Wall clock time and date at job start Wed Apr 1 2020 03:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35321 * 126.12468 * 2 1 4 4 C 1.50701 * 126.03823 * 0.02779 * 3 2 1 5 5 N 1.46901 * 109.46921 * 79.71213 * 4 3 2 6 6 C 1.47656 * 111.00233 * 266.32022 * 5 4 3 7 7 C 1.52653 * 87.64536 * 222.00474 * 6 5 4 8 8 C 1.52120 * 129.72925 * 246.27881 * 7 6 5 9 9 C 1.52117 * 129.73117 * 164.47111 * 7 6 5 10 10 H 1.08992 * 117.52413 * 226.39198 * 9 7 6 11 11 C 1.50704 * 117.52209 * 11.55740 * 9 7 6 12 12 O 1.21274 * 119.99819 * 359.97438 * 11 9 7 13 13 N 1.34775 * 119.99825 * 180.02562 * 11 9 7 14 14 C 1.47067 * 136.05845 * 359.62181 * 13 11 9 15 15 C 1.53761 * 87.88720 * 152.96583 * 14 13 11 16 16 C 1.50703 * 114.08468 * 139.78073 * 15 14 13 17 17 H 1.08004 * 119.99525 * 266.55440 * 16 15 14 18 18 C 1.37874 * 120.00442 * 86.56227 * 16 15 14 19 19 N 1.31519 * 119.99528 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00301 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47037 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46857 * 119.99849 * 20 18 16 23 23 H 1.48493 * 109.47314 * 239.99938 * 20 18 16 24 24 C 1.47070 * 136.05411 * 179.97438 * 13 11 9 25 25 C 1.47666 * 110.99721 * 169.99817 * 5 4 3 26 26 C 1.39864 * 107.92130 * 179.76324 * 3 2 1 27 27 N 1.30845 * 108.20132 * 0.24408 * 26 3 2 28 28 N 1.34946 * 126.12944 * 180.18433 * 2 1 3 29 29 C 1.46492 * 126.03874 * 359.97438 * 28 2 1 30 30 H 1.09001 * 109.47722 * 90.00034 * 1 2 3 31 31 H 1.09005 * 109.46690 * 209.99892 * 1 2 3 32 32 H 1.09005 * 109.47551 * 329.99378 * 1 2 3 33 33 H 1.09002 * 109.47060 * 199.71394 * 4 3 2 34 34 H 1.09001 * 109.47380 * 319.71481 * 4 3 2 35 35 H 1.09007 * 113.52386 * 336.69270 * 6 5 4 36 36 H 1.08997 * 113.52697 * 107.30808 * 6 5 4 37 37 H 1.09008 * 117.52051 * 348.44750 * 8 7 6 38 38 H 1.08996 * 117.52498 * 133.54500 * 8 7 6 39 39 H 1.09004 * 113.46467 * 267.69431 * 14 13 11 40 40 H 1.08996 * 113.46935 * 38.13866 * 14 13 11 41 41 H 1.08998 * 114.57393 * 272.65989 * 15 14 13 42 42 H 0.96996 * 119.99713 * 179.97438 * 19 18 16 43 43 H 1.08990 * 113.47101 * 321.86565 * 24 13 11 44 44 H 1.09005 * 113.46210 * 92.24645 * 24 13 11 45 45 H 1.09001 * 113.51921 * 252.69228 * 25 5 4 46 46 H 1.08997 * 113.52234 * 23.23846 * 25 5 4 47 47 H 1.07994 * 125.90346 * 180.26176 * 26 3 2 48 48 H 1.09003 * 109.47743 * 270.26456 * 29 28 2 49 49 H 1.09004 * 109.47115 * 30.26891 * 29 28 2 50 50 H 1.09002 * 109.47363 * 150.26161 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5276 0.0006 5 7 1.4582 2.9175 1.3636 6 6 0.0105 2.7245 1.5803 7 6 0.0053 4.0644 2.3117 8 6 -0.2547 4.3702 3.7790 9 6 -1.1643 4.9582 2.6954 10 1 -1.0738 6.0239 2.4857 11 6 -2.5516 4.3843 2.5642 12 8 -2.7030 3.2494 2.1645 13 7 -3.6240 5.1328 2.8900 14 6 -3.8503 6.4945 3.3974 15 6 -5.2249 6.4612 2.7092 16 6 -6.3330 7.0850 3.5180 17 1 -6.9441 6.4695 4.1615 18 6 -6.5666 8.4414 3.4365 19 7 -5.8221 9.1909 2.6532 20 14 -7.9404 9.2144 4.4386 21 1 -8.6247 8.1635 5.2339 22 1 -7.3709 10.2354 5.3544 23 1 -8.9173 9.8591 3.5247 24 6 -5.0826 4.9450 2.9005 25 6 1.2286 4.3735 1.4525 26 6 3.6334 0.6561 0.0055 27 7 3.6334 -0.6523 0.0034 28 7 2.3026 -1.0899 -0.0035 29 6 1.8541 -2.4845 -0.0075 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 2.6527 3.1699 -0.3462 34 1 0.9853 2.6336 -0.6635 35 1 -0.5719 2.7296 0.6589 36 1 -0.2239 1.8766 2.2240 37 1 -0.6600 3.5685 4.3965 38 1 0.4344 5.0486 4.2819 39 1 -3.9104 6.5482 4.4844 40 1 -3.1697 7.2337 2.9752 41 1 -5.2183 6.7827 1.6677 42 1 -5.9867 10.1450 2.5955 43 1 -5.4517 4.3644 2.0551 44 1 -5.4676 4.5891 3.8562 45 1 2.0139 4.9058 1.9892 46 1 0.9841 4.8346 0.4955 47 1 4.5083 1.2893 0.0109 48 1 1.7386 -2.8320 1.0192 49 1 0.8977 -2.5570 -0.5254 50 1 2.5920 -3.1021 -0.5193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278333964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:48 Heat of formation + Delta-G solvation = 153.331349 kcal Electronic energy + Delta-G solvation = -29550.806053 eV Core-core repulsion = 25583.638360 eV Total energy + Delta-G solvation = -3967.167693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.55026 -40.55421 -39.18492 -37.18600 -35.10154 -33.69331 -32.72212 -32.51281 -29.70012 -29.11760 -26.97847 -26.15619 -25.93648 -25.47492 -24.98625 -23.19402 -22.78266 -20.97106 -20.27304 -19.41627 -18.79678 -17.99235 -16.95296 -16.72807 -16.42044 -16.16359 -15.64249 -15.42854 -15.04432 -14.77938 -14.52241 -14.42317 -14.17160 -13.97793 -13.64116 -13.37101 -13.05557 -13.03392 -12.85314 -12.60658 -12.49152 -12.36429 -12.25885 -12.13944 -11.88130 -11.54607 -11.34928 -11.28264 -10.99483 -10.83891 -10.78258 -10.41458 -10.40531 -10.27733 -10.16424 -9.59822 -9.39142 -9.24931 -9.03438 -8.84150 -8.61781 -8.41090 -7.88052 -6.21794 -4.27230 1.69644 2.33298 2.60790 2.93376 3.20407 3.29493 3.32514 3.41291 3.80565 4.22302 4.26354 4.31745 4.36074 4.48884 4.60429 4.76478 4.83665 4.84575 4.90188 5.03122 5.07307 5.10318 5.20350 5.23458 5.27787 5.35291 5.39680 5.52408 5.55091 5.65972 5.68713 5.71843 5.73783 5.89905 5.94778 5.98399 6.01478 6.07605 6.15497 6.24356 6.28578 6.40828 6.51433 6.55686 6.63949 6.79293 6.84987 7.01640 7.52077 7.56407 7.76212 8.14611 8.50065 8.75855 8.77417 9.39812 10.87995 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026367 B = 0.001902 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.661704 B =14719.251384 C =15305.968000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.098 3.902 3 C -0.226 4.226 4 C 0.098 3.902 5 N -0.465 5.465 6 C 0.057 3.943 7 C -0.138 4.138 8 C -0.109 4.109 9 C -0.161 4.161 10 H 0.123 0.877 11 C 0.561 3.439 12 O -0.564 6.564 13 N -0.639 5.639 14 C 0.100 3.900 15 C 0.034 3.966 16 C -0.517 4.517 17 H 0.064 0.936 18 C 0.068 3.932 19 N -0.886 5.886 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.100 3.900 25 C 0.040 3.960 26 C 0.064 3.936 27 N -0.305 5.305 28 N -0.377 5.377 29 C 0.101 3.899 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.264 0.736 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.181 0.819 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.558 -13.997 -4.545 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.030 4.030 3 C -0.237 4.237 4 C -0.031 4.031 5 N -0.187 5.187 6 C -0.071 4.071 7 C -0.139 4.139 8 C -0.147 4.147 9 C -0.183 4.183 10 H 0.141 0.859 11 C 0.351 3.649 12 O -0.445 6.445 13 N -0.372 5.372 14 C -0.023 4.023 15 C 0.015 3.985 16 C -0.555 4.555 17 H 0.082 0.918 18 C -0.136 4.136 19 N -0.523 5.523 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.022 4.022 25 C -0.089 4.089 26 C -0.122 4.122 27 N -0.126 5.126 28 N -0.160 5.160 29 C -0.040 4.040 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.198 0.802 48 H 0.091 0.909 49 H 0.104 0.896 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.882 -16.101 -4.485 23.756 hybrid contribution -1.651 1.665 0.020 2.345 sum 15.231 -14.436 -4.465 21.455 Atomic orbital electron populations 1.20788 0.87361 1.05134 1.03472 1.20882 0.94460 0.87049 1.00649 1.19533 0.92369 0.94650 1.17170 1.20870 1.00150 0.91686 0.90431 1.69060 1.17280 1.08093 1.24303 1.23315 0.88254 0.96117 0.99428 1.21909 0.95952 0.97794 0.98236 1.22656 0.99915 1.02219 0.89897 1.22071 0.89591 0.99873 1.06730 0.85922 1.19037 0.83981 0.84225 0.77674 1.90599 1.86256 1.18515 1.49105 1.49946 1.06671 1.17788 1.62766 1.23653 0.99683 0.79843 0.99103 1.20399 0.91876 0.88348 0.97892 1.20952 1.15738 0.92845 1.25949 0.91790 1.25033 0.96121 0.97382 0.95042 1.69959 1.38930 1.05980 1.37386 0.86479 0.81879 0.79327 0.80012 1.19554 1.20891 1.20872 1.23334 0.77444 1.01076 1.00305 1.23345 0.95388 0.91602 0.98555 1.23685 0.97549 0.91900 0.99114 1.77332 0.96600 1.13013 1.25639 1.48351 1.03969 1.05860 1.57778 1.21807 1.00912 0.77995 1.03305 0.90298 0.91093 0.88281 0.90140 0.93149 0.90361 0.89627 0.88143 0.87552 0.90770 0.92235 0.91357 0.92676 0.92539 0.90938 0.89355 0.90790 0.80241 0.90852 0.89620 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.68 36.01 0.35 -0.67 16 2 C 0.10 1.09 6.93 -82.26 -0.57 0.52 16 3 C -0.23 -2.58 5.68 -105.05 -0.60 -3.18 16 4 C 0.10 1.01 4.95 -4.97 -0.02 0.99 16 5 N -0.47 -5.43 6.31 -245.39 -1.55 -6.98 16 6 C 0.06 0.74 4.13 -6.77 -0.03 0.71 16 7 C -0.14 -1.78 3.13 -155.77 -0.49 -2.26 16 8 C -0.11 -1.38 10.24 -27.07 -0.28 -1.65 16 9 C -0.16 -2.37 6.02 -92.11 -0.55 -2.93 16 10 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 11 C 0.56 10.50 7.86 -10.98 -0.09 10.42 16 12 O -0.56 -11.65 16.07 5.56 0.09 -11.56 16 13 N -0.64 -12.63 3.69 -185.04 -0.68 -13.32 16 14 C 0.10 2.03 7.99 -8.36 -0.07 1.97 16 15 C 0.03 0.78 3.80 -91.12 -0.35 0.43 16 16 C -0.52 -12.87 8.82 -34.44 -0.30 -13.18 16 17 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 18 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -23.65 13.26 55.43 0.74 -22.92 16 20 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.10 2.05 8.17 -8.50 -0.07 1.98 16 25 C 0.04 0.43 7.71 -6.76 -0.05 0.37 16 26 C 0.06 0.73 11.96 -17.36 -0.21 0.52 16 27 N -0.31 -3.87 12.58 30.62 0.39 -3.49 16 28 N -0.38 -4.17 4.01 -63.89 -0.26 -4.42 16 29 C 0.10 0.69 11.09 59.84 0.66 1.36 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.56 7.74 -51.93 -0.40 0.16 16 32 H 0.10 1.05 3.83 -51.93 -0.20 0.86 16 33 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.05 0.52 7.30 -51.93 -0.38 0.14 16 35 H 0.08 1.06 6.56 -51.93 -0.34 0.72 16 36 H 0.09 1.21 7.69 -51.93 -0.40 0.81 16 37 H 0.10 1.33 8.14 -51.92 -0.42 0.90 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 42 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 47 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.41 7.67 -51.93 -0.40 0.01 16 50 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 408.94 15.07 6.16 6.16 Total: -1.00 -30.66 408.94 -10.88 -41.53 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.98 Total: 3.27 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.76 Total: -2.98 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -1.37 Total: -51.12 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.66 -10.88 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278333964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.864 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds