Wall clock time and date at job start Wed Apr 1 2020 03:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35313 * 126.13336 * 2 1 4 4 C 1.39869 * 107.92519 * 180.14826 * 3 2 1 5 5 C 1.50699 * 125.90246 * 179.86151 * 4 3 2 6 6 N 1.46901 * 109.46636 * 94.71325 * 5 4 3 7 7 C 1.48108 * 110.99651 * 190.00174 * 6 5 4 8 8 C 1.53291 * 85.92327 * 222.87508 * 7 6 5 9 9 C 1.52471 * 128.80292 * 243.43191 * 8 7 6 10 10 C 1.52335 * 128.80253 * 163.13996 * 8 7 6 11 11 H 1.09002 * 117.51466 * 10.39637 * 10 8 7 12 12 C 1.50700 * 117.51591 * 225.31693 * 10 8 7 13 13 O 1.21281 * 120.00145 * 0.17048 * 12 10 8 14 14 N 1.34781 * 119.99459 * 180.16723 * 12 10 8 15 15 C 1.47583 * 134.48583 * 180.02562 * 14 12 10 16 16 C 1.53950 * 86.11474 * 155.36469 * 15 14 12 17 17 C 1.50695 * 113.74152 * 137.95242 * 16 15 14 18 18 H 1.07999 * 120.00538 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99661 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00030 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99863 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00044 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00037 * 21 19 17 25 25 C 1.47574 * 134.49483 * 0.02562 * 14 12 10 26 26 C 1.48098 * 111.00060 * 90.41949 * 6 5 4 27 27 N 1.30837 * 108.20102 * 359.59888 * 4 3 2 28 28 N 1.34955 * 126.12546 * 179.70835 * 2 1 3 29 29 C 1.46504 * 126.03489 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47201 * 270.29437 * 1 2 3 31 31 H 1.09004 * 109.46914 * 30.28670 * 1 2 3 32 32 H 1.08997 * 109.47489 * 150.29470 * 1 2 3 33 33 H 1.08007 * 126.03582 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.46840 * 334.71448 * 5 4 3 35 35 H 1.08999 * 109.46959 * 214.71326 * 5 4 3 36 36 H 1.08995 * 113.80023 * 108.62800 * 7 6 5 37 37 H 1.08999 * 113.90528 * 337.14052 * 7 6 5 38 38 H 1.09004 * 117.54633 * 134.72245 * 9 8 7 39 39 H 1.09000 * 117.50808 * 349.57308 * 9 8 7 40 40 H 1.08999 * 113.77005 * 41.06305 * 15 14 12 41 41 H 1.09004 * 113.87008 * 269.67247 * 15 14 12 42 42 H 1.09004 * 113.73556 * 269.15443 * 16 15 14 43 43 H 0.97001 * 119.99697 * 359.97438 * 20 19 17 44 44 H 1.09003 * 113.76927 * 90.34204 * 25 14 12 45 45 H 1.08991 * 113.77437 * 318.93659 * 25 14 12 46 46 H 1.08999 * 113.80081 * 22.86377 * 26 6 5 47 47 H 1.09003 * 113.80000 * 251.37363 * 26 6 5 48 48 H 1.08997 * 109.47421 * 269.97968 * 29 28 2 49 49 H 1.09002 * 109.47238 * 29.97896 * 29 28 2 50 50 H 1.08995 * 109.47163 * 149.97483 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 -0.0034 5 6 4.8544 1.5392 -0.0076 6 7 5.3216 1.7351 1.3713 7 6 6.3672 2.7823 1.4336 8 6 7.1017 1.8377 2.3918 9 6 7.4553 2.0510 3.8595 10 6 8.5635 1.8596 2.8199 11 1 9.1549 2.7337 2.5476 12 6 9.3064 0.5484 2.8276 13 8 8.7395 -0.4717 2.4977 14 7 10.6008 0.5096 3.2011 15 6 11.6098 -0.5603 3.3251 16 6 12.6586 0.5508 3.1363 17 6 13.8474 0.4252 4.0537 18 1 13.9018 -0.3913 4.7586 19 6 14.8658 1.3527 3.9933 20 7 14.8000 2.3467 3.1346 21 14 16.3392 1.1974 5.1311 22 1 17.3862 0.3731 4.4756 23 1 15.9194 0.5479 6.3988 24 1 16.8834 2.5478 5.4234 25 6 11.5784 1.5198 3.6503 26 6 6.3054 0.6953 1.7510 27 7 3.6334 -0.6525 0.0033 28 7 2.3026 -1.0901 0.0055 29 6 1.8538 -2.4846 0.0132 30 1 -0.3634 0.0053 1.0277 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3634 -0.8926 -0.5092 33 1 1.9741 2.1210 0.0004 34 1 4.6027 2.5047 -0.4466 35 1 5.6423 1.0674 -0.5947 36 1 6.0338 3.7095 1.8996 37 1 6.8878 2.9434 0.4897 38 1 7.2638 1.2285 4.5488 39 1 7.3175 3.0511 4.2704 40 1 11.5850 -1.2840 2.5104 41 1 11.6379 -1.0282 4.3091 42 1 12.9399 0.7164 2.0963 43 1 14.0350 2.4271 2.5436 44 1 11.5961 1.6641 4.7306 45 1 11.5286 2.4566 3.0955 46 1 6.8066 0.2325 0.9009 47 1 5.9232 -0.0309 2.4685 48 1 1.7432 -2.8251 1.0427 49 1 0.8949 -2.5606 -0.4996 50 1 2.5892 -3.1058 -0.4980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277929801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:37 Heat of formation + Delta-G solvation = 119.534594 kcal Electronic energy + Delta-G solvation = -29105.100544 eV Core-core repulsion = 25136.467314 eV Total energy + Delta-G solvation = -3968.633230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.28469 -41.69529 -40.64442 -38.77340 -36.31040 -34.85731 -34.53695 -32.87030 -31.03857 -30.23667 -27.91980 -27.25613 -27.21761 -26.93624 -26.64001 -24.57959 -23.95486 -22.18404 -21.29992 -20.33904 -20.14619 -19.29316 -19.02129 -18.16718 -17.53362 -17.19842 -16.70475 -16.63596 -16.43930 -16.25223 -15.69387 -15.54170 -15.45486 -14.94016 -14.81584 -14.47686 -14.27737 -13.99175 -13.91780 -13.75465 -13.54769 -13.49364 -13.31333 -13.25636 -13.22789 -13.05612 -12.80284 -12.73463 -12.48856 -12.44189 -11.88552 -11.77152 -11.54427 -11.50539 -11.41185 -11.24279 -11.03600 -10.55953 -10.46115 -10.13337 -9.85182 -9.63811 -9.42599 -8.61561 -6.34894 0.88691 1.41527 1.61112 1.62178 1.67283 1.71758 1.84001 1.85655 2.58371 2.62162 3.04876 3.11855 3.17373 3.44979 3.55402 3.65404 3.70869 3.82117 3.94921 4.06643 4.16457 4.19992 4.25911 4.29190 4.32210 4.40049 4.41017 4.44170 4.50177 4.50631 4.58372 4.61651 4.67925 4.71673 4.74318 4.75155 4.77220 4.80943 4.87343 4.90161 4.97188 5.03148 5.06297 5.13696 5.35270 5.37625 5.65850 5.94426 5.99921 6.17886 6.19060 6.58163 6.77357 6.79375 7.09870 7.44621 8.78904 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.001767 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.440776 B =15842.273201 C =16364.361670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.079 3.921 3 C -0.279 4.279 4 C 0.073 3.927 5 C 0.101 3.899 6 N -0.474 5.474 7 C 0.059 3.941 8 C -0.138 4.138 9 C -0.094 4.094 10 C -0.178 4.178 11 H 0.139 0.861 12 C 0.547 3.453 13 O -0.591 6.591 14 N -0.639 5.639 15 C 0.114 3.886 16 C 0.000 4.000 17 C -0.604 4.604 18 H 0.054 0.946 19 C -0.020 4.020 20 N -0.929 5.929 21 Si 1.116 2.884 22 H -0.279 1.279 23 H -0.271 1.271 24 H -0.284 1.284 25 C 0.116 3.884 26 C 0.071 3.929 27 N -0.342 5.342 28 N -0.383 5.383 29 C 0.092 3.908 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.120 0.880 35 H 0.046 0.954 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.120 0.880 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.103 1.336 -5.040 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C -0.308 4.308 4 C -0.092 4.092 5 C -0.029 4.029 6 N -0.197 5.197 7 C -0.068 4.068 8 C -0.140 4.140 9 C -0.131 4.131 10 C -0.200 4.200 11 H 0.157 0.843 12 C 0.339 3.661 13 O -0.473 6.473 14 N -0.372 5.372 15 C -0.008 4.008 16 C -0.019 4.019 17 C -0.642 4.642 18 H 0.072 0.928 19 C -0.220 4.220 20 N -0.564 5.564 21 Si 0.939 3.061 22 H -0.205 1.205 23 H -0.196 1.196 24 H -0.210 1.210 25 C -0.006 4.006 26 C -0.057 4.057 27 N -0.166 5.166 28 N -0.166 5.166 29 C -0.048 4.048 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.180 0.820 34 H 0.138 0.862 35 H 0.064 0.936 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.162 0.838 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.138 0.862 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.139 0.362 -4.523 28.503 hybrid contribution -0.731 -0.755 -1.145 1.554 sum -28.870 -0.393 -5.668 29.424 Atomic orbital electron populations 1.20587 0.84050 1.05355 1.04433 1.21799 0.96543 0.86592 0.99909 1.21376 0.90932 1.00273 1.18209 1.22254 0.96533 0.91205 0.99252 1.21026 0.92168 0.98601 0.91061 1.68526 1.25536 1.04640 1.20967 1.23625 0.89455 0.96056 0.97685 1.22739 0.92910 0.99476 0.98855 1.22884 0.95561 1.04898 0.89786 1.22101 0.91657 0.96273 1.09940 0.84347 1.20033 0.79611 0.90359 0.76094 1.90623 1.67430 1.37464 1.51793 1.50342 1.08887 1.13638 1.64326 1.23226 0.84446 0.92619 1.00522 1.20608 0.92583 0.92333 0.96370 1.22118 1.05857 1.14302 1.21950 0.92750 1.27150 1.03542 0.92186 0.99120 1.70897 1.32854 1.31506 1.21186 0.82914 0.72532 0.76340 0.74359 1.20460 1.19580 1.20963 1.23548 0.84400 0.93109 0.99532 1.23096 0.90427 0.93852 0.98336 1.77306 0.98555 1.13685 1.27011 1.48772 1.03155 1.07565 1.57132 1.22124 1.02168 0.76309 1.04233 0.89180 0.88135 0.89429 0.81967 0.86163 0.93586 0.85871 0.89400 0.89357 0.83842 0.92291 0.90130 0.95042 0.92926 0.90007 0.91136 0.92688 0.92314 0.90171 0.86191 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.12 71.23 0.72 0.07 16 2 C 0.08 1.44 6.93 41.40 0.29 1.73 16 3 C -0.28 -5.89 10.65 21.99 0.23 -5.66 16 4 C 0.07 1.93 6.77 43.10 0.29 2.22 16 5 C 0.10 2.36 5.36 85.56 0.46 2.82 16 6 N -0.47 -11.92 6.14 -922.84 -5.67 -17.59 16 7 C 0.06 1.20 7.96 86.17 0.69 1.88 16 8 C -0.14 -3.70 3.04 -52.35 -0.16 -3.86 16 9 C -0.09 -2.32 10.24 30.47 0.31 -2.01 16 10 C -0.18 -5.35 5.94 -11.71 -0.07 -5.42 16 11 H 0.14 3.69 8.14 -2.39 -0.02 3.67 16 12 C 0.55 21.90 7.84 87.66 0.69 22.59 16 13 O -0.59 -27.33 15.86 -3.03 -0.05 -27.38 16 14 N -0.64 -26.52 3.61 -836.80 -3.02 -29.54 16 15 C 0.11 4.98 8.39 86.48 0.73 5.70 16 16 C 0.00 0.02 3.09 -10.88 -0.03 -0.02 16 17 C -0.60 -31.43 8.77 25.60 0.22 -31.20 16 18 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 19 C -0.02 -1.06 5.46 84.65 0.46 -0.60 16 20 N -0.93 -52.38 13.65 21.45 0.29 -52.09 16 21 Si 1.12 46.96 29.90 68.60 2.05 49.02 16 22 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.12 4.83 8.13 86.48 0.70 5.53 16 26 C 0.07 2.26 6.38 86.17 0.55 2.81 16 27 N -0.34 -10.24 12.58 -47.39 -0.60 -10.84 16 28 N -0.38 -8.46 4.01 -356.03 -1.43 -9.89 16 29 C 0.09 1.19 11.27 127.77 1.44 2.63 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.34 7.08 -2.39 -0.02 0.32 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.12 2.04 8.08 -2.39 -0.02 2.02 16 35 H 0.05 1.18 7.38 -2.39 -0.02 1.16 16 36 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 1.59 7.93 -2.39 -0.02 1.57 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.08 3.40 8.09 -2.38 -0.02 3.38 16 42 H 0.03 1.63 7.61 -2.38 -0.02 1.61 16 43 H 0.26 14.70 7.04 -92.71 -0.65 14.05 16 44 H 0.08 3.36 8.09 -2.39 -0.02 3.34 16 45 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.05 1.99 7.35 -2.39 -0.02 1.97 16 47 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.12 0.64 7.05 -2.39 -0.02 0.62 16 50 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.68 414.56 0.15 -74.53 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 1.04 Total: 24.56 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 7.52 Total: -0.79 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -10.42 Total: -119.94 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.05 Total: 49.02 kcal Total: -74.68 0.15 -74.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277929801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.064 kcal (2) G-P(sol) polarization free energy of solvation -74.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds