Wall clock time and date at job start Wed Apr 1 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35316 * 126.12837 * 2 1 4 4 C 1.39868 * 107.92059 * 180.15025 * 3 2 1 5 5 C 1.50701 * 125.89485 * 179.86397 * 4 3 2 6 6 N 1.46904 * 109.47143 * 94.71276 * 5 4 3 7 7 C 1.48870 * 110.69360 * 290.18024 * 6 5 4 8 8 C 1.54941 * 103.07528 * 200.18567 * 7 6 5 9 9 C 1.54558 * 102.93835 * 37.71516 * 8 7 6 10 10 H 1.09000 * 117.57564 * 117.01745 * 9 8 7 11 11 C 1.52942 * 118.92275 * 274.39914 * 9 8 7 12 12 C 1.47938 * 111.00126 * 173.21211 * 6 5 4 13 13 C 1.50706 * 117.37286 * 5.35376 * 12 6 5 14 14 O 1.21275 * 120.00057 * 241.09043 * 13 12 6 15 15 N 1.34779 * 119.99466 * 61.36698 * 13 12 6 16 16 C 1.47064 * 136.05851 * 4.88105 * 15 13 12 17 17 C 1.53755 * 87.88879 * 152.95833 * 16 15 13 18 18 C 1.50700 * 114.08775 * 139.77484 * 17 16 15 19 19 H 1.07995 * 120.00255 * 266.55722 * 18 17 16 20 20 C 1.37887 * 119.99624 * 86.56016 * 18 17 16 21 21 N 1.31511 * 119.99487 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00001 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46885 * 90.00120 * 22 20 18 24 24 H 1.48498 * 109.46949 * 209.99676 * 22 20 18 25 25 H 1.48494 * 109.47248 * 329.99673 * 22 20 18 26 26 C 1.47060 * 136.05551 * 185.24013 * 15 13 12 27 27 N 1.30837 * 108.20196 * 359.59436 * 4 3 2 28 28 N 1.34950 * 126.12515 * 179.70897 * 2 1 3 29 29 C 1.46498 * 126.04011 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.46872 * 270.29311 * 1 2 3 31 31 H 1.09002 * 109.46914 * 30.28893 * 1 2 3 32 32 H 1.08999 * 109.47053 * 150.29181 * 1 2 3 33 33 H 1.08002 * 126.03558 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.47728 * 334.71015 * 5 4 3 35 35 H 1.09004 * 109.46908 * 214.70861 * 5 4 3 36 36 H 1.09002 * 110.52149 * 81.90307 * 7 6 5 37 37 H 1.08994 * 110.95238 * 318.67347 * 7 6 5 38 38 H 1.08998 * 110.72126 * 279.35124 * 8 7 6 39 39 H 1.09002 * 110.71419 * 156.07305 * 8 7 6 40 40 H 1.08995 * 117.44964 * 343.72384 * 11 9 8 41 41 H 1.08996 * 117.45977 * 198.95166 * 11 9 8 42 42 H 1.09004 * 113.46602 * 267.68812 * 16 15 13 43 43 H 1.08995 * 113.47305 * 38.12583 * 16 15 13 44 44 H 1.09001 * 114.57076 * 272.65837 * 17 16 15 45 45 H 0.97007 * 119.99621 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.47033 * 321.86934 * 26 15 13 47 47 H 1.09001 * 113.47162 * 92.31001 * 26 15 13 48 48 H 1.08990 * 109.47196 * 269.97643 * 29 28 2 49 49 H 1.09005 * 109.46630 * 29.97676 * 29 28 2 50 50 H 1.09002 * 109.47069 * 149.97368 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6559 -0.0035 5 6 4.8543 1.5395 -0.0076 6 7 5.3216 1.7354 1.3713 7 6 4.3667 2.5849 2.1347 8 6 5.2269 3.1075 3.3127 9 6 6.6041 3.3503 2.6545 10 1 6.9815 4.3727 2.6365 11 6 7.5860 2.1831 2.5416 12 6 6.6097 2.4626 1.3962 13 6 7.1430 2.9728 0.0823 14 8 8.2119 2.5780 -0.3327 15 7 6.4344 3.8721 -0.6289 16 6 5.1941 4.6375 -0.4321 17 6 5.7690 5.7037 -1.3792 18 6 4.7594 6.2867 -2.3342 19 1 4.6432 5.8643 -3.3213 20 6 3.9842 7.3594 -1.9476 21 7 3.1036 7.8685 -2.7812 22 14 4.1849 8.0896 -0.2400 23 1 5.2108 9.1627 -0.2779 24 1 2.8894 8.6590 0.2102 25 1 4.6140 7.0277 0.7052 26 6 6.5579 4.5151 -1.9457 27 7 3.6334 -0.6524 0.0033 28 7 2.3027 -1.0900 0.0055 29 6 1.8540 -2.4846 0.0132 30 1 -0.3633 0.0053 1.0277 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3633 -0.8926 -0.5093 33 1 1.9741 2.1211 0.0004 34 1 4.6027 2.5049 -0.4466 35 1 5.6423 1.0678 -0.5947 36 1 3.5332 1.9867 2.5028 37 1 4.0072 3.4128 1.5238 38 1 5.3021 2.3559 4.0985 39 1 4.8178 4.0383 3.7055 40 1 7.3969 1.3058 3.1601 41 1 8.6362 2.4239 2.3769 42 1 4.3089 4.1385 -0.8266 43 1 5.0592 4.9903 0.5903 44 1 6.3862 6.4580 -0.8912 45 1 2.5579 8.6230 -2.5091 46 1 7.5851 4.7637 -2.2128 47 1 6.0324 3.9839 -2.7392 48 1 1.7435 -2.8251 1.0426 49 1 0.8951 -2.5605 -0.4996 50 1 2.5895 -3.1057 -0.4981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277929709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:14 Heat of formation + Delta-G solvation = 136.951150 kcal Electronic energy + Delta-G solvation = -31636.710537 eV Core-core repulsion = 27668.832545 eV Total energy + Delta-G solvation = -3967.877992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.36320 -40.67780 -38.75696 -37.09769 -34.82093 -32.79185 -32.63269 -32.05316 -30.82943 -29.53442 -27.53280 -27.07012 -25.78988 -25.28557 -24.75745 -23.18645 -22.02943 -20.59052 -20.42237 -19.84527 -19.26199 -17.86797 -17.41056 -16.88047 -16.61705 -15.85805 -15.70814 -15.32379 -14.84908 -14.72954 -14.26309 -14.22613 -13.81745 -13.58252 -13.54183 -13.39570 -13.34194 -13.03819 -12.77972 -12.67559 -12.57026 -12.50625 -12.36362 -12.10973 -11.81998 -11.73319 -11.50909 -11.38532 -11.02314 -10.96641 -10.77158 -10.59770 -10.38035 -10.30265 -10.12729 -9.78085 -9.41393 -9.16606 -9.11845 -8.70872 -8.47784 -8.25022 -8.12253 -6.25611 -4.28489 1.84093 2.44805 2.61806 2.83573 3.16254 3.22038 3.25642 3.29023 3.68392 3.97103 4.25876 4.38579 4.53051 4.59195 4.67494 4.79983 4.85505 4.90407 4.95942 4.97238 5.02101 5.18609 5.21909 5.28257 5.33553 5.40364 5.58852 5.59874 5.63555 5.67123 5.77462 5.80692 5.81089 5.83953 5.86873 5.90373 6.03530 6.04520 6.17282 6.18956 6.23579 6.25643 6.34861 6.46246 6.65648 6.80812 6.95217 7.01069 7.07844 7.49123 7.79333 8.23080 8.32577 8.55132 8.78482 9.35236 10.86266 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.004374 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.916426 B = 6399.825631 C = 7946.583465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.077 3.923 3 C -0.262 4.262 4 C 0.092 3.908 5 C 0.110 3.890 6 N -0.457 5.457 7 C 0.030 3.970 8 C -0.092 4.092 9 C -0.160 4.160 10 H 0.116 0.884 11 C -0.097 4.097 12 C -0.008 4.008 13 C 0.564 3.436 14 O -0.547 6.547 15 N -0.641 5.641 16 C 0.081 3.919 17 C -0.003 4.003 18 C -0.513 4.513 19 H 0.080 0.920 20 C 0.079 3.921 21 N -0.890 5.890 22 Si 0.873 3.127 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.261 1.261 26 C 0.113 3.887 27 N -0.278 5.278 28 N -0.378 5.378 29 C 0.103 3.897 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.267 0.733 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -14.397 11.229 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C -0.291 4.291 4 C -0.075 4.075 5 C -0.020 4.020 6 N -0.182 5.182 7 C -0.097 4.097 8 C -0.130 4.130 9 C -0.180 4.180 10 H 0.134 0.866 11 C -0.136 4.136 12 C -0.101 4.101 13 C 0.352 3.648 14 O -0.424 6.424 15 N -0.375 5.375 16 C -0.041 4.041 17 C -0.023 4.023 18 C -0.551 4.551 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.526 5.526 22 Si 0.700 3.300 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.185 1.185 26 C -0.009 4.009 27 N -0.101 5.101 28 N -0.161 5.161 29 C -0.039 4.039 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.102 0.898 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.895 -16.358 11.292 20.254 hybrid contribution -0.760 1.797 0.387 1.989 sum -4.655 -14.561 11.679 19.237 Atomic orbital electron populations 1.20438 0.87442 1.03809 1.03155 1.21033 0.94538 0.87290 1.02088 1.21192 0.91638 0.99212 1.17102 1.21902 0.94850 0.91349 0.99353 1.20868 0.93034 0.97797 0.90270 1.64746 0.99706 1.41293 1.12483 1.23744 0.95803 0.95675 0.94463 1.22108 0.92158 1.01413 0.97348 1.23800 0.98512 0.97120 0.98565 0.86649 1.23088 0.95577 0.98432 0.96466 1.22667 0.95827 1.02240 0.89396 1.19046 0.84133 0.77285 0.84368 1.90654 1.22079 1.58627 1.71065 1.50023 1.26425 1.40764 1.20270 1.24113 0.87132 0.91950 1.00931 1.20774 0.95345 0.91600 0.94546 1.20761 1.18390 1.15143 1.00806 0.90150 1.24992 0.94562 0.95923 0.97004 1.69891 1.22858 1.24260 1.35621 0.86926 0.77829 0.80116 0.85119 1.20127 1.21193 1.18526 1.23146 1.00494 0.92385 0.84865 1.77386 0.95697 1.12571 1.24415 1.48447 1.03992 1.05792 1.57895 1.21771 1.00786 0.78238 1.03063 0.90354 0.89434 0.91384 0.83486 0.90086 0.89607 0.89492 0.92261 0.90400 0.90191 0.87700 0.87410 0.89614 0.92163 0.92113 0.92333 0.91846 0.90014 0.90998 0.89780 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.12 36.01 0.36 -0.32 16 2 C 0.08 0.92 6.93 -82.26 -0.57 0.35 16 3 C -0.26 -3.68 10.49 -40.01 -0.42 -4.10 16 4 C 0.09 1.47 6.24 -82.41 -0.51 0.96 16 5 C 0.11 1.81 4.41 -4.97 -0.02 1.79 16 6 N -0.46 -7.08 5.25 -217.38 -1.14 -8.22 16 7 C 0.03 0.40 5.89 -1.71 -0.01 0.39 16 8 C -0.09 -1.09 6.87 -24.89 -0.17 -1.26 16 9 C -0.16 -2.17 6.89 -89.32 -0.62 -2.78 16 10 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 11 C -0.10 -1.34 9.92 -26.73 -0.27 -1.60 16 12 C -0.01 -0.13 2.66 -131.63 -0.35 -0.48 16 13 C 0.56 10.90 6.00 -10.98 -0.07 10.84 16 14 O -0.55 -12.21 17.72 5.56 0.10 -12.11 16 15 N -0.64 -12.19 2.93 -185.08 -0.54 -12.73 16 16 C 0.08 1.53 5.15 -8.38 -0.04 1.49 16 17 C 0.00 -0.06 2.98 -91.12 -0.27 -0.34 16 18 C -0.51 -12.89 9.37 -34.44 -0.32 -13.22 16 19 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 20 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 21 N -0.89 -25.02 13.96 55.43 0.77 -24.25 16 22 Si 0.87 19.36 27.15 -169.99 -4.61 14.74 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.26 -5.35 5.72 56.52 0.32 -5.02 16 26 C 0.11 2.22 8.18 -8.52 -0.07 2.15 16 27 N -0.28 -4.53 12.58 33.67 0.42 -4.11 16 28 N -0.38 -4.81 4.01 -63.88 -0.26 -5.07 16 29 C 0.10 0.81 11.27 59.85 0.67 1.48 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.40 7.08 -51.93 -0.37 0.03 16 33 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 34 H 0.08 1.38 3.68 -51.93 -0.19 1.19 16 35 H 0.09 1.60 7.52 -51.93 -0.39 1.21 16 36 H 0.09 1.12 8.12 -51.93 -0.42 0.69 16 37 H 0.06 0.84 6.03 -51.93 -0.31 0.52 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.09 1.61 6.56 -51.93 -0.34 1.27 16 43 H 0.06 1.10 6.43 -51.93 -0.33 0.76 16 44 H 0.06 1.30 7.03 -51.93 -0.37 0.94 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.43 7.05 -51.93 -0.37 0.07 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -32.25 395.80 -9.86 -42.11 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.80 Total: 6.36 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.77 Total: -2.68 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.74 Total: -54.38 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.10 Total: -12.11 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.61 Total: 14.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.25 -9.86 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277929709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.064 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds