Wall clock time and date at job start Wed Apr 1 2020 03:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35321 * 126.12468 * 2 1 4 4 C 1.50701 * 126.03823 * 0.02779 * 3 2 1 5 5 N 1.46901 * 109.46921 * 79.71213 * 4 3 2 6 6 C 1.47656 * 111.00233 * 266.32022 * 5 4 3 7 7 C 1.52653 * 87.64536 * 222.00474 * 6 5 4 8 8 C 1.52120 * 129.72925 * 246.27881 * 7 6 5 9 9 C 1.52117 * 129.73117 * 164.47111 * 7 6 5 10 10 H 1.08992 * 117.52413 * 226.39198 * 9 7 6 11 11 C 1.50704 * 117.52209 * 11.55740 * 9 7 6 12 12 O 1.21274 * 119.99819 * 359.97438 * 11 9 7 13 13 N 1.34775 * 119.99825 * 180.02562 * 11 9 7 14 14 C 1.47067 * 136.05845 * 359.62181 * 13 11 9 15 15 C 1.53761 * 87.88720 * 152.96583 * 14 13 11 16 16 C 1.50703 * 114.08468 * 139.78073 * 15 14 13 17 17 H 1.08004 * 119.99525 * 266.55440 * 16 15 14 18 18 C 1.37874 * 120.00442 * 86.56227 * 16 15 14 19 19 N 1.31519 * 119.99528 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00301 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47037 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46857 * 119.99849 * 20 18 16 23 23 H 1.48493 * 109.47314 * 239.99938 * 20 18 16 24 24 C 1.47070 * 136.05411 * 179.97438 * 13 11 9 25 25 C 1.47666 * 110.99721 * 169.99817 * 5 4 3 26 26 C 1.39864 * 107.92130 * 179.76324 * 3 2 1 27 27 N 1.30845 * 108.20132 * 0.24408 * 26 3 2 28 28 N 1.34946 * 126.12944 * 180.18433 * 2 1 3 29 29 C 1.46492 * 126.03874 * 359.97438 * 28 2 1 30 30 H 1.09001 * 109.47722 * 90.00034 * 1 2 3 31 31 H 1.09005 * 109.46690 * 209.99892 * 1 2 3 32 32 H 1.09005 * 109.47551 * 329.99378 * 1 2 3 33 33 H 1.09002 * 109.47060 * 199.71394 * 4 3 2 34 34 H 1.09001 * 109.47380 * 319.71481 * 4 3 2 35 35 H 1.09007 * 113.52386 * 336.69270 * 6 5 4 36 36 H 1.08997 * 113.52697 * 107.30808 * 6 5 4 37 37 H 1.09008 * 117.52051 * 348.44750 * 8 7 6 38 38 H 1.08996 * 117.52498 * 133.54500 * 8 7 6 39 39 H 1.09004 * 113.46467 * 267.69431 * 14 13 11 40 40 H 1.08996 * 113.46935 * 38.13866 * 14 13 11 41 41 H 1.08998 * 114.57393 * 272.65989 * 15 14 13 42 42 H 0.96996 * 119.99713 * 179.97438 * 19 18 16 43 43 H 1.08990 * 113.47101 * 321.86565 * 24 13 11 44 44 H 1.09005 * 113.46210 * 92.24645 * 24 13 11 45 45 H 1.09001 * 113.51921 * 252.69228 * 25 5 4 46 46 H 1.08997 * 113.52234 * 23.23846 * 25 5 4 47 47 H 1.07994 * 125.90346 * 180.26176 * 26 3 2 48 48 H 1.09003 * 109.47743 * 270.26456 * 29 28 2 49 49 H 1.09004 * 109.47115 * 30.26891 * 29 28 2 50 50 H 1.09002 * 109.47363 * 150.26161 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5276 0.0006 5 7 1.4582 2.9175 1.3636 6 6 0.0105 2.7245 1.5803 7 6 0.0053 4.0644 2.3117 8 6 -0.2547 4.3702 3.7790 9 6 -1.1643 4.9582 2.6954 10 1 -1.0738 6.0239 2.4857 11 6 -2.5516 4.3843 2.5642 12 8 -2.7030 3.2494 2.1645 13 7 -3.6240 5.1328 2.8900 14 6 -3.8503 6.4945 3.3974 15 6 -5.2249 6.4612 2.7092 16 6 -6.3330 7.0850 3.5180 17 1 -6.9441 6.4695 4.1615 18 6 -6.5666 8.4414 3.4365 19 7 -5.8221 9.1909 2.6532 20 14 -7.9404 9.2144 4.4386 21 1 -8.6247 8.1635 5.2339 22 1 -7.3709 10.2354 5.3544 23 1 -8.9173 9.8591 3.5247 24 6 -5.0826 4.9450 2.9005 25 6 1.2286 4.3735 1.4525 26 6 3.6334 0.6561 0.0055 27 7 3.6334 -0.6523 0.0034 28 7 2.3026 -1.0899 -0.0035 29 6 1.8541 -2.4845 -0.0075 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 2.6527 3.1699 -0.3462 34 1 0.9853 2.6336 -0.6635 35 1 -0.5719 2.7296 0.6589 36 1 -0.2239 1.8766 2.2240 37 1 -0.6600 3.5685 4.3965 38 1 0.4344 5.0486 4.2819 39 1 -3.9104 6.5482 4.4844 40 1 -3.1697 7.2337 2.9752 41 1 -5.2183 6.7827 1.6677 42 1 -5.9867 10.1450 2.5955 43 1 -5.4517 4.3644 2.0551 44 1 -5.4676 4.5891 3.8562 45 1 2.0139 4.9058 1.9892 46 1 0.9841 4.8346 0.4955 47 1 4.5083 1.2893 0.0109 48 1 1.7386 -2.8320 1.0192 49 1 0.8977 -2.5570 -0.5254 50 1 2.5920 -3.1021 -0.5193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278333964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:47 Heat of formation + Delta-G solvation = 134.090031 kcal Electronic energy + Delta-G solvation = -29551.640419 eV Core-core repulsion = 25583.638360 eV Total energy + Delta-G solvation = -3968.002059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.37619 -41.64785 -40.63384 -38.69361 -36.19859 -34.62825 -34.44081 -33.34945 -31.08842 -30.20303 -27.72765 -27.43983 -26.90150 -26.70867 -26.65015 -24.51906 -23.70261 -21.91595 -21.70662 -20.25195 -19.99567 -19.29360 -18.71725 -18.02554 -17.46367 -17.14896 -16.66320 -16.61370 -16.28614 -16.10736 -16.08375 -15.38151 -15.12457 -15.00641 -14.81446 -14.36668 -14.15194 -14.00741 -13.87385 -13.77517 -13.47977 -13.31124 -13.24087 -13.20132 -13.12650 -13.01758 -12.93083 -12.74014 -12.57674 -12.17508 -12.11330 -11.69722 -11.43929 -11.34366 -11.25750 -11.15635 -11.02600 -10.65656 -10.48256 -10.18870 -9.81365 -9.50014 -9.23838 -8.15594 -6.26216 0.88254 1.46898 1.50531 1.53513 1.61050 1.64259 1.77829 1.98164 2.46983 2.71498 3.14122 3.19392 3.30813 3.56848 3.63928 3.75080 3.76802 3.90319 4.00114 4.14950 4.26862 4.33415 4.35444 4.41107 4.41663 4.43026 4.51183 4.54453 4.58263 4.58585 4.62154 4.72386 4.72863 4.77283 4.79447 4.84427 4.89040 4.94311 4.96203 5.00984 5.03552 5.05872 5.12005 5.16222 5.44589 5.61342 5.72383 5.83210 6.10244 6.14360 6.24944 6.74514 6.82543 6.94879 7.22830 7.43879 8.94518 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026367 B = 0.001902 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.661704 B =14719.251384 C =15305.968000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.089 3.911 3 C -0.242 4.242 4 C 0.101 3.899 5 N -0.469 5.469 6 C 0.060 3.940 7 C -0.139 4.139 8 C -0.096 4.096 9 C -0.175 4.175 10 H 0.132 0.868 11 C 0.556 3.444 12 O -0.587 6.587 13 N -0.643 5.643 14 C 0.117 3.883 15 C 0.022 3.978 16 C -0.526 4.526 17 H 0.066 0.934 18 C 0.021 3.979 19 N -0.918 5.918 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.284 1.284 24 C 0.106 3.894 25 C 0.049 3.951 26 C 0.057 3.943 27 N -0.336 5.336 28 N -0.382 5.382 29 C 0.091 3.909 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.264 0.736 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.201 0.799 48 H 0.081 0.919 49 H 0.106 0.894 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.439 -14.007 -3.885 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.040 4.040 3 C -0.254 4.254 4 C -0.027 4.027 5 N -0.191 5.191 6 C -0.068 4.068 7 C -0.141 4.141 8 C -0.133 4.133 9 C -0.196 4.196 10 H 0.150 0.850 11 C 0.348 3.652 12 O -0.469 6.469 13 N -0.375 5.375 14 C -0.006 4.006 15 C 0.002 3.998 16 C -0.564 4.564 17 H 0.084 0.916 18 C -0.179 4.179 19 N -0.556 5.556 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.210 1.210 24 C -0.017 4.017 25 C -0.079 4.079 26 C -0.128 4.128 27 N -0.158 5.158 28 N -0.165 5.165 29 C -0.049 4.049 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.125 0.875 46 H 0.102 0.898 47 H 0.218 0.782 48 H 0.099 0.901 49 H 0.125 0.875 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.773 -16.136 -3.822 24.307 hybrid contribution -1.934 1.552 -0.235 2.491 sum 15.838 -14.584 -4.057 21.909 Atomic orbital electron populations 1.20774 0.86377 1.04994 1.04206 1.21206 0.95207 0.87325 1.00243 1.19769 0.92584 0.95260 1.17790 1.20877 1.00610 0.91572 0.89683 1.69048 1.15966 1.08825 1.25309 1.23189 0.89234 0.95596 0.98770 1.22119 0.95739 0.97395 0.98819 1.22782 0.98934 1.01923 0.89632 1.22001 0.87587 1.00470 1.09575 0.84981 1.19754 0.85058 0.83895 0.76511 1.90584 1.86791 1.19614 1.49908 1.49953 1.06671 1.17632 1.63278 1.23353 0.97977 0.80231 0.99037 1.20280 0.93132 0.90057 0.96307 1.21241 1.16202 0.93150 1.25856 0.91626 1.25749 0.98210 0.97932 0.96049 1.70060 1.40501 1.06191 1.38852 0.85508 0.79153 0.78452 0.78551 1.18865 1.20572 1.21033 1.23193 0.78437 0.99323 1.00701 1.23392 0.94651 0.91219 0.98681 1.24087 0.98385 0.91843 0.98488 1.77266 0.97846 1.13810 1.26854 1.48678 1.03478 1.07105 1.57243 1.22117 1.02122 0.76337 1.04291 0.89074 0.89849 0.89743 0.88426 0.93243 0.91321 0.91330 0.88991 0.84659 0.90206 0.92098 0.94297 0.92662 0.92665 0.90019 0.87457 0.89827 0.78204 0.90075 0.87535 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.68 71.24 0.69 -1.19 16 2 C 0.09 1.91 6.93 41.41 0.29 2.20 16 3 C -0.24 -5.31 5.68 -20.14 -0.11 -5.43 16 4 C 0.10 1.96 4.95 85.56 0.42 2.38 16 5 N -0.47 -10.19 6.31 -930.26 -5.87 -16.06 16 6 C 0.06 1.53 4.13 83.98 0.35 1.88 16 7 C -0.14 -3.37 3.13 -52.99 -0.17 -3.53 16 8 C -0.10 -2.20 10.24 30.37 0.31 -1.89 16 9 C -0.17 -4.92 6.02 -11.76 -0.07 -4.99 16 10 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 11 C 0.56 20.60 7.86 87.66 0.69 21.29 16 12 O -0.59 -24.29 16.07 -3.01 -0.05 -24.34 16 13 N -0.64 -25.26 3.69 -857.72 -3.16 -28.42 16 14 C 0.12 4.72 7.99 83.27 0.67 5.39 16 15 C 0.02 1.00 3.80 -11.12 -0.04 0.95 16 16 C -0.53 -26.24 8.82 25.60 0.23 -26.01 16 17 H 0.07 3.18 7.81 -2.91 -0.02 3.16 16 18 C 0.02 1.06 5.46 84.65 0.46 1.52 16 19 N -0.92 -49.36 13.26 21.45 0.28 -49.07 16 20 Si 0.96 40.19 29.54 68.60 2.03 42.21 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.11 4.33 8.17 83.18 0.68 5.01 16 25 C 0.05 0.93 7.71 83.98 0.65 1.57 16 26 C 0.06 1.25 11.96 85.23 1.02 2.27 16 27 N -0.34 -8.34 12.58 -57.03 -0.72 -9.06 16 28 N -0.38 -8.15 4.01 -356.04 -1.43 -9.58 16 29 C 0.09 1.14 11.09 127.77 1.42 2.56 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.23 7.74 -2.38 -0.02 1.22 16 32 H 0.08 1.79 3.83 -2.38 -0.01 1.78 16 33 H 0.10 1.52 8.08 -2.39 -0.02 1.51 16 34 H 0.05 0.96 7.30 -2.39 -0.02 0.95 16 35 H 0.07 1.86 6.56 -2.38 -0.02 1.85 16 36 H 0.07 1.95 7.69 -2.39 -0.02 1.94 16 37 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.08 3.14 8.10 -2.39 -0.02 3.12 16 40 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.04 2.02 8.11 -2.39 -0.02 2.00 16 42 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 43 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.08 3.18 8.10 -2.38 -0.02 3.16 16 45 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 1.45 7.91 -2.39 -0.02 1.43 16 47 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.11 0.85 7.67 -2.39 -0.02 0.83 16 50 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -65.54 408.94 -0.51 -66.05 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.94 Total: 24.28 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 7.47 Total: 3.98 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -10.89 Total: -112.18 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -65.54 -0.51 -66.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278333964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.136 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds