Wall clock time and date at job start Wed Apr 1 2020 03:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35315 * 126.12238 * 2 1 4 4 C 1.39872 * 107.91205 * 180.02562 * 3 2 1 5 5 C 1.50704 * 125.89615 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46884 * 94.99765 * 5 4 3 7 7 C 1.48108 * 111.00118 * 189.99820 * 6 5 4 8 8 C 1.53283 * 85.92471 * 222.87799 * 7 6 5 9 9 C 1.52484 * 128.83332 * 243.45607 * 8 7 6 10 10 C 1.52336 * 128.80025 * 163.14570 * 8 7 6 11 11 H 1.09000 * 117.51237 * 225.35813 * 10 8 7 12 12 C 1.50703 * 117.51915 * 10.43583 * 10 8 7 13 13 O 1.21277 * 119.99648 * 359.83683 * 12 10 8 14 14 N 1.34773 * 119.99975 * 179.83053 * 12 10 8 15 15 C 1.47580 * 134.49117 * 180.02562 * 14 12 10 16 16 C 1.53945 * 86.11705 * 155.36394 * 15 14 12 17 17 C 1.50697 * 113.74030 * 137.95460 * 16 15 14 18 18 H 1.07991 * 120.00449 * 359.71995 * 17 16 15 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 16 22 22 H 1.48498 * 109.47416 * 59.99812 * 21 19 17 23 23 H 1.48508 * 109.46609 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46903 * 299.99397 * 21 19 17 25 25 C 1.47576 * 134.49593 * 0.02562 * 14 12 10 26 26 C 1.48103 * 110.99806 * 90.41723 * 6 5 4 27 27 N 1.30831 * 108.20695 * 0.26384 * 4 3 2 28 28 N 1.34945 * 126.12543 * 180.02562 * 2 1 3 29 29 C 1.46504 * 126.03594 * 359.95804 * 28 2 1 30 30 H 1.09002 * 109.47002 * 89.97188 * 1 2 3 31 31 H 1.08993 * 109.46867 * 209.97387 * 1 2 3 32 32 H 1.08998 * 109.46880 * 329.97729 * 1 2 3 33 33 H 1.07993 * 126.04576 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47231 * 335.00372 * 5 4 3 35 35 H 1.08991 * 109.47522 * 214.99937 * 5 4 3 36 36 H 1.09006 * 113.79578 * 108.62418 * 7 6 5 37 37 H 1.09002 * 113.80099 * 337.13162 * 7 6 5 38 38 H 1.09000 * 117.50677 * 134.72134 * 9 8 7 39 39 H 1.08999 * 117.54195 * 349.56239 * 9 8 7 40 40 H 1.08999 * 113.76879 * 41.05855 * 15 14 12 41 41 H 1.09009 * 113.76877 * 269.66448 * 15 14 12 42 42 H 1.09003 * 113.73489 * 269.15303 * 16 15 14 43 43 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 44 44 H 1.09004 * 113.77109 * 90.33293 * 25 14 12 45 45 H 1.09000 * 113.76842 * 318.93873 * 25 14 12 46 46 H 1.08997 * 113.80167 * 22.86883 * 26 6 5 47 47 H 1.09004 * 113.79620 * 251.37467 * 26 6 5 48 48 H 1.08992 * 109.46678 * 90.00790 * 29 28 2 49 49 H 1.09008 * 109.46557 * 210.00431 * 29 28 2 50 50 H 1.08995 * 109.47319 * 330.00258 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8543 1.5395 -0.0013 6 7 5.3224 1.7290 1.3781 7 6 6.3680 2.7759 1.4448 8 6 7.1030 1.8269 2.3981 9 6 7.4574 2.0324 3.8668 10 6 8.5651 1.8469 2.8255 11 1 9.1026 0.8987 2.8256 12 6 9.3823 3.0577 2.4551 13 8 8.8720 3.9676 1.8366 14 7 10.6802 3.1293 2.8112 15 6 11.7499 4.1289 2.6254 16 6 12.3983 3.5141 3.8790 17 6 13.8915 3.3438 3.7683 18 1 14.4033 3.6401 2.8647 19 6 14.6036 2.8047 4.8188 20 7 13.9804 2.4443 5.9194 21 14 16.4535 2.5864 4.6786 22 1 17.0922 3.9079 4.4529 23 1 16.9780 1.9904 5.9337 24 1 16.7607 1.6867 3.5378 25 6 11.6024 2.2399 3.5434 26 6 6.3065 0.6874 1.7525 27 7 3.6334 -0.6524 -0.0067 28 7 2.3027 -1.0900 -0.0005 29 6 1.8539 -2.4846 -0.0002 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 1.9741 2.1211 0.0004 34 1 4.6024 2.5070 -0.4356 35 1 5.6419 1.0705 -0.5910 36 1 6.0347 3.7010 1.9153 37 1 6.8871 2.9399 0.5004 38 1 7.2662 1.2059 4.5513 39 1 7.3201 3.0302 4.2836 40 1 11.4181 5.1581 2.7622 41 1 12.3318 3.9857 1.7148 42 1 12.0929 3.9918 4.8100 43 1 14.4814 2.0654 6.6585 44 1 12.1409 1.5416 2.9025 45 1 11.1528 1.7608 4.4132 46 1 6.8072 0.2286 0.8999 47 1 5.9246 -0.0420 2.4668 48 1 1.7421 -2.8304 -1.0278 49 1 2.5901 -3.1030 0.5133 50 1 0.8957 -2.5579 0.5141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277929804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:42 Heat of formation + Delta-G solvation = 144.816249 kcal Electronic energy + Delta-G solvation = -28905.887596 eV Core-core repulsion = 24938.350661 eV Total energy + Delta-G solvation = -3967.536936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.48606 -40.40387 -39.00112 -37.01106 -35.10496 -33.70531 -32.65875 -32.26126 -29.72995 -29.00922 -27.29844 -26.30374 -25.96505 -25.48808 -25.06934 -23.09497 -22.90005 -20.57878 -20.14496 -19.51218 -18.62794 -17.80504 -16.98574 -16.80845 -16.35320 -16.09037 -15.61202 -15.42930 -15.22064 -14.74524 -14.52775 -14.33834 -14.10323 -13.96736 -13.64673 -13.52544 -13.08970 -13.00424 -12.82676 -12.69413 -12.60165 -12.42655 -12.22251 -11.92820 -11.82168 -11.57224 -11.48028 -11.21902 -10.96231 -10.80438 -10.70983 -10.62056 -10.40361 -10.25451 -10.07941 -9.57076 -9.31449 -9.26663 -8.95365 -8.72016 -8.65833 -8.57209 -7.81844 -6.17562 -4.23210 1.63762 2.25985 2.55728 2.98867 3.25507 3.30986 3.32812 3.50581 3.81622 4.13301 4.27126 4.31655 4.33030 4.40237 4.63143 4.65364 4.72993 4.80060 4.90066 4.97217 5.02159 5.08127 5.12807 5.26868 5.29332 5.37438 5.39746 5.48785 5.56387 5.62176 5.65116 5.73082 5.80876 5.92336 5.99785 6.04611 6.09411 6.13544 6.23157 6.28577 6.31425 6.40527 6.46832 6.60148 6.69938 6.80495 6.84668 6.98509 7.56005 7.57117 7.79962 8.17762 8.54697 8.80034 8.81810 9.43497 10.91969 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028604 B = 0.001681 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.655179 B =16654.111633 C =17090.086130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.075 3.925 3 C -0.257 4.257 4 C 0.094 3.906 5 C 0.100 3.900 6 N -0.473 5.473 7 C 0.066 3.934 8 C -0.137 4.137 9 C -0.111 4.111 10 C -0.164 4.164 11 H 0.120 0.880 12 C 0.554 3.446 13 O -0.564 6.564 14 N -0.636 5.636 15 C 0.103 3.897 16 C 0.034 3.966 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.068 3.932 20 N -0.886 5.886 21 Si 0.895 3.105 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.104 3.896 26 C 0.052 3.948 27 N -0.291 5.291 28 N -0.376 5.376 29 C 0.102 3.898 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.264 0.736 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.267 -8.138 -9.759 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.286 4.286 4 C -0.073 4.073 5 C -0.031 4.031 6 N -0.196 5.196 7 C -0.062 4.062 8 C -0.139 4.139 9 C -0.148 4.148 10 C -0.186 4.186 11 H 0.138 0.862 12 C 0.343 3.657 13 O -0.445 6.445 14 N -0.369 5.369 15 C -0.019 4.019 16 C 0.015 3.985 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.135 4.135 20 N -0.523 5.523 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.018 4.018 26 C -0.077 4.077 27 N -0.114 5.114 28 N -0.159 5.159 29 C -0.040 4.040 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.163 0.837 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.659 -8.898 -9.607 28.807 hybrid contribution 1.245 0.086 -0.537 1.359 sum -24.414 -8.812 -10.144 27.868 Atomic orbital electron populations 1.20430 0.87471 1.03771 1.03145 1.21057 0.94557 0.87389 1.02156 1.21090 0.91643 0.98949 1.16951 1.21993 0.95393 0.91195 0.98716 1.20968 0.92545 0.97596 0.91953 1.68543 1.26006 1.04998 1.20057 1.23329 0.89204 0.95473 0.98198 1.22542 0.94417 0.98826 0.98097 1.22729 0.98275 1.03704 0.90137 1.22142 0.90525 0.99261 1.06658 0.86181 1.19210 0.81242 0.86657 0.78550 1.90603 1.71325 1.40194 1.42364 1.50382 1.07319 1.24217 1.54969 1.23495 0.84943 0.92513 1.00920 1.20494 0.94682 0.90548 0.92809 1.20940 0.91116 1.42504 1.01290 0.91964 1.25022 0.98645 0.94865 0.94997 1.69940 1.36154 1.41393 1.04803 0.86605 0.85096 0.78598 0.77421 1.20056 1.21235 1.20122 1.23711 0.87514 0.97181 0.93420 1.23547 0.90753 0.94126 0.99234 1.77322 0.96161 1.12556 1.25363 1.48392 1.03878 1.05839 1.57829 1.21797 1.00912 0.78132 1.03126 0.90339 0.91313 0.89605 0.83678 0.88832 0.92288 0.88840 0.90264 0.87668 0.87925 0.92108 0.90914 0.91695 0.92598 0.90836 0.91750 0.90692 0.89417 0.90959 0.89319 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.12 36.01 0.36 -0.08 16 2 C 0.08 0.70 6.93 -82.26 -0.57 0.13 16 3 C -0.26 -2.79 10.65 -40.01 -0.43 -3.21 16 4 C 0.09 1.16 6.77 -82.41 -0.56 0.61 16 5 C 0.10 1.16 5.36 -4.97 -0.03 1.13 16 6 N -0.47 -6.13 6.14 -243.04 -1.49 -7.62 16 7 C 0.07 0.91 6.38 -3.01 -0.02 0.90 16 8 C -0.14 -1.93 3.04 -154.91 -0.47 -2.41 16 9 C -0.11 -1.54 10.24 -26.91 -0.28 -1.82 16 10 C -0.16 -2.59 5.94 -92.03 -0.55 -3.14 16 11 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 12 C 0.55 10.86 7.84 -10.99 -0.09 10.78 16 13 O -0.56 -12.21 15.86 5.56 0.09 -12.12 16 14 N -0.64 -13.07 3.61 -178.43 -0.64 -13.72 16 15 C 0.10 2.17 8.39 -2.98 -0.02 2.14 16 16 C 0.03 0.79 3.62 -90.85 -0.33 0.46 16 17 C -0.52 -13.23 8.77 -34.44 -0.30 -13.53 16 18 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -23.99 13.27 55.43 0.74 -23.26 16 21 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 C 0.10 2.19 8.17 -2.98 -0.02 2.17 16 26 C 0.05 0.66 7.97 -3.01 -0.02 0.64 16 27 N -0.29 -3.81 12.58 33.67 0.42 -3.39 16 28 N -0.38 -3.86 4.01 -63.88 -0.26 -4.11 16 29 C 0.10 0.59 11.27 59.85 0.67 1.26 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.24 7.08 -51.93 -0.37 -0.12 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.06 0.68 7.38 -51.93 -0.38 0.30 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.15 7.79 -51.93 -0.40 0.74 16 38 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.48 8.09 -51.92 -0.42 1.06 16 42 H 0.06 1.66 8.12 -51.93 -0.42 1.24 16 43 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.08 0.93 7.48 -51.93 -0.39 0.54 16 47 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 50 H 0.08 0.28 7.05 -51.93 -0.37 -0.09 16 LS Contribution 416.16 15.07 6.27 6.27 Total: -1.00 -31.56 416.16 -10.85 -42.40 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.21 Total: 2.82 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.74 Total: -2.30 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -1.23 Total: -52.10 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.56 -10.85 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277929804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.220 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds