Wall clock time and date at job start Wed Apr 1 2020 03:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35316 * 126.12837 * 2 1 4 4 C 1.39868 * 107.92059 * 180.15025 * 3 2 1 5 5 C 1.50701 * 125.89485 * 179.86397 * 4 3 2 6 6 N 1.46904 * 109.47143 * 94.71276 * 5 4 3 7 7 C 1.48870 * 110.69360 * 290.18024 * 6 5 4 8 8 C 1.54941 * 103.07528 * 200.18567 * 7 6 5 9 9 C 1.54558 * 102.93835 * 37.71516 * 8 7 6 10 10 H 1.09000 * 117.57564 * 117.01745 * 9 8 7 11 11 C 1.52942 * 118.92275 * 274.39914 * 9 8 7 12 12 C 1.47938 * 111.00126 * 173.21211 * 6 5 4 13 13 C 1.50706 * 117.37286 * 5.35376 * 12 6 5 14 14 O 1.21275 * 120.00057 * 241.09043 * 13 12 6 15 15 N 1.34779 * 119.99466 * 61.36698 * 13 12 6 16 16 C 1.47064 * 136.05851 * 4.88105 * 15 13 12 17 17 C 1.53755 * 87.88879 * 152.95833 * 16 15 13 18 18 C 1.50700 * 114.08775 * 139.77484 * 17 16 15 19 19 H 1.07995 * 120.00255 * 266.55722 * 18 17 16 20 20 C 1.37887 * 119.99624 * 86.56016 * 18 17 16 21 21 N 1.31511 * 119.99487 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00001 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46885 * 90.00120 * 22 20 18 24 24 H 1.48498 * 109.46949 * 209.99676 * 22 20 18 25 25 H 1.48494 * 109.47248 * 329.99673 * 22 20 18 26 26 C 1.47060 * 136.05551 * 185.24013 * 15 13 12 27 27 N 1.30837 * 108.20196 * 359.59436 * 4 3 2 28 28 N 1.34950 * 126.12515 * 179.70897 * 2 1 3 29 29 C 1.46498 * 126.04011 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.46872 * 270.29311 * 1 2 3 31 31 H 1.09002 * 109.46914 * 30.28893 * 1 2 3 32 32 H 1.08999 * 109.47053 * 150.29181 * 1 2 3 33 33 H 1.08002 * 126.03558 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.47728 * 334.71015 * 5 4 3 35 35 H 1.09004 * 109.46908 * 214.70861 * 5 4 3 36 36 H 1.09002 * 110.52149 * 81.90307 * 7 6 5 37 37 H 1.08994 * 110.95238 * 318.67347 * 7 6 5 38 38 H 1.08998 * 110.72126 * 279.35124 * 8 7 6 39 39 H 1.09002 * 110.71419 * 156.07305 * 8 7 6 40 40 H 1.08995 * 117.44964 * 343.72384 * 11 9 8 41 41 H 1.08996 * 117.45977 * 198.95166 * 11 9 8 42 42 H 1.09004 * 113.46602 * 267.68812 * 16 15 13 43 43 H 1.08995 * 113.47305 * 38.12583 * 16 15 13 44 44 H 1.09001 * 114.57076 * 272.65837 * 17 16 15 45 45 H 0.97007 * 119.99621 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.47033 * 321.86934 * 26 15 13 47 47 H 1.09001 * 113.47162 * 92.31001 * 26 15 13 48 48 H 1.08990 * 109.47196 * 269.97643 * 29 28 2 49 49 H 1.09005 * 109.46630 * 29.97676 * 29 28 2 50 50 H 1.09002 * 109.47069 * 149.97368 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6559 -0.0035 5 6 4.8543 1.5395 -0.0076 6 7 5.3216 1.7354 1.3713 7 6 4.3667 2.5849 2.1347 8 6 5.2269 3.1075 3.3127 9 6 6.6041 3.3503 2.6545 10 1 6.9815 4.3727 2.6365 11 6 7.5860 2.1831 2.5416 12 6 6.6097 2.4626 1.3962 13 6 7.1430 2.9728 0.0823 14 8 8.2119 2.5780 -0.3327 15 7 6.4344 3.8721 -0.6289 16 6 5.1941 4.6375 -0.4321 17 6 5.7690 5.7037 -1.3792 18 6 4.7594 6.2867 -2.3342 19 1 4.6432 5.8643 -3.3213 20 6 3.9842 7.3594 -1.9476 21 7 3.1036 7.8685 -2.7812 22 14 4.1849 8.0896 -0.2400 23 1 5.2108 9.1627 -0.2779 24 1 2.8894 8.6590 0.2102 25 1 4.6140 7.0277 0.7052 26 6 6.5579 4.5151 -1.9457 27 7 3.6334 -0.6524 0.0033 28 7 2.3027 -1.0900 0.0055 29 6 1.8540 -2.4846 0.0132 30 1 -0.3633 0.0053 1.0277 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3633 -0.8926 -0.5093 33 1 1.9741 2.1211 0.0004 34 1 4.6027 2.5049 -0.4466 35 1 5.6423 1.0678 -0.5947 36 1 3.5332 1.9867 2.5028 37 1 4.0072 3.4128 1.5238 38 1 5.3021 2.3559 4.0985 39 1 4.8178 4.0383 3.7055 40 1 7.3969 1.3058 3.1601 41 1 8.6362 2.4239 2.3769 42 1 4.3089 4.1385 -0.8266 43 1 5.0592 4.9903 0.5903 44 1 6.3862 6.4580 -0.8912 45 1 2.5579 8.6230 -2.5091 46 1 7.5851 4.7637 -2.2128 47 1 6.0324 3.9839 -2.7392 48 1 1.7435 -2.8251 1.0426 49 1 0.8951 -2.5605 -0.4996 50 1 2.5895 -3.1057 -0.4981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277929709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:13 Heat of formation + Delta-G solvation = 115.364891 kcal Electronic energy + Delta-G solvation = -31637.646588 eV Core-core repulsion = 27668.832545 eV Total energy + Delta-G solvation = -3968.814042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.45613 -41.93410 -40.18902 -38.69073 -35.90597 -34.67117 -33.71553 -32.87333 -32.06129 -31.08565 -28.52777 -27.90376 -27.50500 -26.91505 -25.79408 -24.35931 -23.41884 -21.62661 -21.55152 -21.36957 -20.27615 -19.33515 -19.18282 -18.36355 -17.60168 -17.26671 -16.74183 -16.60044 -16.33542 -16.02955 -15.73568 -15.22881 -15.05968 -15.00051 -14.78486 -14.56416 -14.44494 -14.10070 -13.97839 -13.94307 -13.58834 -13.45334 -13.38982 -13.26854 -13.16403 -12.89688 -12.72887 -12.64674 -12.53226 -12.40306 -12.05019 -11.91789 -11.81662 -11.53085 -11.47000 -11.43429 -11.23687 -10.74508 -10.58330 -10.12328 -9.73885 -9.51805 -9.40361 -8.26726 -6.34968 0.85072 1.25197 1.42177 1.44694 1.54530 1.59820 1.66823 1.78493 2.39300 2.48451 2.81826 3.03655 3.26669 3.42086 3.58937 3.66960 3.73287 3.84987 3.95232 4.05866 4.09610 4.20417 4.27066 4.30307 4.36320 4.37585 4.40137 4.42671 4.54001 4.55633 4.62419 4.67685 4.71779 4.74537 4.76652 4.77163 4.81409 4.82983 4.88812 4.98268 5.05388 5.08790 5.19302 5.26216 5.32123 5.56060 5.58559 5.69914 5.74638 6.17045 6.28203 6.68671 6.73643 6.74234 6.99466 7.32548 8.88622 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.004374 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.916426 B = 6399.825631 C = 7946.583465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.077 3.923 5 C 0.121 3.879 6 N -0.456 5.456 7 C 0.030 3.970 8 C -0.084 4.084 9 C -0.139 4.139 10 H 0.121 0.879 11 C -0.088 4.088 12 C -0.038 4.038 13 C 0.563 3.437 14 O -0.584 6.584 15 N -0.637 5.637 16 C 0.100 3.900 17 C -0.006 4.006 18 C -0.514 4.514 19 H 0.040 0.960 20 C 0.026 3.974 21 N -0.941 5.941 22 Si 0.936 3.064 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.229 1.229 26 C 0.111 3.889 27 N -0.321 5.321 28 N -0.376 5.376 29 C 0.092 3.908 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.268 0.732 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 -15.171 14.658 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 C -0.318 4.318 4 C -0.089 4.089 5 C -0.008 4.008 6 N -0.181 5.181 7 C -0.097 4.097 8 C -0.122 4.122 9 C -0.159 4.159 10 H 0.139 0.861 11 C -0.126 4.126 12 C -0.132 4.132 13 C 0.352 3.648 14 O -0.464 6.464 15 N -0.371 5.371 16 C -0.022 4.022 17 C -0.026 4.026 18 C -0.552 4.552 19 H 0.059 0.941 20 C -0.173 4.173 21 N -0.579 5.579 22 Si 0.759 3.241 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.152 1.152 26 C -0.011 4.011 27 N -0.145 5.145 28 N -0.160 5.160 29 C -0.048 4.048 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.167 0.833 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.138 0.862 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.107 0.893 49 H 0.135 0.865 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.296 -17.164 14.735 23.233 hybrid contribution -0.348 1.911 -0.821 2.109 sum -5.644 -15.253 13.914 21.403 Atomic orbital electron populations 1.20606 0.83983 1.05201 1.04757 1.21666 0.96432 0.86356 0.99403 1.21328 0.91234 1.00181 1.19074 1.21841 0.95221 0.91501 1.00330 1.20597 0.92447 0.97122 0.90665 1.64847 0.99927 1.41677 1.11662 1.23800 0.95904 0.95279 0.94702 1.22172 0.90331 1.02940 0.96721 1.23988 0.99106 0.97071 0.95731 0.86139 1.23190 0.95330 0.99312 0.94813 1.22704 0.97106 1.04852 0.88496 1.19668 0.83450 0.76395 0.85250 1.90622 1.23816 1.59717 1.72244 1.49984 1.26382 1.40945 1.19759 1.23831 0.86813 0.90562 1.01023 1.20678 0.94904 0.92232 0.94750 1.20870 1.19170 1.15129 1.00048 0.94124 1.25818 0.94009 0.96293 1.01225 1.70038 1.24446 1.25292 1.38133 0.85916 0.77709 0.79881 0.80557 1.20098 1.21148 1.15217 1.23053 1.00436 0.92085 0.85517 1.77274 0.98302 1.12806 1.26123 1.48816 1.02938 1.07617 1.56606 1.22185 1.02135 0.75812 1.04681 0.88437 0.89033 0.89028 0.83302 0.91160 0.92959 0.88852 0.93005 0.88799 0.87958 0.86214 0.87576 0.89863 0.90360 0.91407 0.92274 0.91554 0.90519 0.89311 0.86506 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 10.12 71.24 0.72 -0.32 16 2 C 0.09 1.99 6.93 41.41 0.29 2.28 16 3 C -0.29 -8.00 10.49 21.99 0.23 -7.77 16 4 C 0.08 2.48 6.24 43.10 0.27 2.75 16 5 C 0.12 4.14 4.41 85.56 0.38 4.52 16 6 N -0.46 -13.80 5.25 -841.65 -4.42 -18.22 16 7 C 0.03 0.73 5.89 86.58 0.51 1.24 16 8 C -0.08 -1.65 6.87 31.79 0.22 -1.43 16 9 C -0.14 -3.34 6.89 -9.95 -0.07 -3.41 16 10 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 11 C -0.09 -2.25 9.92 30.60 0.30 -1.95 16 12 C -0.04 -1.20 2.66 2.94 0.01 -1.19 16 13 C 0.56 21.84 6.00 87.66 0.53 22.37 16 14 O -0.58 -26.61 17.72 -3.01 -0.05 -26.66 16 15 N -0.64 -24.31 2.93 -857.87 -2.52 -26.82 16 16 C 0.10 3.68 5.15 83.26 0.43 4.11 16 17 C -0.01 -0.26 2.98 -11.12 -0.03 -0.29 16 18 C -0.51 -26.53 9.37 25.60 0.24 -26.29 16 19 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 20 C 0.03 1.35 5.47 84.66 0.46 1.81 16 21 N -0.94 -54.30 13.96 21.45 0.30 -54.00 16 22 Si 0.94 38.98 27.15 68.60 1.86 40.84 16 23 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.23 -8.28 5.72 99.48 0.57 -7.71 16 26 C 0.11 4.49 8.18 83.17 0.68 5.17 16 27 N -0.32 -10.54 12.58 -47.39 -0.60 -11.13 16 28 N -0.38 -9.06 4.01 -356.03 -1.43 -10.48 16 29 C 0.09 1.21 11.27 127.77 1.44 2.65 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 0.68 7.08 -2.39 -0.02 0.66 16 33 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.07 2.48 3.68 -2.39 -0.01 2.47 16 35 H 0.05 2.08 7.52 -2.38 -0.02 2.06 16 36 H 0.09 2.19 8.12 -2.39 -0.02 2.17 16 37 H 0.05 1.35 6.03 -2.39 -0.01 1.34 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.08 3.15 6.56 -2.39 -0.02 3.13 16 43 H 0.08 2.63 6.43 -2.39 -0.02 2.61 16 44 H 0.07 2.81 7.03 -2.39 -0.02 2.79 16 45 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 46 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.08 3.14 8.10 -2.39 -0.02 3.12 16 48 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.12 0.77 7.05 -2.38 -0.02 0.75 16 50 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.49 395.80 0.56 -72.93 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.81 Total: 29.29 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.60 Total: 4.26 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -8.66 Total: -120.65 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.86 Total: 40.84 kcal Total: -73.49 0.56 -72.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277929709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.295 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds