Wall clock time and date at job start Wed Apr 1 2020 03:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47044 * 88.36203 * 3 2 1 5 5 C 1.34771 * 120.00177 * 90.00034 * 4 3 2 6 6 O 1.21288 * 119.99981 * 179.97438 * 5 4 3 7 7 C 1.50704 * 120.00228 * 359.97438 * 5 4 3 8 8 N 1.46496 * 109.47400 * 180.02562 * 7 5 4 9 9 N 1.40084 * 126.03539 * 90.02367 * 8 7 5 10 10 C 1.30836 * 108.20699 * 180.02562 * 9 8 7 11 11 C 1.50698 * 125.90175 * 179.97438 * 10 9 8 12 12 C 1.39876 * 108.19797 * 0.24191 * 10 9 8 13 13 C 1.34946 * 126.03818 * 270.02904 * 8 7 5 14 14 C 1.50698 * 126.12901 * 359.97438 * 13 8 7 15 15 C 1.46500 * 119.99815 * 269.99734 * 4 3 2 16 16 C 1.53049 * 109.45842 * 60.02971 * 15 4 3 17 17 C 1.53197 * 109.30827 * 178.60143 * 16 15 4 18 18 N 1.46917 * 108.76801 * 54.65474 * 17 16 15 19 19 C 1.36945 * 120.63323 * 126.35936 * 18 17 16 20 20 H 1.08004 * 119.99401 * 331.85597 * 19 18 17 21 21 C 1.38805 * 120.00238 * 151.85507 * 19 18 17 22 22 N 1.31617 * 119.99980 * 343.08034 * 21 19 18 23 23 Si 1.86801 * 120.00028 * 163.07051 * 21 19 18 24 24 H 1.48510 * 109.46785 * 60.00564 * 23 21 19 25 25 H 1.48498 * 109.47229 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47272 * 300.00622 * 23 21 19 27 27 C 1.46923 * 118.74211 * 306.38266 * 18 17 16 28 28 C 1.53040 * 109.46330 * 299.97328 * 15 4 3 29 29 H 4.40639 * 5.51458 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.46858 * 328.36132 * 3 2 1 31 31 H 1.09000 * 109.46909 * 208.36102 * 3 2 1 32 32 H 1.08997 * 109.46630 * 59.99843 * 7 5 4 33 33 H 1.08996 * 109.47163 * 300.00421 * 7 5 4 34 34 H 1.09006 * 109.47300 * 90.02517 * 11 10 9 35 35 H 1.09004 * 109.47293 * 210.01700 * 11 10 9 36 36 H 1.08997 * 109.47133 * 330.02199 * 11 10 9 37 37 H 1.08000 * 126.03684 * 179.72257 * 12 10 9 38 38 H 1.09003 * 109.47048 * 90.00063 * 14 13 8 39 39 H 1.08992 * 109.47434 * 210.00241 * 14 13 8 40 40 H 1.09000 * 109.46907 * 330.00504 * 14 13 8 41 41 H 1.09000 * 109.46432 * 179.97438 * 15 4 3 42 42 H 1.08999 * 109.49695 * 298.56443 * 16 15 4 43 43 H 1.09001 * 109.49774 * 58.66374 * 16 15 4 44 44 H 1.08995 * 109.59662 * 294.86300 * 17 16 15 45 45 H 1.09006 * 109.69505 * 174.50628 * 17 16 15 46 46 H 0.97000 * 119.99802 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58649 * 293.82317 * 27 18 17 48 48 H 1.08998 * 109.70891 * 173.46414 * 27 18 17 49 49 H 1.08998 * 109.49626 * 301.33943 * 28 15 4 50 50 H 1.09003 * 109.49450 * 61.39814 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0386 -1.3807 5 6 3.3584 1.1100 -2.0491 6 8 3.7632 1.0774 -3.1920 7 6 3.1062 2.4348 -1.3766 8 7 3.4226 3.5223 -2.3057 9 7 2.5324 4.1226 -3.2055 10 6 3.1792 5.0509 -3.8626 11 6 2.6012 5.9433 -4.9305 12 6 4.5016 5.0677 -3.4069 13 6 4.6229 4.1226 -2.4461 14 6 5.8759 3.7948 -1.6756 15 6 3.3791 -1.3265 -2.0347 16 6 2.0778 -2.1307 -2.0801 17 6 2.3296 -3.4617 -2.7956 18 7 3.4427 -4.1526 -2.1306 19 6 3.2986 -5.4393 -1.6846 20 1 2.3246 -5.8038 -1.3930 21 6 4.4042 -6.2750 -1.6072 22 7 5.5073 -5.9688 -2.2564 23 14 4.3265 -7.8341 -0.5812 24 1 3.2475 -8.7137 -1.0985 25 1 5.6274 -8.5456 -0.6626 26 1 4.0428 -7.4823 0.8333 27 6 4.7133 -3.4367 -1.9528 28 6 4.4349 -2.1058 -1.2472 29 1 -1.0500 0.0002 0.0000 30 1 3.0097 -0.8741 0.5391 31 1 3.0089 0.9051 0.4882 32 1 3.7360 2.5183 -0.4909 33 1 2.0581 2.5003 -1.0845 34 1 2.2016 6.8476 -4.4713 35 1 3.3824 6.2118 -5.6417 36 1 1.8016 5.4162 -5.4509 37 1 5.2863 5.7213 -3.7580 38 1 6.4386 3.0270 -2.2066 39 1 6.4876 4.6916 -1.5782 40 1 5.6076 3.4286 -0.6846 41 1 3.7358 -1.1560 -3.0505 42 1 1.7333 -2.3231 -1.0640 43 1 1.3191 -1.5649 -2.6210 44 1 2.5867 -3.2735 -3.8379 45 1 1.4336 -4.0806 -2.7462 46 1 6.2800 -6.5526 -2.2020 47 1 5.1649 -3.2465 -2.9265 48 1 5.3916 -4.0369 -1.3464 49 1 5.3540 -1.5223 -1.1950 50 1 4.0682 -2.2979 -0.2388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278163580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:11 Heat of formation + Delta-G solvation = 104.216358 kcal Electronic energy + Delta-G solvation = -30681.390922 eV Core-core repulsion = 26712.093443 eV Total energy + Delta-G solvation = -3969.297479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.38988 -41.27650 -39.10734 -37.12150 -35.24349 -34.58492 -33.55003 -33.00336 -31.99092 -31.53654 -30.55312 -28.27304 -27.95717 -27.55749 -26.38476 -23.96172 -23.78833 -21.59485 -21.22420 -20.86550 -20.16665 -19.20122 -18.60666 -18.52007 -17.79010 -17.12489 -16.74504 -16.67851 -16.02916 -15.56974 -15.43688 -15.21369 -14.94617 -14.81534 -14.75157 -14.64017 -14.35740 -14.25520 -14.09251 -14.05306 -13.81919 -13.33755 -13.27264 -13.21925 -13.06975 -13.04006 -12.72273 -12.68699 -12.58085 -12.21796 -12.08688 -11.98248 -11.59369 -11.47496 -11.44189 -11.40815 -11.27518 -10.96296 -10.58454 -10.02987 -9.93613 -9.43483 -8.74308 -7.89659 -5.36317 0.76457 1.25503 1.35776 1.47992 1.49525 1.56921 1.62534 1.84596 1.90149 2.28429 2.50379 3.25961 3.28298 3.46438 3.52767 3.60898 3.71432 3.82015 3.90603 3.99447 4.02115 4.16751 4.22810 4.25958 4.40098 4.45151 4.52171 4.57255 4.69603 4.74337 4.76791 4.78911 4.81678 4.92581 4.95351 4.97661 5.01605 5.05999 5.06975 5.10220 5.23066 5.31916 5.38698 5.43963 5.61184 5.67155 5.76834 6.02325 6.22500 6.36171 6.68721 6.77202 6.92302 7.11604 7.80499 8.34043 9.17405 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.002579 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.399987 B =10852.401538 C =11375.220637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.237 4.237 3 C 0.207 3.793 4 N -0.592 5.592 5 C 0.498 3.502 6 O -0.571 6.571 7 C 0.119 3.881 8 N -0.368 5.368 9 N -0.337 5.337 10 C 0.060 3.940 11 C -0.068 4.068 12 C -0.289 4.289 13 C 0.088 3.912 14 C -0.093 4.093 15 C 0.157 3.843 16 C -0.114 4.114 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.264 4.264 20 H 0.069 0.931 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.181 3.819 28 C -0.126 4.126 29 H 0.239 0.761 30 H 0.116 0.884 31 H 0.141 0.859 32 H 0.166 0.834 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.167 0.833 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.002 0.998 45 H 0.060 0.940 46 H 0.251 0.749 47 H -0.013 1.013 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 24.109 7.825 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.238 4.238 3 C 0.086 3.914 4 N -0.323 5.323 5 C 0.286 3.714 6 O -0.450 6.450 7 C -0.006 4.006 8 N -0.150 5.150 9 N -0.159 5.159 10 C -0.106 4.106 11 C -0.127 4.127 12 C -0.317 4.317 13 C -0.038 4.038 14 C -0.151 4.151 15 C 0.054 3.946 16 C -0.154 4.154 17 C 0.018 3.982 18 N -0.330 5.330 19 C -0.394 4.394 20 H 0.086 0.914 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.798 3.202 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.199 1.199 27 C 0.054 3.946 28 C -0.166 4.166 29 H 0.256 0.744 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.183 0.817 33 H 0.151 0.849 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.185 0.815 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.020 0.980 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.005 0.995 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.657 23.298 7.463 24.904 hybrid contribution 0.595 -1.101 -0.345 1.299 sum -4.061 22.197 7.117 23.661 Atomic orbital electron populations 1.25680 0.96856 0.99758 0.97095 1.23743 0.95446 1.01775 1.02883 1.18828 0.83814 1.06947 0.81819 1.48160 1.64327 1.05057 1.14763 1.21435 0.76904 0.86714 0.86394 1.90753 1.47043 1.87517 1.19650 1.21727 1.07020 0.80686 0.91185 1.48034 1.07659 1.28053 1.31235 1.77241 1.17883 1.13283 1.07518 1.22958 0.93926 0.95737 0.97995 1.20271 1.01383 0.96874 0.94163 1.21452 0.98097 1.07538 1.04660 1.21740 0.88951 0.94393 0.98764 1.20618 0.91042 1.04368 0.99042 1.20819 0.95750 0.81578 0.96474 1.22095 0.96030 0.95804 1.01502 1.20966 0.91440 0.92586 0.93190 1.44317 1.10224 1.11530 1.66934 1.19475 0.95018 0.88628 1.36320 0.91379 1.25839 0.97172 1.00849 1.00578 1.70189 1.04522 1.39931 1.43563 0.85312 0.76436 0.79299 0.79201 1.20325 1.22134 1.19909 1.20536 0.87939 0.90238 0.95839 1.22302 0.97892 0.96517 0.99874 0.74423 0.86636 0.84181 0.81699 0.84875 0.88885 0.88736 0.91765 0.81517 0.90823 0.87160 0.89211 0.91944 0.90965 0.92541 0.97964 0.92150 0.93989 0.99470 0.91730 0.91322 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 19.25 74.32 1.43 -1.84 16 2 C -0.24 -4.78 11.92 31.13 0.37 -4.41 16 3 C 0.21 3.69 5.15 84.57 0.44 4.13 16 4 N -0.59 -15.54 2.37 -808.14 -1.91 -17.46 16 5 C 0.50 14.25 7.74 87.66 0.68 14.93 16 6 O -0.57 -22.77 15.76 -3.05 -0.05 -22.82 16 7 C 0.12 2.37 5.28 85.64 0.45 2.82 16 8 N -0.37 -9.55 3.10 -338.42 -1.05 -10.60 16 9 N -0.34 -10.26 12.58 -47.38 -0.60 -10.85 16 10 C 0.06 1.53 7.22 43.10 0.31 1.84 16 11 C -0.07 -1.18 10.45 71.24 0.74 -0.43 16 12 C -0.29 -6.55 10.65 21.99 0.23 -6.32 16 13 C 0.09 1.99 6.93 41.40 0.29 2.27 16 14 C -0.09 -1.30 10.12 71.24 0.72 -0.58 16 15 C 0.16 5.43 2.48 45.02 0.11 5.54 16 16 C -0.11 -4.04 4.73 30.68 0.15 -3.89 16 17 C 0.14 6.27 6.52 86.37 0.56 6.83 16 18 N -0.61 -30.60 2.99 -699.11 -2.09 -32.69 16 19 C -0.26 -14.41 9.58 84.03 0.81 -13.61 16 20 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 21 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 22 N -0.94 -55.32 11.19 21.65 0.24 -55.08 16 23 Si 0.97 44.14 29.59 68.60 2.03 46.17 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 25 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 C 0.18 8.72 5.30 86.36 0.46 9.18 16 28 C -0.13 -4.52 5.31 30.67 0.16 -4.36 16 29 H 0.24 2.90 7.80 -4.42 -0.03 2.87 16 30 H 0.12 2.06 6.46 -2.39 -0.02 2.05 16 31 H 0.14 1.22 6.44 -2.39 -0.02 1.20 16 32 H 0.17 1.64 6.31 -2.39 -0.02 1.62 16 33 H 0.13 2.39 7.95 -2.39 -0.02 2.37 16 34 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 0.84 7.08 -2.39 -0.02 0.82 16 41 H 0.06 2.63 6.90 -2.39 -0.02 2.61 16 42 H 0.07 2.44 7.02 -2.39 -0.02 2.42 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.06 2.53 7.93 -2.38 -0.02 2.52 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 48 H 0.06 3.46 6.06 -2.39 -0.01 3.44 16 49 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.07 2.47 6.72 -2.39 -0.02 2.46 16 Total: -1.00 -81.30 406.66 5.83 -75.47 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.93 Total: 18.03 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 8.33 Total: 9.82 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -5.41 Total: -126.67 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -81.30 5.83 -75.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278163580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.688 kcal (2) G-P(sol) polarization free energy of solvation -81.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds