Wall clock time and date at job start Wed Apr 1 2020 03:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35315 * 126.12550 * 2 1 4 4 C 1.50694 * 126.04050 * 0.03518 * 3 2 1 5 5 N 1.46905 * 109.47220 * 80.00152 * 4 3 2 6 6 C 1.46897 * 110.99990 * 179.97438 * 5 4 3 7 7 C 1.54896 * 129.09169 * 299.93385 * 6 5 4 8 8 C 1.57161 * 77.91583 * 180.16606 * 7 6 5 9 9 C 1.50703 * 129.24996 * 179.19845 * 8 7 6 10 10 O 1.21280 * 119.99791 * 241.28921 * 9 8 7 11 11 N 1.34778 * 120.00384 * 61.28107 * 9 8 7 12 12 C 1.47068 * 136.05256 * 359.63390 * 11 9 8 13 13 C 1.53756 * 87.88469 * 152.95996 * 12 11 9 14 14 C 1.50703 * 114.08640 * 139.77803 * 13 12 11 15 15 H 1.08002 * 120.00209 * 266.56312 * 14 13 12 16 16 C 1.37874 * 119.99607 * 86.55960 * 14 13 12 17 17 N 1.31510 * 120.00445 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47164 * 60.00240 * 18 16 14 20 20 H 1.48497 * 109.47149 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47260 * 300.00115 * 18 16 14 22 22 C 1.47061 * 136.05944 * 180.02562 * 11 9 8 23 23 C 1.54412 * 83.73355 * 42.47730 * 8 7 6 24 24 C 1.54892 * 83.77697 * 317.35661 * 8 7 6 25 25 C 1.39878 * 107.91828 * 179.90396 * 3 2 1 26 26 N 1.30843 * 108.20054 * 0.36811 * 25 3 2 27 27 N 1.34950 * 126.12738 * 180.31423 * 2 1 3 28 28 C 1.46502 * 126.03580 * 359.93827 * 27 2 1 29 29 H 1.09002 * 109.47152 * 269.71228 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.71328 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.71309 * 1 2 3 32 32 H 1.09008 * 109.47098 * 199.99840 * 4 3 2 33 33 H 1.08996 * 109.47468 * 319.99863 * 4 3 2 34 34 H 1.00901 * 110.99672 * 56.04313 * 5 4 3 35 35 H 1.08997 * 114.97459 * 291.96469 * 7 6 5 36 36 H 1.08998 * 114.97496 * 67.13455 * 7 6 5 37 37 H 1.09002 * 113.46833 * 267.69438 * 12 11 9 38 38 H 1.09001 * 113.46621 * 38.13277 * 12 11 9 39 39 H 1.08994 * 114.39555 * 272.67865 * 13 12 11 40 40 H 0.96998 * 120.00311 * 180.02562 * 17 16 14 41 41 H 1.08999 * 113.47156 * 321.86672 * 22 11 9 42 42 H 1.09000 * 113.46907 * 92.31082 * 22 11 9 43 43 H 1.08996 * 114.93194 * 205.06370 * 23 8 7 44 44 H 1.08995 * 114.98845 * 70.02736 * 23 8 7 45 45 H 1.08999 * 116.12392 * 290.12589 * 24 8 7 46 46 H 1.08999 * 113.82914 * 154.96156 * 24 8 7 47 47 H 1.07994 * 125.89973 * 180.14146 * 25 3 2 48 48 H 1.09003 * 109.46784 * 90.00240 * 28 27 2 49 49 H 1.08996 * 109.47196 * 210.00356 * 28 27 2 50 50 H 1.09001 * 109.47097 * 330.00467 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5275 0.0007 5 7 1.4651 2.9195 1.3651 6 6 1.0094 4.3155 1.4045 7 6 1.7774 5.6048 1.0208 8 6 0.3826 6.1737 1.4689 9 6 -0.0882 7.6039 1.5317 10 8 -0.4231 8.0860 2.5929 11 7 -0.1369 8.3474 0.4085 12 6 0.1779 8.1400 -1.0130 13 6 -0.8643 9.2213 -1.3428 14 6 -0.4512 10.1562 -2.4503 15 1 0.0407 11.0884 -2.2148 16 6 -0.7014 9.8214 -3.7642 17 7 -1.3008 8.6865 -4.0510 18 14 -0.1888 10.9799 -5.1370 19 1 1.2818 11.1810 -5.0918 20 1 -0.5685 10.3933 -6.4473 21 1 -0.8727 12.2866 -4.9633 22 6 -0.5215 9.7249 0.0663 23 6 0.5199 5.1446 2.6118 24 6 -0.1763 4.9773 0.6593 25 6 3.6335 0.6559 0.0022 26 7 3.6334 -0.6525 -0.0045 27 7 2.3027 -1.0900 -0.0060 28 6 1.8539 -2.4846 -0.0124 29 1 -0.3633 -0.0052 1.0277 30 1 -0.3633 -0.8874 -0.5183 31 1 -0.3633 0.8926 -0.5094 32 1 2.6512 3.1693 -0.3509 33 1 0.9823 2.6326 -0.6593 34 1 2.2276 2.7700 2.0087 35 1 2.6065 5.8603 1.6807 36 1 2.0114 5.7029 -0.0393 37 1 1.1965 8.4237 -1.2779 38 1 -0.0925 7.1489 -1.3774 39 1 -1.8827 8.8476 -1.4487 40 1 -1.4764 8.4508 -4.9753 41 1 -1.3879 10.0844 0.6216 42 1 0.3127 10.4261 0.0857 43 1 -0.4227 4.8115 3.0459 44 1 1.2867 5.3768 3.3508 45 1 -0.0643 5.0362 -0.4233 46 1 -1.1640 4.6495 0.9832 47 1 4.5084 1.2891 0.0049 48 1 1.7418 -2.8254 -1.0416 49 1 2.5902 -3.1055 0.4979 50 1 0.8958 -2.5603 0.5019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278334217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:30 Heat of formation + Delta-G solvation = 159.475077 kcal Electronic energy + Delta-G solvation = -29575.945863 eV Core-core repulsion = 25609.044582 eV Total energy + Delta-G solvation = -3966.901281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.02744 -42.19878 -40.72625 -38.57956 -36.10080 -34.63265 -34.23283 -32.58517 -31.12293 -28.82338 -27.55344 -27.48816 -26.92795 -26.74477 -26.57038 -25.44063 -24.43371 -21.87864 -21.72385 -20.30178 -19.93059 -19.15375 -18.67480 -17.89604 -17.34857 -17.16653 -16.61509 -16.56679 -16.17917 -16.14364 -15.46223 -15.26864 -15.18026 -14.89416 -14.87347 -14.45210 -14.25579 -14.15758 -13.91776 -13.64411 -13.33027 -13.27424 -13.25841 -13.15942 -12.94648 -12.75156 -12.72873 -12.61718 -12.37099 -12.26090 -12.18287 -12.16115 -11.51179 -11.42368 -11.30885 -11.23214 -11.03318 -10.77436 -10.51014 -10.16341 -9.59082 -9.50408 -9.23066 -8.15002 -6.25941 0.93026 1.42703 1.49935 1.50942 1.58034 1.67044 1.73798 1.92492 2.47263 2.94183 3.14944 3.25677 3.27182 3.35940 3.49916 3.53836 3.65443 3.77859 3.85348 4.17996 4.26311 4.37476 4.39556 4.41824 4.43512 4.50705 4.54634 4.57700 4.61476 4.66232 4.67470 4.71343 4.76074 4.82994 4.84804 4.88068 4.92073 4.96634 4.97959 5.03896 5.05473 5.13077 5.18329 5.32722 5.60282 5.70712 5.82625 6.02638 6.16897 6.24341 6.40258 6.76571 6.81980 6.85961 7.14587 7.43813 8.94652 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.002349 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.415646 B =11917.972885 C =13558.921173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.108 3.892 3 C -0.258 4.258 4 C 0.148 3.852 5 N -0.614 5.614 6 C 0.083 3.917 7 C -0.125 4.125 8 C -0.178 4.178 9 C 0.589 3.411 10 O -0.594 6.594 11 N -0.638 5.638 12 C 0.119 3.881 13 C 0.025 3.975 14 C -0.528 4.528 15 H 0.066 0.934 16 C 0.023 3.977 17 N -0.916 5.916 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.104 3.896 23 C -0.074 4.074 24 C -0.085 4.085 25 C 0.050 3.950 26 N -0.337 5.337 27 N -0.382 5.382 28 C 0.091 3.909 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.356 0.644 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.196 0.804 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 -21.195 6.921 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.021 4.021 3 C -0.270 4.270 4 C 0.019 3.981 5 N -0.243 5.243 6 C -0.010 4.010 7 C -0.166 4.166 8 C -0.182 4.182 9 C 0.380 3.620 10 O -0.476 6.476 11 N -0.370 5.370 12 C -0.003 4.003 13 C 0.005 3.995 14 C -0.566 4.566 15 H 0.085 0.915 16 C -0.177 4.177 17 N -0.554 5.554 18 Si 0.782 3.218 19 H -0.193 1.193 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.019 4.019 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.135 4.135 26 N -0.158 5.158 27 N -0.165 5.165 28 C -0.049 4.049 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.177 0.823 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.213 0.787 48 H 0.102 0.898 49 H 0.110 0.890 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.250 -22.745 7.449 24.736 hybrid contribution 0.541 1.962 -0.898 2.225 sum 6.790 -20.783 6.551 22.824 Atomic orbital electron populations 1.20518 0.85323 1.04455 1.04285 1.21324 0.95737 0.86699 0.98352 1.19734 0.92292 0.95291 1.19689 1.19982 0.99266 0.89724 0.89133 1.60009 1.42210 1.13440 1.08677 1.23494 0.94790 0.86475 0.96284 1.25133 0.93755 0.96076 1.01624 1.23734 1.01640 0.90251 1.02565 1.18630 0.76545 0.85670 0.81151 1.90612 1.52590 1.74431 1.29997 1.49906 1.63470 1.15127 1.08453 1.23378 1.00581 1.00751 0.75621 1.20268 0.94868 0.93779 0.90554 1.21160 1.39333 1.05267 0.90879 0.91542 1.25730 0.94418 0.96517 1.01077 1.70042 1.41934 1.23625 1.19802 0.85636 0.79036 0.79102 0.78040 1.19273 1.21283 1.19765 1.23290 0.99133 0.83745 0.95685 1.23777 1.01686 0.91068 0.94719 1.24069 0.98461 0.90855 0.98936 1.24121 0.98474 0.92055 0.98862 1.77300 0.98146 1.13652 1.26744 1.48749 1.03433 1.07321 1.56954 1.22143 1.02164 0.76169 1.04435 0.89121 0.89653 0.89636 0.93656 0.90580 0.82291 0.89915 0.90378 0.90293 0.92176 0.94168 0.92629 0.92422 0.89633 0.90200 0.89916 0.90451 0.90261 0.78677 0.89765 0.89046 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.69 71.24 0.69 -0.33 16 2 C 0.11 1.85 6.93 41.41 0.29 2.14 16 3 C -0.26 -4.79 5.61 -20.14 -0.11 -4.91 16 4 C 0.15 2.62 5.84 85.55 0.50 3.12 16 5 N -0.61 -10.93 6.85 -530.60 -3.63 -14.56 16 6 C 0.08 1.77 3.75 -7.23 -0.03 1.74 16 7 C -0.13 -3.05 7.95 31.90 0.25 -2.80 16 8 C -0.18 -5.46 3.33 -62.87 -0.21 -5.67 16 9 C 0.59 23.66 8.19 87.66 0.72 24.37 16 10 O -0.59 -27.52 17.87 -3.03 -0.05 -27.57 16 11 N -0.64 -26.10 3.69 -857.74 -3.16 -29.26 16 12 C 0.12 4.92 7.99 83.27 0.67 5.58 16 13 C 0.02 1.15 3.80 -11.11 -0.04 1.11 16 14 C -0.53 -26.41 8.82 25.60 0.23 -26.19 16 15 H 0.07 3.21 7.81 -2.91 -0.02 3.19 16 16 C 0.02 1.18 5.46 84.65 0.46 1.64 16 17 N -0.92 -49.26 13.26 21.45 0.28 -48.98 16 18 Si 0.96 40.23 29.54 68.60 2.03 42.25 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C 0.10 4.33 8.17 83.19 0.68 5.01 16 23 C -0.07 -1.84 7.78 30.61 0.24 -1.61 16 24 C -0.08 -2.23 7.84 31.09 0.24 -1.98 16 25 C 0.05 0.98 11.96 85.24 1.02 2.00 16 26 N -0.34 -7.49 12.58 -57.02 -0.72 -8.21 16 27 N -0.38 -6.77 4.01 -356.02 -1.43 -8.20 16 28 C 0.09 0.82 11.09 127.77 1.42 2.24 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.64 7.72 -2.39 -0.02 0.62 16 31 H 0.08 1.09 7.37 -2.38 -0.02 1.07 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.08 1.44 7.49 -2.39 -0.02 1.42 16 34 H 0.36 5.69 8.81 -89.69 -0.79 4.90 16 35 H 0.08 1.87 7.91 -2.39 -0.02 1.85 16 36 H 0.08 1.93 7.97 -2.39 -0.02 1.91 16 37 H 0.08 3.17 8.10 -2.39 -0.02 3.15 16 38 H 0.06 2.46 7.83 -2.39 -0.02 2.44 16 39 H 0.04 2.10 8.11 -2.39 -0.02 2.08 16 40 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 41 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.09 3.37 8.10 -2.39 -0.02 3.35 16 43 H 0.08 1.98 7.94 -2.39 -0.02 1.96 16 44 H 0.08 1.92 7.91 -2.39 -0.02 1.90 16 45 H 0.08 2.10 7.66 -2.39 -0.02 2.08 16 46 H 0.08 2.05 7.93 -2.39 -0.02 2.03 16 47 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 48 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.11 0.45 7.66 -2.39 -0.02 0.43 16 Total: -1.00 -66.15 416.71 0.48 -65.67 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.16 Total: 23.37 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 7.01 Total: 5.49 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -8.66 Total: -109.21 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Total: -66.15 0.48 -65.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278334217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.148 kcal (2) G-P(sol) polarization free energy of solvation -66.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds