Wall clock time and date at job start Wed Apr 1 2020 03:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47044 * 88.36203 * 3 2 1 5 5 C 1.34771 * 120.00177 * 90.00034 * 4 3 2 6 6 O 1.21288 * 119.99981 * 179.97438 * 5 4 3 7 7 C 1.50704 * 120.00228 * 359.97438 * 5 4 3 8 8 N 1.46496 * 109.47400 * 180.02562 * 7 5 4 9 9 N 1.40084 * 126.03539 * 90.02367 * 8 7 5 10 10 C 1.30836 * 108.20699 * 180.02562 * 9 8 7 11 11 C 1.50698 * 125.90175 * 179.97438 * 10 9 8 12 12 C 1.39876 * 108.19797 * 0.24191 * 10 9 8 13 13 C 1.34946 * 126.03818 * 270.02904 * 8 7 5 14 14 C 1.50698 * 126.12901 * 359.97438 * 13 8 7 15 15 C 1.46500 * 119.99815 * 269.99734 * 4 3 2 16 16 C 1.53049 * 109.45842 * 60.02971 * 15 4 3 17 17 C 1.53197 * 109.30827 * 178.60143 * 16 15 4 18 18 N 1.46917 * 108.76801 * 54.65474 * 17 16 15 19 19 C 1.36945 * 120.63323 * 126.35936 * 18 17 16 20 20 H 1.08004 * 119.99401 * 331.85597 * 19 18 17 21 21 C 1.38805 * 120.00238 * 151.85507 * 19 18 17 22 22 N 1.31617 * 119.99980 * 343.08034 * 21 19 18 23 23 Si 1.86801 * 120.00028 * 163.07051 * 21 19 18 24 24 H 1.48510 * 109.46785 * 60.00564 * 23 21 19 25 25 H 1.48498 * 109.47229 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47272 * 300.00622 * 23 21 19 27 27 C 1.46923 * 118.74211 * 306.38266 * 18 17 16 28 28 C 1.53040 * 109.46330 * 299.97328 * 15 4 3 29 29 H 4.40639 * 5.51458 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.46858 * 328.36132 * 3 2 1 31 31 H 1.09000 * 109.46909 * 208.36102 * 3 2 1 32 32 H 1.08997 * 109.46630 * 59.99843 * 7 5 4 33 33 H 1.08996 * 109.47163 * 300.00421 * 7 5 4 34 34 H 1.09006 * 109.47300 * 90.02517 * 11 10 9 35 35 H 1.09004 * 109.47293 * 210.01700 * 11 10 9 36 36 H 1.08997 * 109.47133 * 330.02199 * 11 10 9 37 37 H 1.08000 * 126.03684 * 179.72257 * 12 10 9 38 38 H 1.09003 * 109.47048 * 90.00063 * 14 13 8 39 39 H 1.08992 * 109.47434 * 210.00241 * 14 13 8 40 40 H 1.09000 * 109.46907 * 330.00504 * 14 13 8 41 41 H 1.09000 * 109.46432 * 179.97438 * 15 4 3 42 42 H 1.08999 * 109.49695 * 298.56443 * 16 15 4 43 43 H 1.09001 * 109.49774 * 58.66374 * 16 15 4 44 44 H 1.08995 * 109.59662 * 294.86300 * 17 16 15 45 45 H 1.09006 * 109.69505 * 174.50628 * 17 16 15 46 46 H 0.97000 * 119.99802 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58649 * 293.82317 * 27 18 17 48 48 H 1.08998 * 109.70891 * 173.46414 * 27 18 17 49 49 H 1.08998 * 109.49626 * 301.33943 * 28 15 4 50 50 H 1.09003 * 109.49450 * 61.39814 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0386 -1.3807 5 6 3.3584 1.1100 -2.0491 6 8 3.7632 1.0774 -3.1920 7 6 3.1062 2.4348 -1.3766 8 7 3.4226 3.5223 -2.3057 9 7 2.5324 4.1226 -3.2055 10 6 3.1792 5.0509 -3.8626 11 6 2.6012 5.9433 -4.9305 12 6 4.5016 5.0677 -3.4069 13 6 4.6229 4.1226 -2.4461 14 6 5.8759 3.7948 -1.6756 15 6 3.3791 -1.3265 -2.0347 16 6 2.0778 -2.1307 -2.0801 17 6 2.3296 -3.4617 -2.7956 18 7 3.4427 -4.1526 -2.1306 19 6 3.2986 -5.4393 -1.6846 20 1 2.3246 -5.8038 -1.3930 21 6 4.4042 -6.2750 -1.6072 22 7 5.5073 -5.9688 -2.2564 23 14 4.3265 -7.8341 -0.5812 24 1 3.2475 -8.7137 -1.0985 25 1 5.6274 -8.5456 -0.6626 26 1 4.0428 -7.4823 0.8333 27 6 4.7133 -3.4367 -1.9528 28 6 4.4349 -2.1058 -1.2472 29 1 -1.0500 0.0002 0.0000 30 1 3.0097 -0.8741 0.5391 31 1 3.0089 0.9051 0.4882 32 1 3.7360 2.5183 -0.4909 33 1 2.0581 2.5003 -1.0845 34 1 2.2016 6.8476 -4.4713 35 1 3.3824 6.2118 -5.6417 36 1 1.8016 5.4162 -5.4509 37 1 5.2863 5.7213 -3.7580 38 1 6.4386 3.0270 -2.2066 39 1 6.4876 4.6916 -1.5782 40 1 5.6076 3.4286 -0.6846 41 1 3.7358 -1.1560 -3.0505 42 1 1.7333 -2.3231 -1.0640 43 1 1.3191 -1.5649 -2.6210 44 1 2.5867 -3.2735 -3.8379 45 1 1.4336 -4.0806 -2.7462 46 1 6.2800 -6.5526 -2.2020 47 1 5.1649 -3.2465 -2.9265 48 1 5.3916 -4.0369 -1.3464 49 1 5.3540 -1.5223 -1.1950 50 1 4.0682 -2.2979 -0.2388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278163580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:13 Heat of formation + Delta-G solvation = 125.498492 kcal Electronic energy + Delta-G solvation = -30680.468059 eV Core-core repulsion = 26712.093443 eV Total energy + Delta-G solvation = -3968.374616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.46993 -40.08658 -37.56222 -35.76816 -34.25856 -33.16364 -32.35503 -32.06174 -30.48435 -29.94300 -29.41536 -27.30801 -27.15414 -26.36365 -24.78265 -22.27164 -22.18430 -20.59246 -20.13044 -19.46097 -19.13976 -18.11795 -17.49221 -16.98319 -16.56787 -15.92484 -15.69052 -15.05846 -14.76662 -14.40137 -13.98725 -13.94532 -13.80454 -13.75842 -13.53625 -13.44318 -13.29760 -13.08970 -13.01654 -12.83584 -12.62272 -12.45171 -12.36938 -12.21776 -11.96113 -11.58221 -11.23203 -11.02771 -10.75567 -10.62113 -10.56683 -10.48640 -10.27034 -10.21114 -10.15772 -9.99872 -9.78257 -9.62960 -9.07836 -8.71851 -8.52861 -8.45583 -6.72128 -5.82411 -3.25199 1.70109 2.18368 2.38220 2.56615 2.70978 2.72816 3.27547 3.36016 3.41782 3.42564 4.19030 4.22996 4.37750 4.45799 4.46422 4.67713 4.77111 4.91942 4.95561 5.19632 5.20877 5.28984 5.30460 5.38904 5.45541 5.46388 5.53186 5.54829 5.60499 5.71988 5.76920 5.80326 5.80957 6.02037 6.11329 6.11817 6.25678 6.44232 6.48431 6.54960 6.61531 6.73182 6.75371 6.89957 6.92652 7.26146 7.32850 7.49239 7.59915 7.68751 7.76016 8.05486 8.41231 9.17370 9.80315 10.37384 11.26420 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.002579 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.399987 B =10852.401538 C =11375.220637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.210 4.210 3 C 0.212 3.788 4 N -0.598 5.598 5 C 0.498 3.502 6 O -0.516 6.516 7 C 0.114 3.886 8 N -0.355 5.355 9 N -0.288 5.288 10 C 0.072 3.928 11 C -0.070 4.070 12 C -0.273 4.273 13 C 0.096 3.904 14 C -0.094 4.094 15 C 0.146 3.854 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.175 3.825 28 C -0.146 4.146 29 H 0.217 0.783 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.019 0.981 45 H 0.057 0.943 46 H 0.255 0.745 47 H 0.020 0.980 48 H 0.092 0.908 49 H 0.053 0.947 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 22.422 5.251 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.211 4.211 3 C 0.090 3.910 4 N -0.331 5.331 5 C 0.284 3.716 6 O -0.390 6.390 7 C -0.012 4.012 8 N -0.137 5.137 9 N -0.109 5.109 10 C -0.094 4.094 11 C -0.129 4.129 12 C -0.302 4.302 13 C -0.031 4.031 14 C -0.153 4.153 15 C 0.045 3.955 16 C -0.175 4.175 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.234 0.766 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.163 0.837 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.110 0.890 49 H 0.071 0.929 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.021 21.582 4.851 22.483 hybrid contribution 0.456 -0.600 0.536 0.925 sum -3.565 20.983 5.387 21.954 Atomic orbital electron populations 1.24945 0.95920 1.00494 0.98329 1.23463 0.94844 1.00961 1.01851 1.18447 0.83990 1.04517 0.84074 1.48298 1.64680 1.06678 1.13431 1.20739 0.78355 0.85484 0.87054 1.90771 1.44470 1.86704 1.17053 1.21521 1.05270 0.83567 0.90795 1.47829 1.07279 1.27622 1.30947 1.77327 1.16064 1.11684 1.05861 1.22292 0.93236 0.96021 0.97878 1.20148 1.01096 0.96944 0.94672 1.21036 0.97876 1.06827 1.04458 1.21057 0.88351 0.94950 0.98702 1.20484 0.92583 1.03471 0.98716 1.21291 0.96525 0.79844 0.97865 1.22359 0.95642 0.97850 1.01631 1.20870 0.92367 0.90908 0.93784 1.44072 1.09320 1.11587 1.66417 1.19132 0.94813 0.87622 1.36775 0.91710 1.25056 0.97449 0.97670 0.99387 1.70017 1.03937 1.38724 1.41984 0.86366 0.76830 0.83068 0.80479 1.20860 1.21616 1.21043 1.20745 0.88802 0.88147 0.97503 1.22593 0.96739 0.99277 0.99955 0.76648 0.86866 0.88682 0.86301 0.86008 0.90727 0.90509 0.91008 0.83676 0.89761 0.89532 0.91379 0.88525 0.91900 0.93128 0.96290 0.92457 0.93503 0.96142 0.89023 0.92872 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.21 -2.43 11.92 -37.12 -0.44 -2.87 16 3 C 0.21 2.25 5.15 -6.83 -0.04 2.22 16 4 N -0.60 -8.37 2.37 -169.37 -0.40 -8.77 16 5 C 0.50 7.43 7.74 -10.99 -0.09 7.34 16 6 O -0.52 -10.10 15.76 5.55 0.09 -10.01 16 7 C 0.11 1.29 5.28 -5.19 -0.03 1.26 16 8 N -0.36 -4.85 3.10 -58.32 -0.18 -5.03 16 9 N -0.29 -4.42 12.58 33.67 0.42 -3.99 16 10 C 0.07 0.94 7.22 -82.40 -0.59 0.35 16 11 C -0.07 -0.63 10.45 36.00 0.38 -0.26 16 12 C -0.27 -3.26 10.65 -40.01 -0.43 -3.69 16 13 C 0.10 1.16 6.93 -82.27 -0.57 0.59 16 14 C -0.09 -0.79 10.12 36.00 0.36 -0.42 16 15 C 0.15 2.54 2.48 -67.88 -0.17 2.37 16 16 C -0.13 -2.41 4.73 -26.60 -0.13 -2.54 16 17 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 18 N -0.59 -14.60 2.99 -172.32 -0.52 -15.11 16 19 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 20 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 21 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 22 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 23 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 28 C -0.15 -2.64 5.31 -26.61 -0.14 -2.78 16 29 H 0.22 1.64 7.80 -54.09 -0.42 1.22 16 30 H 0.11 1.21 6.46 -51.93 -0.34 0.88 16 31 H 0.10 0.65 6.44 -51.93 -0.33 0.32 16 32 H 0.12 0.87 6.31 -51.93 -0.33 0.54 16 33 H 0.12 1.26 7.95 -51.93 -0.41 0.85 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.45 7.08 -51.93 -0.37 0.09 16 41 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 42 H 0.06 1.12 7.02 -51.93 -0.36 0.75 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 49 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.06 1.02 6.72 -51.93 -0.35 0.68 16 LS Contribution 406.66 15.07 6.13 6.13 Total: -1.00 -35.36 406.66 -8.22 -43.59 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.78 Total: 1.75 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.58 Total: 0.41 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.05 Total: -58.19 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.36 -8.22 -43.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278163580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.087 kcal (2) G-P(sol) polarization free energy of solvation -35.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds