Wall clock time and date at job start Wed Apr 1 2020 03:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35313 * 126.13336 * 2 1 4 4 C 1.39869 * 107.92519 * 180.14826 * 3 2 1 5 5 C 1.50699 * 125.90246 * 179.86151 * 4 3 2 6 6 N 1.46901 * 109.46636 * 94.71325 * 5 4 3 7 7 C 1.48108 * 110.99651 * 190.00174 * 6 5 4 8 8 C 1.53291 * 85.92327 * 222.87508 * 7 6 5 9 9 C 1.52471 * 128.80292 * 243.43191 * 8 7 6 10 10 C 1.52335 * 128.80253 * 163.13996 * 8 7 6 11 11 H 1.09002 * 117.51466 * 10.39637 * 10 8 7 12 12 C 1.50700 * 117.51591 * 225.31693 * 10 8 7 13 13 O 1.21281 * 120.00145 * 0.17048 * 12 10 8 14 14 N 1.34781 * 119.99459 * 180.16723 * 12 10 8 15 15 C 1.47583 * 134.48583 * 180.02562 * 14 12 10 16 16 C 1.53950 * 86.11474 * 155.36469 * 15 14 12 17 17 C 1.50695 * 113.74152 * 137.95242 * 16 15 14 18 18 H 1.07999 * 120.00538 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99661 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00030 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99863 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00044 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00037 * 21 19 17 25 25 C 1.47574 * 134.49483 * 0.02562 * 14 12 10 26 26 C 1.48098 * 111.00060 * 90.41949 * 6 5 4 27 27 N 1.30837 * 108.20102 * 359.59888 * 4 3 2 28 28 N 1.34955 * 126.12546 * 179.70835 * 2 1 3 29 29 C 1.46504 * 126.03489 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47201 * 270.29437 * 1 2 3 31 31 H 1.09004 * 109.46914 * 30.28670 * 1 2 3 32 32 H 1.08997 * 109.47489 * 150.29470 * 1 2 3 33 33 H 1.08007 * 126.03582 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.46840 * 334.71448 * 5 4 3 35 35 H 1.08999 * 109.46959 * 214.71326 * 5 4 3 36 36 H 1.08995 * 113.80023 * 108.62800 * 7 6 5 37 37 H 1.08999 * 113.90528 * 337.14052 * 7 6 5 38 38 H 1.09004 * 117.54633 * 134.72245 * 9 8 7 39 39 H 1.09000 * 117.50808 * 349.57308 * 9 8 7 40 40 H 1.08999 * 113.77005 * 41.06305 * 15 14 12 41 41 H 1.09004 * 113.87008 * 269.67247 * 15 14 12 42 42 H 1.09004 * 113.73556 * 269.15443 * 16 15 14 43 43 H 0.97001 * 119.99697 * 359.97438 * 20 19 17 44 44 H 1.09003 * 113.76927 * 90.34204 * 25 14 12 45 45 H 1.08991 * 113.77437 * 318.93659 * 25 14 12 46 46 H 1.08999 * 113.80081 * 22.86377 * 26 6 5 47 47 H 1.09003 * 113.80000 * 251.37363 * 26 6 5 48 48 H 1.08997 * 109.47421 * 269.97968 * 29 28 2 49 49 H 1.09002 * 109.47238 * 29.97896 * 29 28 2 50 50 H 1.08995 * 109.47163 * 149.97483 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 -0.0034 5 6 4.8544 1.5392 -0.0076 6 7 5.3216 1.7351 1.3713 7 6 6.3672 2.7823 1.4336 8 6 7.1017 1.8377 2.3918 9 6 7.4553 2.0510 3.8595 10 6 8.5635 1.8596 2.8199 11 1 9.1549 2.7337 2.5476 12 6 9.3064 0.5484 2.8276 13 8 8.7395 -0.4717 2.4977 14 7 10.6008 0.5096 3.2011 15 6 11.6098 -0.5603 3.3251 16 6 12.6586 0.5508 3.1363 17 6 13.8474 0.4252 4.0537 18 1 13.9018 -0.3913 4.7586 19 6 14.8658 1.3527 3.9933 20 7 14.8000 2.3467 3.1346 21 14 16.3392 1.1974 5.1311 22 1 17.3862 0.3731 4.4756 23 1 15.9194 0.5479 6.3988 24 1 16.8834 2.5478 5.4234 25 6 11.5784 1.5198 3.6503 26 6 6.3054 0.6953 1.7510 27 7 3.6334 -0.6525 0.0033 28 7 2.3026 -1.0901 0.0055 29 6 1.8538 -2.4846 0.0132 30 1 -0.3634 0.0053 1.0277 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3634 -0.8926 -0.5092 33 1 1.9741 2.1210 0.0004 34 1 4.6027 2.5047 -0.4466 35 1 5.6423 1.0674 -0.5947 36 1 6.0338 3.7095 1.8996 37 1 6.8878 2.9434 0.4897 38 1 7.2638 1.2285 4.5488 39 1 7.3175 3.0511 4.2704 40 1 11.5850 -1.2840 2.5104 41 1 11.6379 -1.0282 4.3091 42 1 12.9399 0.7164 2.0963 43 1 14.0350 2.4271 2.5436 44 1 11.5961 1.6641 4.7306 45 1 11.5286 2.4566 3.0955 46 1 6.8066 0.2325 0.9009 47 1 5.9232 -0.0309 2.4685 48 1 1.7432 -2.8251 1.0427 49 1 0.8949 -2.5606 -0.4996 50 1 2.5892 -3.1058 -0.4980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277929801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:38 Heat of formation + Delta-G solvation = 141.383860 kcal Electronic energy + Delta-G solvation = -29104.153089 eV Core-core repulsion = 25136.467314 eV Total energy + Delta-G solvation = -3967.685775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46435 -40.46501 -39.12862 -37.15452 -35.16262 -33.70407 -32.86100 -32.23930 -29.72266 -28.91023 -27.28150 -26.21216 -26.06286 -25.41518 -24.94794 -23.14882 -22.92998 -20.57610 -20.41493 -19.50913 -18.78914 -17.93648 -17.16819 -16.83576 -16.52466 -16.12266 -15.65603 -15.46947 -15.11422 -14.84005 -14.52478 -14.23996 -14.02440 -13.87290 -13.78131 -13.57498 -13.14434 -13.11753 -12.86975 -12.75946 -12.60938 -12.48067 -12.22256 -11.90502 -11.87213 -11.65665 -11.51348 -11.46617 -10.96532 -10.71346 -10.70129 -10.63782 -10.29811 -10.18832 -10.14212 -9.65628 -9.38241 -9.27372 -8.81451 -8.63898 -8.60334 -8.53307 -7.93076 -6.51701 -4.24799 1.67191 2.29552 2.56736 2.91865 3.35079 3.39337 3.40518 3.56520 3.76456 4.10936 4.25335 4.29426 4.37183 4.43800 4.58192 4.65210 4.73880 4.83100 4.87056 4.90892 5.06860 5.11326 5.15323 5.20548 5.21650 5.38548 5.40878 5.42199 5.49359 5.54390 5.64561 5.66399 5.72620 5.87996 5.91009 5.96875 6.00984 6.06269 6.10947 6.18526 6.25712 6.26272 6.43337 6.46443 6.48899 6.65843 6.83476 6.95542 7.28832 7.60786 7.98728 8.27765 8.41800 8.67060 8.74740 9.48076 10.87728 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.001767 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.440776 B =15842.273201 C =16364.361670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.074 3.926 3 C -0.258 4.258 4 C 0.091 3.909 5 C 0.100 3.900 6 N -0.473 5.473 7 C 0.046 3.954 8 C -0.138 4.138 9 C -0.112 4.112 10 C -0.165 4.165 11 H 0.122 0.878 12 C 0.554 3.446 13 O -0.559 6.559 14 N -0.636 5.636 15 C 0.112 3.888 16 C 0.012 3.988 17 C -0.596 4.596 18 H 0.057 0.943 19 C 0.024 3.976 20 N -0.904 5.904 21 Si 1.072 2.928 22 H -0.287 1.287 23 H -0.287 1.287 24 H -0.284 1.284 25 C 0.098 3.902 26 C 0.072 3.928 27 N -0.286 5.286 28 N -0.375 5.375 29 C 0.101 3.899 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.270 0.730 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.986 -0.263 -5.686 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.287 4.287 4 C -0.076 4.076 5 C -0.030 4.030 6 N -0.197 5.197 7 C -0.082 4.082 8 C -0.139 4.139 9 C -0.149 4.149 10 C -0.187 4.187 11 H 0.140 0.860 12 C 0.343 3.657 13 O -0.439 6.439 14 N -0.370 5.370 15 C -0.009 4.009 16 C -0.007 4.007 17 C -0.634 4.634 18 H 0.075 0.925 19 C -0.181 4.181 20 N -0.538 5.538 21 Si 0.900 3.100 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.209 1.209 25 C -0.024 4.024 26 C -0.056 4.056 27 N -0.108 5.108 28 N -0.158 5.158 29 C -0.040 4.040 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.002 -1.227 -5.165 26.539 hybrid contribution -1.282 -0.121 -0.893 1.567 sum -27.284 -1.348 -6.058 27.981 Atomic orbital electron populations 1.20423 0.87489 1.03595 1.03270 1.21059 0.94549 0.87414 1.02237 1.21055 0.91586 0.98860 1.17208 1.21956 0.95289 0.91250 0.99084 1.20960 0.92744 0.97461 0.91879 1.68556 1.25856 1.05222 1.20027 1.23515 0.90779 0.96075 0.97826 1.22558 0.94453 0.99197 0.97695 1.22728 0.98308 1.03389 0.90476 1.22133 0.91056 0.98380 1.07141 0.86045 1.19247 0.80094 0.88973 0.77393 1.90634 1.66949 1.35717 1.50622 1.50339 1.08402 1.14242 1.63978 1.23335 0.84500 0.92788 1.00314 1.20658 0.92090 0.90083 0.97869 1.21844 1.04962 1.14601 1.21963 0.92515 1.25888 1.01038 0.92686 0.98497 1.70791 1.32798 1.30219 1.20027 0.83491 0.75070 0.76207 0.75258 1.21326 1.21337 1.20941 1.23830 0.85869 0.93309 0.99435 1.23346 0.89300 0.93438 0.99480 1.77402 0.96047 1.12573 1.24817 1.48423 1.03881 1.05891 1.57643 1.21809 1.00783 0.78109 1.03335 0.90259 0.89698 0.91352 0.83737 0.88959 0.92214 0.88791 0.90584 0.88140 0.87506 0.92076 0.90662 0.92813 0.91933 0.90295 0.92259 0.90213 0.89500 0.90804 0.89723 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.12 36.00 0.36 -0.11 16 2 C 0.07 0.73 6.93 -82.26 -0.57 0.16 16 3 C -0.26 -2.85 10.65 -40.01 -0.43 -3.28 16 4 C 0.09 1.19 6.77 -82.41 -0.56 0.63 16 5 C 0.10 1.17 5.36 -4.98 -0.03 1.14 16 6 N -0.47 -6.11 6.14 -243.04 -1.49 -7.60 16 7 C 0.05 0.52 7.96 -3.01 -0.02 0.50 16 8 C -0.14 -1.92 3.04 -154.91 -0.47 -2.39 16 9 C -0.11 -1.49 10.24 -26.92 -0.28 -1.77 16 10 C -0.17 -2.58 5.94 -92.03 -0.55 -3.12 16 11 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 12 C 0.55 10.97 7.84 -10.98 -0.09 10.89 16 13 O -0.56 -12.49 15.86 5.56 0.09 -12.40 16 14 N -0.64 -13.13 3.61 -178.43 -0.64 -13.78 16 15 C 0.11 2.41 8.39 -2.97 -0.02 2.38 16 16 C 0.01 0.29 3.09 -90.85 -0.28 0.01 16 17 C -0.60 -15.43 8.77 -34.44 -0.30 -15.73 16 18 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 19 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 20 N -0.90 -25.35 13.65 55.43 0.76 -24.59 16 21 Si 1.07 23.61 29.90 -169.99 -5.08 18.53 16 22 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.10 2.05 8.13 -2.98 -0.02 2.02 16 26 C 0.07 1.10 6.38 -3.02 -0.02 1.08 16 27 N -0.29 -4.11 12.58 33.67 0.42 -3.69 16 28 N -0.38 -4.19 4.01 -63.88 -0.26 -4.45 16 29 C 0.10 0.69 11.27 59.85 0.67 1.36 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.26 7.08 -51.93 -0.37 -0.11 16 33 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 38 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 42 H 0.05 1.35 7.61 -51.93 -0.40 0.95 16 43 H 0.27 7.48 7.04 -40.82 -0.29 7.19 16 44 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 1.33 7.35 -51.93 -0.38 0.95 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.32 7.05 -51.93 -0.37 -0.04 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 414.56 15.07 6.25 6.25 Total: -1.00 -33.20 414.56 -10.79 -43.98 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.13 Total: 3.42 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.69 Total: -5.67 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -1.21 Total: -54.11 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.08 Total: 18.53 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.20 -10.79 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277929801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.366 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds