Wall clock time and date at job start Wed Apr 1 2020 03:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.12981 * 2 1 4 4 C 1.39874 * 107.91974 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.89589 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47279 * 94.99995 * 5 4 3 7 7 C 1.48027 * 111.46671 * 58.77923 * 6 5 4 8 8 C 1.54936 * 103.45604 * 159.40577 * 7 6 5 9 9 C 1.54557 * 102.94599 * 322.92225 * 8 7 6 10 10 H 1.08992 * 117.57794 * 242.98190 * 9 8 7 11 11 C 1.52940 * 118.19829 * 85.57163 * 9 8 7 12 12 C 1.47944 * 111.00007 * 176.77414 * 6 5 4 13 13 C 1.50699 * 117.37360 * 354.64581 * 12 6 5 14 14 O 1.21280 * 120.00344 * 118.25499 * 13 12 6 15 15 N 1.34780 * 119.99807 * 298.25821 * 13 12 6 16 16 C 1.47581 * 134.49117 * 174.34074 * 15 13 12 17 17 C 1.53945 * 86.11352 * 155.35485 * 16 15 13 18 18 C 1.50712 * 113.74092 * 137.95286 * 17 16 15 19 19 H 1.07996 * 119.99876 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99648 * 179.97438 * 18 17 16 21 21 N 1.31505 * 120.00242 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99693 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46970 * 59.99901 * 22 20 18 24 24 H 1.48506 * 109.47101 * 300.00342 * 22 20 18 25 25 H 1.48495 * 109.47283 * 180.02562 * 22 20 18 26 26 C 1.47581 * 134.49027 * 354.32869 * 15 13 12 27 27 N 1.30835 * 108.20045 * 0.26084 * 4 3 2 28 28 N 1.34946 * 126.12345 * 179.97438 * 2 1 3 29 29 C 1.46502 * 126.03941 * 0.03361 * 28 2 1 30 30 H 1.09000 * 109.46830 * 90.02109 * 1 2 3 31 31 H 1.08990 * 109.47372 * 210.02645 * 1 2 3 32 32 H 1.09004 * 109.47015 * 330.02968 * 1 2 3 33 33 H 1.08003 * 126.03821 * 359.94095 * 3 2 1 34 34 H 1.08999 * 109.47371 * 334.99760 * 5 4 3 35 35 H 1.09004 * 109.46981 * 214.99935 * 5 4 3 36 36 H 1.09004 * 110.22551 * 41.05489 * 7 6 5 37 37 H 1.08992 * 110.88981 * 278.07909 * 7 6 5 38 38 H 1.09007 * 110.72044 * 204.55446 * 8 7 6 39 39 H 1.09003 * 110.71915 * 81.29073 * 8 7 6 40 40 H 1.09000 * 117.45545 * 160.65173 * 11 9 8 41 41 H 1.08999 * 117.45325 * 15.87472 * 11 9 8 42 42 H 1.08992 * 113.76969 * 41.05121 * 16 15 13 43 43 H 1.09006 * 113.76559 * 269.65170 * 16 15 13 44 44 H 1.09004 * 113.74328 * 269.14618 * 17 16 15 45 45 H 0.97007 * 120.00246 * 0.02562 * 21 20 18 46 46 H 1.08999 * 113.76677 * 90.34482 * 26 15 13 47 47 H 1.08999 * 113.77253 * 318.94394 * 26 15 13 48 48 H 1.09005 * 109.47034 * 90.00033 * 29 28 2 49 49 H 1.08995 * 109.47405 * 210.00229 * 29 28 2 50 50 H 1.08996 * 109.47323 * 330.00667 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 0.0006 5 6 4.8543 1.5393 0.0013 6 7 5.3211 1.7284 1.3814 7 6 5.6481 0.4359 2.0246 8 6 6.5858 0.8401 3.1898 9 6 7.4155 1.9939 2.5823 10 1 8.4912 1.8460 2.4869 11 6 6.8362 3.4081 2.6384 12 6 6.5650 2.5287 1.4153 13 6 7.1916 2.8918 0.0938 14 8 7.3075 4.0569 -0.2227 15 7 7.6232 1.9218 -0.7365 16 6 8.1703 1.9013 -2.1070 17 6 8.8423 0.5754 -1.7065 18 6 8.7741 -0.4861 -2.7742 19 1 8.2847 -0.2763 -3.7138 20 6 9.3365 -1.7251 -2.5513 21 7 9.9329 -1.9804 -1.4074 22 14 9.2514 -3.0410 -3.8743 23 1 9.9312 -2.5539 -5.1015 24 1 7.8302 -3.3423 -4.1822 25 1 9.9246 -4.2732 -3.3910 26 6 7.7387 0.4537 -0.6401 27 7 3.6333 -0.6525 -0.0047 28 7 2.3025 -1.0900 0.0005 29 6 1.8538 -2.4846 0.0004 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8896 0.5142 32 1 -0.3633 0.8903 0.5134 33 1 1.9741 2.1211 -0.0009 34 1 4.6029 2.5069 -0.4330 35 1 5.6425 1.0704 -0.5878 36 1 6.1674 -0.2146 1.3207 37 1 4.7483 -0.0476 2.4048 38 1 7.2310 0.0080 3.4720 39 1 6.0086 1.1893 4.0460 40 1 7.5292 4.2404 2.5152 41 1 6.0075 3.5848 3.3241 42 1 8.8753 2.7072 -2.3107 43 1 7.4110 1.7926 -2.8815 44 1 9.8432 0.6981 -1.2927 45 1 9.9768 -1.2971 -0.7202 46 1 6.8527 -0.0801 -0.9837 47 1 8.0993 0.1039 0.3272 48 1 1.7430 -2.8306 -1.0273 49 1 2.5894 -3.1031 0.5147 50 1 0.8950 -2.5578 0.5137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277929704.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:09 Heat of formation + Delta-G solvation = 107.489330 kcal Electronic energy + Delta-G solvation = -31732.450036 eV Core-core repulsion = 27763.294484 eV Total energy + Delta-G solvation = -3969.155552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.50558 -41.94919 -40.16521 -38.70379 -35.96879 -34.90347 -33.69649 -32.89026 -32.02100 -30.65535 -28.53943 -27.90072 -27.30003 -26.84682 -25.83876 -24.47785 -23.57144 -21.96175 -21.78981 -21.18062 -20.46786 -19.32883 -19.25036 -18.20867 -17.55182 -17.34793 -16.92155 -16.60392 -16.41397 -15.87090 -15.65325 -15.39666 -15.22007 -15.03073 -14.84597 -14.64176 -14.11741 -13.99225 -13.88702 -13.79691 -13.72822 -13.58066 -13.38666 -13.28672 -13.11860 -12.96775 -12.87405 -12.70578 -12.54449 -12.50361 -12.09178 -11.95827 -11.88367 -11.61324 -11.51562 -11.43093 -10.94116 -10.60964 -10.51345 -10.15659 -9.78103 -9.51208 -9.42460 -8.65861 -6.39092 0.83437 1.19928 1.55094 1.57757 1.61299 1.64970 1.71902 1.80858 2.43944 2.56179 2.77654 3.11992 3.18795 3.45657 3.49973 3.57231 3.71432 3.82544 3.96194 3.98970 4.09687 4.14453 4.20799 4.27814 4.30888 4.33342 4.36119 4.38849 4.43451 4.48558 4.59755 4.62410 4.63833 4.68123 4.75215 4.76198 4.76775 4.83195 4.86601 4.89855 4.99142 5.06943 5.13107 5.23687 5.29591 5.54962 5.63297 5.70951 5.94021 6.13691 6.16738 6.51601 6.63947 6.71948 6.93436 7.40204 8.74175 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007645 B = 0.004776 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.809275 B = 5861.688960 C = 8122.917377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.088 3.912 3 C -0.282 4.282 4 C 0.070 3.930 5 C 0.114 3.886 6 N -0.452 5.452 7 C 0.045 3.955 8 C -0.084 4.084 9 C -0.149 4.149 10 H 0.112 0.888 11 C -0.077 4.077 12 C -0.037 4.037 13 C 0.556 3.444 14 O -0.581 6.581 15 N -0.632 5.632 16 C 0.115 3.885 17 C 0.007 3.993 18 C -0.605 4.605 19 H 0.053 0.947 20 C -0.017 4.017 21 N -0.925 5.925 22 Si 1.110 2.890 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.284 1.284 26 C 0.124 3.876 27 N -0.325 5.325 28 N -0.375 5.375 29 C 0.091 3.909 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.032 0.968 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.259 0.741 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 0.824 8.781 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 C -0.311 4.311 4 C -0.095 4.095 5 C -0.016 4.016 6 N -0.177 5.177 7 C -0.082 4.082 8 C -0.121 4.121 9 C -0.168 4.168 10 H 0.130 0.870 11 C -0.115 4.115 12 C -0.130 4.130 13 C 0.345 3.655 14 O -0.461 6.461 15 N -0.366 5.366 16 C -0.007 4.007 17 C -0.012 4.012 18 C -0.643 4.643 19 H 0.072 0.928 20 C -0.217 4.217 21 N -0.561 5.561 22 Si 0.932 3.068 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.209 1.209 26 C 0.002 3.998 27 N -0.149 5.149 28 N -0.158 5.158 29 C -0.049 4.049 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.171 0.829 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.147 0.853 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.362 -0.943 8.634 20.312 hybrid contribution 0.156 1.981 -0.526 2.056 sum -18.206 1.038 8.108 19.957 Atomic orbital electron populations 1.20596 0.83707 1.05444 1.04566 1.21723 0.96550 0.86209 0.99532 1.21309 0.90976 1.00253 1.18593 1.21844 0.95681 0.91386 1.00591 1.20716 0.93068 0.97210 0.90587 1.64348 1.24018 1.13721 1.15629 1.23386 0.99037 0.90253 0.95555 1.22163 0.96463 0.96226 0.97282 1.23930 0.98818 0.95928 0.98145 0.86972 1.23222 1.02121 0.92353 0.93795 1.22737 0.93439 1.08359 0.88493 1.19825 0.76634 0.83909 0.85150 1.90606 1.58744 1.19675 1.77032 1.50464 1.61462 1.08268 1.16362 1.23267 0.96096 0.98078 0.83265 1.20564 0.93288 0.92960 0.94435 1.22067 1.40833 0.99299 1.02057 0.92824 1.27104 0.91998 1.01287 1.01339 1.70919 1.41828 1.37050 1.06293 0.83003 0.77223 0.73555 0.72985 1.19554 1.20038 1.20920 1.23484 0.99019 0.77565 0.99730 1.77361 0.98570 1.12599 1.26377 1.48793 1.02915 1.07646 1.56444 1.22186 1.02298 0.75923 1.04481 0.88942 0.88967 0.88423 0.82887 0.90415 0.92791 0.95005 0.89799 0.89032 0.88029 0.87379 0.85304 0.91302 0.90160 0.94689 0.93077 0.91330 0.92340 0.89921 0.89695 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.12 71.24 0.72 -0.20 16 2 C 0.09 1.95 6.93 41.40 0.29 2.24 16 3 C -0.28 -7.81 10.65 21.99 0.23 -7.57 16 4 C 0.07 2.35 5.89 43.10 0.25 2.61 16 5 C 0.11 4.09 4.58 85.56 0.39 4.48 16 6 N -0.45 -14.75 5.25 -843.95 -4.43 -19.18 16 7 C 0.04 1.37 5.48 86.75 0.48 1.85 16 8 C -0.08 -2.06 6.86 31.79 0.22 -1.84 16 9 C -0.15 -4.16 6.92 -9.95 -0.07 -4.23 16 10 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 11 C -0.08 -2.05 9.90 30.60 0.30 -1.75 16 12 C -0.04 -1.26 2.60 2.94 0.01 -1.25 16 13 C 0.56 23.02 6.21 87.66 0.54 23.57 16 14 O -0.58 -27.11 17.68 -3.03 -0.05 -27.16 16 15 N -0.63 -26.94 2.71 -836.88 -2.27 -29.21 16 16 C 0.11 5.06 8.39 86.48 0.73 5.78 16 17 C 0.01 0.33 3.09 -10.88 -0.03 0.30 16 18 C -0.60 -32.26 8.77 25.60 0.22 -32.03 16 19 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 20 C -0.02 -0.92 5.46 84.66 0.46 -0.46 16 21 N -0.93 -53.35 13.65 21.45 0.29 -53.06 16 22 Si 1.11 48.19 29.90 68.60 2.05 50.24 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 26 C 0.12 5.55 5.83 86.48 0.50 6.05 16 27 N -0.33 -11.14 12.12 -47.38 -0.57 -11.71 16 28 N -0.37 -9.48 4.01 -356.04 -1.43 -10.91 16 29 C 0.09 1.40 11.27 127.77 1.44 2.84 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.58 7.08 -2.39 -0.02 0.57 16 32 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.08 2.89 7.98 -2.39 -0.02 2.87 16 35 H 0.05 2.21 3.41 -2.39 -0.01 2.20 16 36 H 0.03 1.15 6.35 -2.38 -0.02 1.14 16 37 H 0.08 2.54 7.93 -2.39 -0.02 2.53 16 38 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.08 3.46 8.09 -2.38 -0.02 3.44 16 44 H 0.04 1.84 7.61 -2.39 -0.02 1.82 16 45 H 0.26 15.01 7.04 -92.70 -0.65 14.35 16 46 H 0.07 3.27 6.68 -2.39 -0.02 3.26 16 47 H 0.06 2.59 7.69 -2.39 -0.02 2.58 16 48 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.12 0.91 7.05 -2.39 -0.02 0.89 16 Total: -1.00 -72.24 399.81 1.34 -70.90 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 1.06 Total: 29.70 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.69 Total: 0.39 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -8.41 Total: -124.06 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.05 Total: -27.16 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.05 Total: 50.24 kcal Total: -72.24 1.34 -70.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277929704.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.391 kcal (2) G-P(sol) polarization free energy of solvation -72.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds