Wall clock time and date at job start Wed Apr 1 2020 03:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35315 * 126.12238 * 2 1 4 4 C 1.39872 * 107.91205 * 180.02562 * 3 2 1 5 5 C 1.50704 * 125.89615 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46884 * 94.99765 * 5 4 3 7 7 C 1.48108 * 111.00118 * 189.99820 * 6 5 4 8 8 C 1.53283 * 85.92471 * 222.87799 * 7 6 5 9 9 C 1.52484 * 128.83332 * 243.45607 * 8 7 6 10 10 C 1.52336 * 128.80025 * 163.14570 * 8 7 6 11 11 H 1.09000 * 117.51237 * 225.35813 * 10 8 7 12 12 C 1.50703 * 117.51915 * 10.43583 * 10 8 7 13 13 O 1.21277 * 119.99648 * 359.83683 * 12 10 8 14 14 N 1.34773 * 119.99975 * 179.83053 * 12 10 8 15 15 C 1.47580 * 134.49117 * 180.02562 * 14 12 10 16 16 C 1.53945 * 86.11705 * 155.36394 * 15 14 12 17 17 C 1.50697 * 113.74030 * 137.95460 * 16 15 14 18 18 H 1.07991 * 120.00449 * 359.71995 * 17 16 15 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 16 22 22 H 1.48498 * 109.47416 * 59.99812 * 21 19 17 23 23 H 1.48508 * 109.46609 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46903 * 299.99397 * 21 19 17 25 25 C 1.47576 * 134.49593 * 0.02562 * 14 12 10 26 26 C 1.48103 * 110.99806 * 90.41723 * 6 5 4 27 27 N 1.30831 * 108.20695 * 0.26384 * 4 3 2 28 28 N 1.34945 * 126.12543 * 180.02562 * 2 1 3 29 29 C 1.46504 * 126.03594 * 359.95804 * 28 2 1 30 30 H 1.09002 * 109.47002 * 89.97188 * 1 2 3 31 31 H 1.08993 * 109.46867 * 209.97387 * 1 2 3 32 32 H 1.08998 * 109.46880 * 329.97729 * 1 2 3 33 33 H 1.07993 * 126.04576 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47231 * 335.00372 * 5 4 3 35 35 H 1.08991 * 109.47522 * 214.99937 * 5 4 3 36 36 H 1.09006 * 113.79578 * 108.62418 * 7 6 5 37 37 H 1.09002 * 113.80099 * 337.13162 * 7 6 5 38 38 H 1.09000 * 117.50677 * 134.72134 * 9 8 7 39 39 H 1.08999 * 117.54195 * 349.56239 * 9 8 7 40 40 H 1.08999 * 113.76879 * 41.05855 * 15 14 12 41 41 H 1.09009 * 113.76877 * 269.66448 * 15 14 12 42 42 H 1.09003 * 113.73489 * 269.15303 * 16 15 14 43 43 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 44 44 H 1.09004 * 113.77109 * 90.33293 * 25 14 12 45 45 H 1.09000 * 113.76842 * 318.93873 * 25 14 12 46 46 H 1.08997 * 113.80167 * 22.86883 * 26 6 5 47 47 H 1.09004 * 113.79620 * 251.37467 * 26 6 5 48 48 H 1.08992 * 109.46678 * 90.00790 * 29 28 2 49 49 H 1.09008 * 109.46557 * 210.00431 * 29 28 2 50 50 H 1.08995 * 109.47319 * 330.00258 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8543 1.5395 -0.0013 6 7 5.3224 1.7290 1.3781 7 6 6.3680 2.7759 1.4448 8 6 7.1030 1.8269 2.3981 9 6 7.4574 2.0324 3.8668 10 6 8.5651 1.8469 2.8255 11 1 9.1026 0.8987 2.8256 12 6 9.3823 3.0577 2.4551 13 8 8.8720 3.9676 1.8366 14 7 10.6802 3.1293 2.8112 15 6 11.7499 4.1289 2.6254 16 6 12.3983 3.5141 3.8790 17 6 13.8915 3.3438 3.7683 18 1 14.4033 3.6401 2.8647 19 6 14.6036 2.8047 4.8188 20 7 13.9804 2.4443 5.9194 21 14 16.4535 2.5864 4.6786 22 1 17.0922 3.9079 4.4529 23 1 16.9780 1.9904 5.9337 24 1 16.7607 1.6867 3.5378 25 6 11.6024 2.2399 3.5434 26 6 6.3065 0.6874 1.7525 27 7 3.6334 -0.6524 -0.0067 28 7 2.3027 -1.0900 -0.0005 29 6 1.8539 -2.4846 -0.0002 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 1.9741 2.1211 0.0004 34 1 4.6024 2.5070 -0.4356 35 1 5.6419 1.0705 -0.5910 36 1 6.0347 3.7010 1.9153 37 1 6.8871 2.9399 0.5004 38 1 7.2662 1.2059 4.5513 39 1 7.3201 3.0302 4.2836 40 1 11.4181 5.1581 2.7622 41 1 12.3318 3.9857 1.7148 42 1 12.0929 3.9918 4.8100 43 1 14.4814 2.0654 6.6585 44 1 12.1409 1.5416 2.9025 45 1 11.1528 1.7608 4.4132 46 1 6.8072 0.2286 0.8999 47 1 5.9246 -0.0420 2.4668 48 1 1.7421 -2.8304 -1.0278 49 1 2.5901 -3.1030 0.5133 50 1 0.8957 -2.5579 0.5141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277929804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:40 Heat of formation + Delta-G solvation = 125.090571 kcal Electronic energy + Delta-G solvation = -28906.742966 eV Core-core repulsion = 24938.350661 eV Total energy + Delta-G solvation = -3968.392305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.25823 -41.61952 -40.51228 -38.60298 -36.25029 -34.62238 -34.49360 -32.84378 -31.09804 -30.25155 -27.89711 -27.45275 -27.18063 -26.83979 -26.66826 -24.49329 -23.91713 -21.85319 -21.28023 -20.30020 -19.97767 -19.18369 -18.76906 -17.99692 -17.51301 -17.08217 -16.73764 -16.52460 -16.42192 -16.38524 -15.98239 -15.42944 -15.14823 -14.88589 -14.70175 -14.45428 -14.07148 -14.03094 -13.87096 -13.79009 -13.37267 -13.32453 -13.29669 -13.22333 -13.12823 -12.99489 -12.76307 -12.71097 -12.57603 -12.42994 -12.21456 -11.73622 -11.54350 -11.45716 -11.28984 -11.19867 -11.12073 -10.65765 -10.48555 -10.08120 -9.79061 -9.51424 -9.40313 -8.15043 -6.26236 0.90202 1.49080 1.49271 1.50327 1.57366 1.64526 1.75128 1.96860 2.46934 2.63800 3.08596 3.15302 3.18035 3.48652 3.59288 3.68805 3.73920 3.89315 3.97254 4.20641 4.23881 4.30310 4.33060 4.38195 4.41283 4.45277 4.48935 4.51843 4.58812 4.63572 4.64918 4.67208 4.73334 4.77015 4.81798 4.84604 4.88153 4.90252 4.94779 4.99004 5.01477 5.08465 5.14701 5.16199 5.36353 5.60842 5.67087 5.82712 5.96482 6.19632 6.24092 6.78157 6.81350 6.91591 7.21134 7.43639 8.94359 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028604 B = 0.001681 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.655179 B =16654.111633 C =17090.086130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.082 3.918 3 C -0.284 4.284 4 C 0.077 3.923 5 C 0.102 3.898 6 N -0.474 5.474 7 C 0.066 3.934 8 C -0.134 4.134 9 C -0.101 4.101 10 C -0.176 4.176 11 H 0.133 0.867 12 C 0.550 3.450 13 O -0.587 6.587 14 N -0.640 5.640 15 C 0.108 3.892 16 C 0.023 3.977 17 C -0.532 4.532 18 H 0.064 0.936 19 C 0.022 3.978 20 N -0.917 5.917 21 Si 0.957 3.043 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.269 1.269 25 C 0.120 3.880 26 C 0.061 3.939 27 N -0.330 5.330 28 N -0.380 5.380 29 C 0.092 3.908 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.817 -9.539 -10.260 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C -0.314 4.314 4 C -0.089 4.089 5 C -0.028 4.028 6 N -0.197 5.197 7 C -0.062 4.062 8 C -0.135 4.135 9 C -0.138 4.138 10 C -0.198 4.198 11 H 0.151 0.849 12 C 0.341 3.659 13 O -0.469 6.469 14 N -0.372 5.372 15 C -0.014 4.014 16 C 0.004 3.996 17 C -0.570 4.570 18 H 0.083 0.917 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.783 3.217 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.002 4.002 26 C -0.067 4.067 27 N -0.154 5.154 28 N -0.164 5.164 29 C -0.048 4.048 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.172 0.828 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -27.216 -10.308 -10.121 30.813 hybrid contribution 1.615 0.535 -0.416 1.752 sum -25.601 -9.773 -10.537 29.359 Atomic orbital electron populations 1.20584 0.84249 1.05170 1.04521 1.21705 0.96431 0.86622 0.99885 1.21361 0.91437 1.00129 1.18453 1.22104 0.96070 0.91324 0.99356 1.20960 0.92543 0.98180 0.91108 1.68522 1.25508 1.04613 1.21078 1.23239 0.89596 0.95524 0.97796 1.22670 0.92911 0.99584 0.98348 1.22853 0.96280 1.04321 0.90345 1.22096 0.90952 0.97875 1.08839 0.84940 1.19835 0.80809 0.87462 0.77754 1.90588 1.71537 1.41476 1.43343 1.50376 1.07755 1.23821 1.55292 1.23379 0.85178 0.92736 1.00106 1.20404 0.94389 0.92256 0.92596 1.21244 0.92232 1.42154 1.01408 0.91732 1.25737 1.02678 0.94699 0.94703 1.70047 1.37623 1.42369 1.05439 0.85627 0.80167 0.78563 0.77388 1.19737 1.21239 1.19383 1.23440 0.87116 0.96162 0.93496 1.23512 0.90261 0.93736 0.99217 1.77218 0.98342 1.12949 1.26899 1.48760 1.03147 1.07491 1.56957 1.22148 1.02116 0.76076 1.04472 0.88808 0.89391 0.88732 0.82812 0.87854 0.92626 0.89574 0.91095 0.85120 0.88659 0.92016 0.90019 0.94552 0.92657 0.90386 0.91627 0.90418 0.88869 0.89607 0.89599 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.12 71.24 0.72 0.12 16 2 C 0.08 1.37 6.93 41.41 0.29 1.66 16 3 C -0.28 -5.96 10.65 21.99 0.23 -5.73 16 4 C 0.08 1.90 6.77 43.10 0.29 2.19 16 5 C 0.10 2.38 5.36 85.56 0.46 2.84 16 6 N -0.47 -12.09 6.14 -922.86 -5.67 -17.75 16 7 C 0.07 1.85 6.38 86.16 0.55 2.40 16 8 C -0.13 -3.66 3.04 -52.35 -0.16 -3.82 16 9 C -0.10 -2.67 10.24 30.48 0.31 -2.36 16 10 C -0.18 -5.41 5.94 -11.71 -0.07 -5.48 16 11 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 12 C 0.55 21.48 7.84 87.66 0.69 22.17 16 13 O -0.59 -25.53 15.86 -3.02 -0.05 -25.58 16 14 N -0.64 -26.24 3.61 -836.83 -3.02 -29.26 16 15 C 0.11 4.56 8.39 86.48 0.73 5.29 16 16 C 0.02 1.08 3.62 -10.88 -0.04 1.04 16 17 C -0.53 -27.10 8.77 25.60 0.22 -26.87 16 18 H 0.06 3.19 7.81 -2.92 -0.02 3.16 16 19 C 0.02 1.15 5.46 84.66 0.46 1.61 16 20 N -0.92 -49.98 13.27 21.45 0.28 -49.70 16 21 Si 0.96 40.85 29.54 68.60 2.03 42.87 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 C 0.12 5.06 8.17 86.48 0.71 5.76 16 26 C 0.06 1.50 7.97 86.17 0.69 2.19 16 27 N -0.33 -8.52 12.58 -47.38 -0.60 -9.11 16 28 N -0.38 -7.25 4.01 -356.02 -1.43 -8.67 16 29 C 0.09 0.87 11.27 127.77 1.44 2.31 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.29 7.08 -2.39 -0.02 0.27 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.10 2.12 8.08 -2.39 -0.02 2.10 16 35 H 0.06 1.31 7.38 -2.39 -0.02 1.29 16 36 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.07 2.08 7.79 -2.39 -0.02 2.07 16 38 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.08 3.29 8.09 -2.38 -0.02 3.27 16 42 H 0.04 1.92 8.12 -2.39 -0.02 1.90 16 43 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 44 H 0.08 3.21 8.09 -2.38 -0.02 3.19 16 45 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.08 1.88 7.48 -2.39 -0.02 1.86 16 47 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.11 0.37 7.05 -2.39 -0.02 0.35 16 Total: -1.00 -67.85 416.16 0.00 -67.85 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.93 Total: 24.04 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 7.52 Total: 5.32 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -10.42 Total: -114.50 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.05 Total: -25.58 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -67.85 0.00 -67.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277929804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.945 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds