Wall clock time and date at job start Wed Apr 1 2020 03:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35314 * 126.12860 * 2 1 4 4 C 1.50706 * 126.03443 * 0.02562 * 3 2 1 5 5 N 1.46905 * 109.47059 * 79.71540 * 4 3 2 6 6 C 1.48555 * 110.99889 * 74.58229 * 5 4 3 7 7 C 1.54377 * 104.59533 * 159.04089 * 6 5 4 8 8 H 1.09003 * 117.60755 * 117.24468 * 7 6 5 9 9 C 1.53001 * 118.12616 * 272.76917 * 7 6 5 10 10 C 1.53150 * 60.64728 * 91.70321 * 9 7 6 11 11 C 1.50694 * 120.38882 * 111.46176 * 10 9 7 12 12 O 1.21279 * 120.00307 * 291.86158 * 11 10 9 13 13 N 1.34782 * 120.00071 * 111.85980 * 11 10 9 14 14 C 1.47066 * 136.05604 * 359.62882 * 13 11 10 15 15 C 1.53233 * 88.08348 * 207.20074 * 14 13 11 16 16 C 1.50698 * 114.50801 * 220.45343 * 15 14 13 17 17 H 1.07997 * 119.99608 * 93.84725 * 16 15 14 18 18 C 1.37874 * 120.00492 * 273.84716 * 16 15 14 19 19 N 1.31522 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00420 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46979 * 90.00183 * 20 18 16 22 22 H 1.48491 * 109.47187 * 210.00240 * 20 18 16 23 23 H 1.48506 * 109.46700 * 330.00514 * 20 18 16 24 24 C 1.47058 * 136.05822 * 179.97438 * 13 11 10 25 25 C 1.48560 * 110.99577 * 189.99748 * 5 4 3 26 26 C 1.39863 * 107.92370 * 179.76326 * 3 2 1 27 27 N 1.30833 * 108.20304 * 0.23783 * 26 3 2 28 28 N 1.34955 * 126.12888 * 180.17787 * 2 1 3 29 29 C 1.46504 * 126.03539 * 359.97438 * 28 2 1 30 30 H 1.08996 * 109.47224 * 90.00363 * 1 2 3 31 31 H 1.09005 * 109.47105 * 209.99456 * 1 2 3 32 32 H 1.08993 * 109.47392 * 329.99550 * 1 2 3 33 33 H 1.08998 * 109.47305 * 319.71522 * 4 3 2 34 34 H 1.08997 * 109.46731 * 199.71620 * 4 3 2 35 35 H 1.09005 * 110.41154 * 277.81401 * 6 5 4 36 36 H 1.08998 * 110.41848 * 40.13562 * 6 5 4 37 37 H 1.09000 * 117.43953 * 199.31409 * 9 7 6 38 38 H 1.09001 * 117.44183 * 344.06085 * 9 7 6 39 39 H 1.09000 * 113.46843 * 321.93498 * 14 13 11 40 40 H 1.09004 * 113.46696 * 92.37401 * 14 13 11 41 41 H 1.09005 * 114.01315 * 87.71566 * 15 14 13 42 42 H 0.97000 * 119.99763 * 180.02562 * 19 18 16 43 43 H 1.09005 * 113.47099 * 267.62590 * 24 13 11 44 44 H 1.08997 * 113.47247 * 38.00628 * 24 13 11 45 45 H 1.09002 * 110.41441 * 319.73871 * 25 5 4 46 46 H 1.09002 * 110.41248 * 82.06172 * 25 5 4 47 47 H 1.07996 * 125.90041 * 180.22416 * 26 3 2 48 48 H 1.08997 * 109.46753 * 270.30942 * 29 28 2 49 49 H 1.08994 * 109.46849 * 30.31109 * 29 28 2 50 50 H 1.08995 * 109.46827 * 150.31153 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8432 2.5275 0.0005 5 7 1.4583 2.9176 1.3636 6 6 2.6568 3.1241 2.2167 7 6 2.1605 4.0151 3.3756 8 1 2.2023 3.6024 4.3836 9 6 2.1850 5.5324 3.1804 10 6 0.9204 4.7490 2.8163 11 6 -0.3389 4.9149 3.6271 12 8 -0.3817 4.5123 4.7703 13 7 -1.4179 5.5107 3.0817 14 6 -1.7503 6.1155 1.7830 15 6 -2.7647 7.0019 2.5134 16 6 -4.0667 7.1967 1.7802 17 1 -4.9061 6.5500 1.9891 18 6 -4.1866 8.2005 0.8427 19 7 -3.1643 8.9878 0.5879 20 14 -5.8004 8.4416 -0.0667 21 1 -6.6592 9.3868 0.6911 22 1 -5.5293 8.9937 -1.4182 23 1 -6.4956 7.1357 -0.1957 24 6 -2.7789 5.8477 3.5255 25 6 0.7760 4.2372 1.3670 26 6 3.6334 0.6560 0.0055 27 7 3.6334 -0.6523 0.0035 28 7 2.3027 -1.0900 -0.0034 29 6 1.8539 -2.4846 -0.0072 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 0.9854 2.6335 -0.6636 34 1 2.6527 3.1698 -0.3463 35 1 3.0201 2.1703 2.5993 36 1 3.4411 3.6307 1.6543 37 1 2.1493 6.1545 4.0747 38 1 2.7866 5.9237 2.3599 39 1 -0.9260 6.6751 1.3410 40 1 -2.2090 5.4166 1.0834 41 1 -2.3448 7.9305 2.9001 42 1 -3.2487 9.6942 -0.0714 43 1 -3.5142 5.0769 3.2945 44 1 -2.8277 6.1791 4.5627 45 1 1.2652 4.9199 0.6722 46 1 -0.2764 4.1218 1.1077 47 1 4.5083 1.2892 0.0103 48 1 1.7378 -2.8317 1.0195 49 1 0.8980 -2.5573 -0.5257 50 1 2.5923 -3.1024 -0.5182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278334053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:46 Heat of formation + Delta-G solvation = 104.961110 kcal Electronic energy + Delta-G solvation = -30332.100758 eV Core-core repulsion = 26362.835573 eV Total energy + Delta-G solvation = -3969.265184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.28074 -41.67778 -40.25892 -38.51363 -35.83717 -34.62188 -34.25006 -32.82590 -31.32253 -29.51172 -29.23226 -27.53403 -27.16027 -26.71295 -26.25683 -24.02644 -23.23130 -21.82076 -21.66285 -21.24713 -20.18070 -19.45175 -18.65939 -17.86244 -17.44527 -17.22169 -16.63080 -16.60119 -16.24221 -15.78947 -15.69373 -15.35016 -15.10498 -15.01458 -14.64446 -14.33005 -14.11355 -14.02375 -13.91167 -13.65842 -13.52945 -13.31232 -13.23713 -13.20099 -13.09994 -12.90811 -12.70212 -12.62683 -12.57466 -12.51468 -12.18646 -12.14862 -11.62198 -11.40563 -11.28744 -11.05733 -11.01287 -10.65632 -10.48183 -10.15260 -9.54903 -9.43747 -9.18357 -8.13675 -6.24530 0.94010 1.49274 1.50321 1.52220 1.60967 1.67729 1.79357 1.97955 2.48726 2.57523 3.11121 3.16545 3.36917 3.53238 3.60943 3.67144 3.84006 3.98100 4.10840 4.17127 4.26377 4.34933 4.39371 4.41975 4.43948 4.46969 4.48987 4.55417 4.61787 4.64670 4.68625 4.71154 4.72430 4.73527 4.80138 4.86320 4.90378 4.96422 5.01513 5.03932 5.11234 5.13446 5.18581 5.33141 5.62206 5.73106 5.81526 5.84337 6.10461 6.17199 6.26278 6.78136 6.83713 6.92056 7.18878 7.45354 8.96217 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.002676 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.841721 B =10460.815587 C =11613.045999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.101 3.899 3 C -0.246 4.246 4 C 0.129 3.871 5 N -0.515 5.515 6 C 0.076 3.924 7 C -0.123 4.123 8 H 0.109 0.891 9 C -0.101 4.101 10 C -0.186 4.186 11 C 0.574 3.426 12 O -0.602 6.602 13 N -0.638 5.638 14 C 0.123 3.877 15 C 0.024 3.976 16 C -0.527 4.527 17 H 0.066 0.934 18 C 0.023 3.977 19 N -0.917 5.917 20 Si 0.956 3.044 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.103 3.897 25 C 0.084 3.916 26 C 0.053 3.947 27 N -0.336 5.336 28 N -0.383 5.383 29 C 0.092 3.908 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.265 0.735 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.198 0.802 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.153 -16.525 -5.558 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.028 4.028 3 C -0.258 4.258 4 C 0.001 3.999 5 N -0.240 5.240 6 C -0.051 4.051 7 C -0.143 4.143 8 H 0.128 0.872 9 C -0.139 4.139 10 C -0.189 4.189 11 C 0.366 3.634 12 O -0.485 6.485 13 N -0.370 5.370 14 C 0.000 4.000 15 C 0.005 3.995 16 C -0.565 4.565 17 H 0.084 0.916 18 C -0.177 4.177 19 N -0.555 5.555 20 Si 0.782 3.218 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.188 1.188 24 C -0.019 4.019 25 C -0.044 4.044 26 C -0.133 4.133 27 N -0.157 5.157 28 N -0.166 5.166 29 C -0.048 4.048 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.215 0.785 48 H 0.098 0.902 49 H 0.127 0.873 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.692 -18.382 -4.828 22.854 hybrid contribution -0.878 1.626 -0.358 1.883 sum 11.813 -16.756 -5.187 21.148 Atomic orbital electron populations 1.20504 0.85896 1.04465 1.04000 1.21256 0.95513 0.86961 0.99089 1.19710 0.92301 0.95254 1.18546 1.20399 1.00010 0.90676 0.88848 1.65550 1.20956 1.26140 1.11332 1.22576 0.91961 0.98484 0.92054 1.23601 0.97040 0.93397 1.00239 0.87246 1.23252 0.93738 0.93057 1.03853 1.22383 0.88184 1.11041 0.97324 1.19313 0.83390 0.75074 0.85644 1.90598 1.84525 1.52803 1.20564 1.49870 1.12138 1.56550 1.18435 1.23221 0.97283 0.93950 0.85497 1.20164 0.95040 0.91768 0.92514 1.21173 0.97667 1.16003 1.21619 0.91626 1.25725 0.99471 0.94996 0.97532 1.70058 1.31963 1.19374 1.34061 0.85579 0.79901 0.78617 0.77697 1.20575 1.21006 1.18816 1.23258 0.81841 0.97553 0.99248 1.22420 1.00483 0.90023 0.91438 1.24070 0.98313 0.91973 0.98936 1.77268 0.97984 1.13724 1.26765 1.48705 1.03492 1.07176 1.57255 1.22105 1.02139 0.76334 1.04201 0.88867 0.90051 0.90047 0.89982 0.92141 0.90040 0.90998 0.88176 0.85367 0.92098 0.90142 0.94459 0.92649 0.89888 0.92882 0.91304 0.90679 0.78520 0.90212 0.87348 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 9.68 71.23 0.69 -0.73 16 2 C 0.10 2.03 6.93 41.40 0.29 2.32 16 3 C -0.25 -5.10 5.27 -20.14 -0.11 -5.20 16 4 C 0.13 2.48 4.83 85.56 0.41 2.89 16 5 N -0.52 -12.04 5.33 -886.04 -4.72 -16.76 16 6 C 0.08 1.63 5.92 86.45 0.51 2.14 16 7 C -0.12 -3.20 6.78 -9.79 -0.07 -3.26 16 8 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 9 C -0.10 -2.48 9.89 30.65 0.30 -2.18 16 10 C -0.19 -5.69 2.73 -51.88 -0.14 -5.83 16 11 C 0.57 23.20 7.72 87.65 0.68 23.88 16 12 O -0.60 -28.34 17.60 -3.03 -0.05 -28.40 16 13 N -0.64 -26.09 3.61 -858.90 -3.10 -29.19 16 14 C 0.12 5.00 6.35 83.08 0.53 5.53 16 15 C 0.02 1.14 3.76 -11.29 -0.04 1.10 16 16 C -0.53 -26.24 8.84 25.60 0.23 -26.01 16 17 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 18 C 0.02 1.18 5.46 84.65 0.46 1.64 16 19 N -0.92 -49.06 13.26 21.45 0.28 -48.78 16 20 Si 0.96 39.98 29.54 68.60 2.03 42.01 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 C 0.10 4.36 8.19 83.18 0.68 5.04 16 25 C 0.08 2.20 5.50 86.45 0.48 2.67 16 26 C 0.05 1.08 11.96 85.24 1.02 2.10 16 27 N -0.34 -7.98 12.58 -57.03 -0.72 -8.70 16 28 N -0.38 -7.74 4.01 -356.04 -1.43 -9.17 16 29 C 0.09 1.07 11.09 127.77 1.42 2.49 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.03 7.74 -2.38 -0.02 1.01 16 32 H 0.08 1.58 7.88 -2.39 -0.02 1.56 16 33 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.06 0.99 7.77 -2.39 -0.02 0.97 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.07 1.21 7.75 -2.39 -0.02 1.19 16 37 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.08 3.16 8.03 -2.38 -0.02 3.14 16 41 H 0.04 1.95 8.11 -2.38 -0.02 1.93 16 42 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 43 H 0.08 3.32 8.10 -2.38 -0.02 3.30 16 44 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 1.57 8.00 -2.39 -0.02 1.55 16 46 H 0.07 2.21 6.70 -2.39 -0.02 2.20 16 47 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 48 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 49 H 0.11 0.73 7.68 -2.39 -0.02 0.71 16 50 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -67.62 411.43 0.55 -67.07 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.92 Total: 23.35 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 7.33 Total: 8.58 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -9.68 Total: -112.60 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.05 Total: -28.40 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -67.62 0.55 -67.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278334053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.035 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds