464 7 C 0.039 3.961 8 C -0.093 4.093 9 C -0.160 4.160 10 H 0.116 0.884 11 C -0.098 4.098 12 C -0.007 4.007 13 C 0.557 3.443 14 O -0.552 6.552 15 N -0.635 5.635 16 C 0.111 3.889 17 C 0.016 3.984 18 C -0.595 4.595 19 H 0.056 0.944 20 C 0.027 3.973 21 N -0.902 5.902 22 Si 1.067 2.933 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.282 1.282 26 C 0.096 3.904 27 N -0.280 5.280 28 N -0.374 5.374 29 C 0.101 3.899 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.269 0.731 46 H 0.082 0.918 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 1.393 7.720 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.284 4.284 4 C -0.079 4.079 5 C -0.023 4.023 6 N -0.189 5.189 7 C -0.088 4.088 8 C -0.131 4.131 9 C -0.180 4.180 10 H 0.134 0.866 11 C -0.137 4.137 12 C -0.100 4.100 13 C 0.344 3.656 14 O -0.429 6.429 15 N -0.369 5.369 16 C -0.011 4.011 17 C -0.003 4.003 18 C -0.633 4.633 19 H 0.074 0.926 20 C -0.179 4.179 21 N -0.536 5.536 22 Si 0.895 3.105 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.207 1.207 26 C -0.026 4.026 27 N -0.102 5.102 28 N -0.157 5.157 29 C -0.040 4.040 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.162 0.838 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.108 0.892 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.892 -0.386 7.565 17.605 hybrid contribution -0.548 1.794 -0.169 1.884 sum -16.440 1.408 7.396 18.082 Atomic orbital electron populations 1.20407 0.87549 1.03568 1.03129 1.21023 0.94483 0.87389 1.02514 1.21082 0.91589 0.98912 1.16861 1.21928 0.95238 0.91268 0.99454 1.20937 0.93027 0.97901 0.90412 1.64229 1.24802 1.13462 1.16391 1.23455 0.98821 0.91033 0.95461 1.22132 0.96838 0.96473 0.97661 1.23798 0.99023 0.94927 1.00202 0.86576 1.23089 1.01858 0.92770 0.95937 1.22654 0.92362 1.05513 0.89485 1.19220 0.77506 0.84631 0.84272 1.90636 1.57539 1.18651 1.76121 1.50524 1.61274 1.08530 1.16564 1.23383 0.96087 0.99124 0.82472 1.20625 0.93561 0.92104 0.94003 1.21792 1.41294 0.98608 1.01644 0.92582 1.25839 0.92667 0.99055 1.00310 1.70814 1.40036 1.37136 1.05597 0.83559 0.76473 0.75839 0.74637 1.21254 1.21357 1.20693 1.23965 1.00727 0.77129 1.00790 1.77464 0.95904 1.12301 1.24574 1.48428 1.03879 1.05847 1.57524 1.21807 1.00741 0.78125 1.03333 0.90371 0.91370 0.89756 0.83762 0.89167 0.90164 0.92232 0.89932 0.90175 0.90516 0.87514 0.87695 0.91811 0.90509 0.92766 0.91997 0.90028 0.92245 0.90821 0.89193 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.12 36.00 0.36 -0.27 16 2 C 0.07 0.87 6.93 -82.27 -0.57 0.30 16 3 C -0.25 -3.58 10.65 -40.01 -0.43 -4.01 16 4 C 0.09 1.44 5.89 -82.41 -0.49 0.95 16 5 C 0.11 1.84 4.58 -4.97 -0.02 1.82 16 6 N -0.46 -7.54 5.25 -218.10 -1.15 -8.69 16 7 C 0.04 0.60 5.48 -2.18 -0.01 0.59 16 8 C -0.09 -1.23 6.86 -24.89 -0.17 -1.40 16 9 C -0.16 -2.34 6.92 -89.32 -0.62 -2.96 16 10 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16 11 C -0.10 -1.40 9.90 -26.73 -0.26 -1.67 16 12 C -0.01 -0.12 2.60 -131.63 -0.34 -0.46 16 13 C 0.56 11.28 6.21 -10.98 -0.07 11.22 16 14 O -0.55 -12.65 17.68 5.56 0.10 -12.56 16 15 N -0.63 -13.05 2.71 -178.45 -0.48 -13.53 16 16 C 0.11 2.36 8.39 -2.97 -0.02 2.33 16 17 C 0.02 0.38 3.09 -90.84 -0.28 0.10 16 18 C -0.60 -15.51 8.77 -34.43 -0.30 -15.81 16 19 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 20 C 0.03 0.72 5.46 -17.82 -0.10 0.63 16 21 N -0.90 -25.43 13.65 55.43 0.76 -24.67 16 22 Si 1.07 23.90 29.90 -169.99 -5.08 18.81 16 23 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.10 2.05 5.83 -2.98 -0.02 2.03 16 27 N -0.28 -4.71 12.12 33.67 0.41 -4.30 16 28 N -0.37 -4.95 4.01 -63.89 -0.26 -5.21 16 29 C 0.10 0.89 11.27 59.85 0.67 1.56 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.38 7.08 -51.93 -0.37 0.01 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.09 1.59 7.98 -51.93 -0.41 1.18 16 35 H 0.08 1.55 3.41 -51.93 -0.18 1.38 16 36 H 0.06 1.04 6.35 -51.93 -0.33 0.71 16 37 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 38 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 44 H 0.05 1.36 7.61 -51.93 -0.40 0.97 16 45 H 0.27 7.52 7.04 -40.82 -0.29 7.23 16 46 H 0.08 1.84 6.68 -51.93 -0.35 1.49 16 47 H 0.06 1.26 7.69 -51.93 -0.40 0.86 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.08 0.47 7.05 -51.93 -0.37 0.11 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -32.26 399.81 -10.12 -42.37 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.77 Total: 6.79 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -2.66 Total: -5.04 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.72 Total: -56.41 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.10 Total: -12.56 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.08 Total: 18.81 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.26 -10.12 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277929704.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.223 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds