Wall clock time and date at job start Wed Apr 1 2020 03:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35315 * 126.12550 * 2 1 4 4 C 1.50694 * 126.04050 * 0.03518 * 3 2 1 5 5 N 1.46905 * 109.47220 * 80.00152 * 4 3 2 6 6 C 1.46897 * 110.99990 * 179.97438 * 5 4 3 7 7 C 1.54896 * 129.09169 * 299.93385 * 6 5 4 8 8 C 1.57161 * 77.91583 * 180.16606 * 7 6 5 9 9 C 1.50703 * 129.24996 * 179.19845 * 8 7 6 10 10 O 1.21280 * 119.99791 * 241.28921 * 9 8 7 11 11 N 1.34778 * 120.00384 * 61.28107 * 9 8 7 12 12 C 1.47068 * 136.05256 * 359.63390 * 11 9 8 13 13 C 1.53756 * 87.88469 * 152.95996 * 12 11 9 14 14 C 1.50703 * 114.08640 * 139.77803 * 13 12 11 15 15 H 1.08002 * 120.00209 * 266.56312 * 14 13 12 16 16 C 1.37874 * 119.99607 * 86.55960 * 14 13 12 17 17 N 1.31510 * 120.00445 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47164 * 60.00240 * 18 16 14 20 20 H 1.48497 * 109.47149 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47260 * 300.00115 * 18 16 14 22 22 C 1.47061 * 136.05944 * 180.02562 * 11 9 8 23 23 C 1.54412 * 83.73355 * 42.47730 * 8 7 6 24 24 C 1.54892 * 83.77697 * 317.35661 * 8 7 6 25 25 C 1.39878 * 107.91828 * 179.90396 * 3 2 1 26 26 N 1.30843 * 108.20054 * 0.36811 * 25 3 2 27 27 N 1.34950 * 126.12738 * 180.31423 * 2 1 3 28 28 C 1.46502 * 126.03580 * 359.93827 * 27 2 1 29 29 H 1.09002 * 109.47152 * 269.71228 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.71328 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.71309 * 1 2 3 32 32 H 1.09008 * 109.47098 * 199.99840 * 4 3 2 33 33 H 1.08996 * 109.47468 * 319.99863 * 4 3 2 34 34 H 1.00901 * 110.99672 * 56.04313 * 5 4 3 35 35 H 1.08997 * 114.97459 * 291.96469 * 7 6 5 36 36 H 1.08998 * 114.97496 * 67.13455 * 7 6 5 37 37 H 1.09002 * 113.46833 * 267.69438 * 12 11 9 38 38 H 1.09001 * 113.46621 * 38.13277 * 12 11 9 39 39 H 1.08994 * 114.39555 * 272.67865 * 13 12 11 40 40 H 0.96998 * 120.00311 * 180.02562 * 17 16 14 41 41 H 1.08999 * 113.47156 * 321.86672 * 22 11 9 42 42 H 1.09000 * 113.46907 * 92.31082 * 22 11 9 43 43 H 1.08996 * 114.93194 * 205.06370 * 23 8 7 44 44 H 1.08995 * 114.98845 * 70.02736 * 23 8 7 45 45 H 1.08999 * 116.12392 * 290.12589 * 24 8 7 46 46 H 1.08999 * 113.82914 * 154.96156 * 24 8 7 47 47 H 1.07994 * 125.89973 * 180.14146 * 25 3 2 48 48 H 1.09003 * 109.46784 * 90.00240 * 28 27 2 49 49 H 1.08996 * 109.47196 * 210.00356 * 28 27 2 50 50 H 1.09001 * 109.47097 * 330.00467 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5275 0.0007 5 7 1.4651 2.9195 1.3651 6 6 1.0094 4.3155 1.4045 7 6 1.7774 5.6048 1.0208 8 6 0.3826 6.1737 1.4689 9 6 -0.0882 7.6039 1.5317 10 8 -0.4231 8.0860 2.5929 11 7 -0.1369 8.3474 0.4085 12 6 0.1779 8.1400 -1.0130 13 6 -0.8643 9.2213 -1.3428 14 6 -0.4512 10.1562 -2.4503 15 1 0.0407 11.0884 -2.2148 16 6 -0.7014 9.8214 -3.7642 17 7 -1.3008 8.6865 -4.0510 18 14 -0.1888 10.9799 -5.1370 19 1 1.2818 11.1810 -5.0918 20 1 -0.5685 10.3933 -6.4473 21 1 -0.8727 12.2866 -4.9633 22 6 -0.5215 9.7249 0.0663 23 6 0.5199 5.1446 2.6118 24 6 -0.1763 4.9773 0.6593 25 6 3.6335 0.6559 0.0022 26 7 3.6334 -0.6525 -0.0045 27 7 2.3027 -1.0900 -0.0060 28 6 1.8539 -2.4846 -0.0124 29 1 -0.3633 -0.0052 1.0277 30 1 -0.3633 -0.8874 -0.5183 31 1 -0.3633 0.8926 -0.5094 32 1 2.6512 3.1693 -0.3509 33 1 0.9823 2.6326 -0.6593 34 1 2.2276 2.7700 2.0087 35 1 2.6065 5.8603 1.6807 36 1 2.0114 5.7029 -0.0393 37 1 1.1965 8.4237 -1.2779 38 1 -0.0925 7.1489 -1.3774 39 1 -1.8827 8.8476 -1.4487 40 1 -1.4764 8.4508 -4.9753 41 1 -1.3879 10.0844 0.6216 42 1 0.3127 10.4261 0.0857 43 1 -0.4227 4.8115 3.0459 44 1 1.2867 5.3768 3.3508 45 1 -0.0643 5.0362 -0.4233 46 1 -1.1640 4.6495 0.9832 47 1 4.5084 1.2891 0.0049 48 1 1.7418 -2.8254 -1.0416 49 1 2.5902 -3.1055 0.4979 50 1 0.8958 -2.5603 0.5019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278334217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:32 Heat of formation + Delta-G solvation = 178.401532 kcal Electronic energy + Delta-G solvation = -29575.125151 eV Core-core repulsion = 25609.044582 eV Total energy + Delta-G solvation = -3966.080568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.92388 -41.49039 -39.06845 -36.88619 -35.29572 -33.59762 -32.70382 -31.91030 -29.40501 -28.10175 -26.96021 -25.95002 -25.69622 -25.60884 -24.94412 -24.46315 -23.14582 -21.07001 -20.21810 -19.61316 -18.64458 -17.79233 -16.93860 -16.71580 -16.39757 -15.93885 -15.63131 -15.31793 -14.76564 -14.60603 -14.48065 -14.26289 -14.15866 -13.88365 -13.66502 -13.52572 -13.34220 -13.20509 -12.81529 -12.70670 -12.46634 -12.29319 -12.17743 -11.85295 -11.56167 -11.42553 -11.24721 -11.21480 -11.12395 -10.96176 -10.84171 -10.72431 -10.40548 -10.23451 -10.14180 -9.65149 -9.48800 -9.23205 -9.05283 -8.68220 -8.59621 -8.45582 -7.88682 -6.20157 -4.25732 1.61772 2.24512 2.48837 2.94765 3.23947 3.29564 3.31022 3.43297 3.92093 4.20480 4.31033 4.31455 4.36001 4.42827 4.45175 4.67644 4.73376 4.74534 4.77486 4.93427 5.02535 5.04059 5.10746 5.19752 5.19966 5.28025 5.54147 5.61083 5.64573 5.66020 5.68554 5.78377 5.93148 5.97079 6.01030 6.01362 6.04574 6.14908 6.19056 6.26898 6.40355 6.42834 6.56029 6.67075 6.76819 6.80165 6.91269 7.19316 7.47250 7.53233 7.77578 8.16051 8.48772 8.76660 8.78203 9.41040 10.89474 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.002349 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.415646 B =11917.972885 C =13558.921173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.111 3.889 3 C -0.243 4.243 4 C 0.141 3.859 5 N -0.622 5.622 6 C 0.049 3.951 7 C -0.134 4.134 8 C -0.145 4.145 9 C 0.594 3.406 10 O -0.559 6.559 11 N -0.636 5.636 12 C 0.101 3.899 13 C 0.036 3.964 14 C -0.518 4.518 15 H 0.063 0.937 16 C 0.069 3.931 17 N -0.885 5.885 18 Si 0.895 3.105 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.100 3.900 23 C -0.079 4.079 24 C -0.086 4.086 25 C 0.057 3.943 26 N -0.303 5.303 27 N -0.378 5.378 28 C 0.101 3.899 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.348 0.652 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.265 0.735 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.181 0.819 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -20.036 6.963 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.017 4.017 3 C -0.255 4.255 4 C 0.012 3.988 5 N -0.250 5.250 6 C -0.044 4.044 7 C -0.175 4.175 8 C -0.149 4.149 9 C 0.382 3.618 10 O -0.439 6.439 11 N -0.368 5.368 12 C -0.022 4.022 13 C 0.016 3.984 14 C -0.556 4.556 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.522 5.522 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.022 4.022 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.129 4.129 26 N -0.123 5.123 27 N -0.160 5.160 28 C -0.041 4.041 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.167 0.833 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.198 0.802 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.386 -21.566 7.486 23.456 hybrid contribution 0.865 1.629 -0.948 2.074 sum 6.252 -19.937 6.538 21.894 Atomic orbital electron populations 1.20461 0.87006 1.03659 1.03719 1.20907 0.94649 0.86756 0.99391 1.19659 0.92153 0.95104 1.18554 1.20062 0.99449 0.89613 0.89673 1.60001 1.41649 1.15228 1.08112 1.23897 0.96360 0.86051 0.98086 1.25128 0.94928 0.95977 1.01481 1.23746 0.99186 0.92144 0.99783 1.17951 0.77566 0.84193 0.82078 1.90644 1.51082 1.73245 1.28962 1.49891 1.63352 1.15311 1.08268 1.23665 1.01233 1.01654 0.75626 1.20395 0.95722 0.92668 0.89569 1.20867 1.39611 1.04920 0.90188 0.91879 1.25018 0.94319 0.95199 0.98924 1.69935 1.40720 1.22097 1.19447 0.86604 0.79152 0.81070 0.80903 1.20077 1.21222 1.20031 1.23380 0.98699 0.82993 0.97101 1.23771 1.01226 0.92014 0.94737 1.24063 0.97531 0.91653 0.99238 1.23786 0.97651 0.92099 0.99371 1.77362 0.96622 1.12931 1.25375 1.48423 1.04003 1.05989 1.57615 1.21822 1.01019 0.77935 1.03281 0.89701 0.91623 0.89223 0.93878 0.90105 0.83280 0.90929 0.90284 0.90913 0.92216 0.91272 0.92572 0.92336 0.90803 0.90262 0.90772 0.90023 0.90365 0.80232 0.90841 0.89345 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 9.69 36.01 0.35 -0.27 16 2 C 0.11 1.05 6.93 -82.26 -0.57 0.48 16 3 C -0.24 -2.44 5.61 -105.05 -0.59 -3.03 16 4 C 0.14 1.38 5.84 -4.98 -0.03 1.35 16 5 N -0.62 -6.24 6.85 -119.06 -0.82 -7.05 16 6 C 0.05 0.57 3.75 -148.20 -0.56 0.02 16 7 C -0.13 -1.76 7.95 -24.71 -0.20 -1.95 16 8 C -0.14 -2.28 3.33 -171.00 -0.57 -2.85 16 9 C 0.59 11.91 8.19 -10.98 -0.09 11.82 16 10 O -0.56 -12.86 17.87 5.56 0.10 -12.76 16 11 N -0.64 -12.98 3.69 -185.04 -0.68 -13.66 16 12 C 0.10 2.08 7.99 -8.37 -0.07 2.01 16 13 C 0.04 0.82 3.80 -91.11 -0.35 0.48 16 14 C -0.52 -12.95 8.82 -34.44 -0.30 -13.25 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -23.64 13.26 55.43 0.74 -22.90 16 18 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.10 2.08 8.17 -8.50 -0.07 2.01 16 23 C -0.08 -1.05 7.78 -26.70 -0.21 -1.26 16 24 C -0.09 -1.18 7.84 -25.97 -0.20 -1.39 16 25 C 0.06 0.59 11.96 -17.36 -0.21 0.38 16 26 N -0.30 -3.50 12.58 30.63 0.39 -3.11 16 27 N -0.38 -3.63 4.01 -63.88 -0.26 -3.89 16 28 C 0.10 0.55 11.09 59.85 0.66 1.21 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.34 7.72 -51.93 -0.40 -0.06 16 31 H 0.09 0.65 7.37 -51.93 -0.38 0.27 16 32 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.08 0.83 7.49 -51.93 -0.39 0.44 16 34 H 0.35 3.23 8.81 -39.29 -0.35 2.89 16 35 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 36 H 0.08 1.05 7.97 -51.93 -0.41 0.63 16 37 H 0.07 1.49 8.10 -51.93 -0.42 1.06 16 38 H 0.06 1.22 7.83 -51.93 -0.41 0.81 16 39 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 40 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 43 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 44 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 45 H 0.08 1.14 7.66 -51.93 -0.40 0.74 16 46 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 47 H 0.18 1.40 8.06 -52.49 -0.42 0.97 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 0.29 7.66 -51.93 -0.40 -0.11 16 LS Contribution 416.71 15.07 6.28 6.28 Total: -1.00 -30.93 416.71 -10.49 -41.42 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.12 Total: 3.48 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.09 Total: -2.56 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.63 Total: -50.62 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.10 Total: -12.76 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -30.93 -10.49 -41.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278334217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.817 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds