Wall clock time and date at job start Wed Apr 1 2020 03:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30832 * 125.90317 * 2 1 4 4 N 1.40086 * 108.21049 * 180.26007 * 3 2 1 5 5 C 1.46498 * 126.04036 * 179.69905 * 4 3 2 6 6 C 1.34946 * 107.91874 * 359.71764 * 4 3 2 7 7 C 1.35320 * 107.75176 * 0.02562 * 6 4 3 8 8 C 1.50700 * 126.04060 * 180.02562 * 7 6 4 9 9 N 1.46895 * 109.46876 * 260.01728 * 8 7 6 10 10 C 1.48567 * 110.99870 * 54.58864 * 9 8 7 11 11 C 1.54374 * 104.59423 * 159.03927 * 10 9 8 12 12 H 1.09002 * 118.16136 * 115.85237 * 11 10 9 13 13 C 1.52999 * 118.12732 * 272.76519 * 11 10 9 14 14 C 1.52998 * 60.54596 * 91.66912 * 13 11 10 15 15 C 1.50703 * 119.52257 * 113.29110 * 14 13 11 16 16 O 1.21281 * 120.00472 * 289.88007 * 15 14 13 17 17 N 1.34782 * 119.99648 * 109.87687 * 15 14 13 18 18 C 1.47064 * 136.05985 * 359.63294 * 17 15 14 19 19 C 1.53241 * 88.08351 * 207.19788 * 18 17 15 20 20 C 1.50699 * 114.50717 * 220.45309 * 19 18 17 21 21 H 1.08003 * 119.99708 * 93.84991 * 20 19 18 22 22 C 1.37868 * 120.00038 * 273.84640 * 20 19 18 23 23 N 1.31514 * 120.00330 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46782 * 60.00273 * 24 22 20 26 26 H 1.48497 * 109.47403 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47190 * 300.00452 * 24 22 20 28 28 C 1.47071 * 136.05287 * 179.97438 * 17 15 14 29 29 C 1.48566 * 110.99974 * 170.00096 * 9 8 7 30 30 H 1.08998 * 109.46802 * 270.21166 * 1 2 3 31 31 H 1.08996 * 109.46697 * 30.20845 * 1 2 3 32 32 H 1.08993 * 109.47361 * 150.20857 * 1 2 3 33 33 H 1.08998 * 109.46771 * 270.02218 * 5 4 3 34 34 H 1.08996 * 109.47121 * 30.02502 * 5 4 3 35 35 H 1.09003 * 109.46565 * 150.02414 * 5 4 3 36 36 H 1.08003 * 126.12676 * 180.02562 * 6 4 3 37 37 H 1.09005 * 109.46488 * 140.02231 * 8 7 6 38 38 H 1.08998 * 109.47088 * 20.02282 * 8 7 6 39 39 H 1.09003 * 110.40839 * 277.81129 * 10 9 8 40 40 H 1.08989 * 110.41133 * 40.25805 * 10 9 8 41 41 H 1.09003 * 117.44371 * 344.02376 * 13 11 10 42 42 H 1.08995 * 117.41171 * 199.33088 * 13 11 10 43 43 H 1.09000 * 113.46735 * 321.93626 * 18 17 15 44 44 H 1.09001 * 113.46814 * 92.37242 * 18 17 15 45 45 H 1.09000 * 114.01164 * 87.71168 * 19 18 17 46 46 H 0.97001 * 120.00605 * 179.97438 * 23 22 20 47 47 H 1.09006 * 113.46225 * 267.62083 * 28 17 15 48 48 H 1.08996 * 113.47028 * 38.00890 * 28 17 15 49 49 H 1.09004 * 110.40902 * 319.74648 * 29 9 8 50 50 H 1.08997 * 110.40970 * 82.06206 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0597 0.0000 4 7 3.6089 0.6340 -0.0060 5 6 4.7900 1.5006 -0.0143 6 6 3.6142 -0.7154 -0.0033 7 6 2.3271 -1.1331 0.0036 8 6 1.8599 -2.5658 0.0093 9 7 1.4736 -2.9602 -1.3520 10 6 2.5807 -2.7147 -2.3118 11 6 2.2655 -3.6326 -3.5123 12 1 2.0473 -3.1663 -4.4731 13 6 2.7787 -5.0735 -3.4728 14 6 1.3814 -4.7575 -2.9355 15 6 0.1707 -5.2999 -3.6503 16 8 -0.1365 -4.8639 -4.7396 17 7 -0.5707 -6.2698 -3.0792 18 6 -0.5270 -7.0361 -1.8247 19 6 -1.2540 -8.1716 -2.5530 20 6 -2.3192 -8.8569 -1.7365 21 1 -3.3468 -8.5324 -1.8081 22 6 -1.9818 -9.8982 -0.8982 23 7 -0.7304 -10.2931 -0.8107 24 14 -3.3021 -10.7473 0.1144 25 1 -4.3216 -11.3329 -0.7927 26 1 -2.6851 -11.8255 0.9280 27 1 -3.9491 -9.7582 1.0134 28 6 -1.7762 -7.0317 -3.4390 29 6 1.2367 -4.4245 -1.4351 30 1 -0.3633 0.0038 1.0277 31 1 -0.3632 0.8881 -0.5171 32 1 -0.3634 -0.8918 -0.5105 33 1 5.0773 1.7134 -1.0440 34 1 4.5594 2.4341 0.4989 35 1 5.6122 0.9989 0.4960 36 1 4.4891 -1.3487 -0.0062 37 1 1.0016 -2.6654 0.6738 38 1 2.6668 -3.2097 0.3590 39 1 2.5887 -1.6703 -2.6238 40 1 3.5374 -2.9866 -1.8662 41 1 3.5549 -5.3105 -2.7452 42 1 2.8434 -5.6092 -4.4198 43 1 0.4834 -7.2997 -1.5121 44 1 -1.1139 -6.5892 -1.0223 45 1 -0.5893 -8.8673 -3.0652 46 1 -0.4930 -11.0255 -0.2207 47 1 -2.6990 -6.5835 -3.0704 48 1 -1.8265 -7.2907 -4.4965 49 1 1.9832 -4.9640 -0.8521 50 1 0.2336 -4.6677 -1.0848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278346329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:49 Heat of formation + Delta-G solvation = 105.813354 kcal Electronic energy + Delta-G solvation = -30234.241586 eV Core-core repulsion = 26265.013358 eV Total energy + Delta-G solvation = -3969.228228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.29963 -41.66818 -40.26802 -38.52257 -35.95298 -34.62427 -34.51312 -31.63070 -31.30604 -30.35622 -29.40906 -27.93094 -27.13093 -26.66011 -25.70793 -23.99657 -23.22267 -21.81303 -21.61085 -21.27695 -20.29578 -19.46438 -18.66482 -17.90228 -17.38232 -17.26635 -16.62772 -16.58906 -16.25438 -15.84037 -15.71112 -15.49939 -15.02562 -14.79740 -14.66636 -14.28901 -14.19287 -14.09885 -13.93990 -13.85444 -13.31735 -13.24176 -13.23309 -13.07894 -12.94520 -12.89840 -12.85307 -12.71515 -12.56354 -12.38273 -12.18945 -12.16143 -11.63813 -11.41143 -11.30991 -11.06598 -11.02081 -10.65492 -10.47571 -10.13557 -9.55478 -9.46284 -9.18424 -8.13717 -6.24555 0.95615 1.50033 1.51076 1.51926 1.59056 1.70328 1.72864 1.97268 2.48673 2.56988 3.08846 3.16278 3.35698 3.52299 3.60603 3.63952 3.92063 3.99074 4.07816 4.24689 4.25921 4.31862 4.41134 4.42397 4.45154 4.45744 4.50164 4.54970 4.60861 4.67528 4.70358 4.70669 4.71750 4.80957 4.82801 4.86647 4.90512 4.97178 5.02859 5.08020 5.11956 5.14666 5.17236 5.21537 5.61868 5.72577 5.83995 5.84277 6.07758 6.19997 6.26177 6.80224 6.83231 6.91767 7.18401 7.45171 8.95981 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002470 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.458320 B =11333.243980 C =12143.858186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.080 3.920 3 N -0.341 5.341 4 N -0.381 5.381 5 C 0.095 3.905 6 C 0.072 3.928 7 C -0.248 4.248 8 C 0.129 3.871 9 N -0.517 5.517 10 C 0.084 3.916 11 C -0.122 4.122 12 H 0.108 0.892 13 C -0.102 4.102 14 C -0.187 4.187 15 C 0.573 3.427 16 O -0.602 6.602 17 N -0.638 5.638 18 C 0.123 3.877 19 C 0.025 3.975 20 C -0.528 4.528 21 H 0.065 0.935 22 C 0.024 3.976 23 N -0.916 5.916 24 Si 0.956 3.044 25 H -0.273 1.273 26 H -0.286 1.286 27 H -0.268 1.268 28 C 0.103 3.897 29 C 0.084 3.916 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.205 0.795 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.265 0.735 47 H 0.082 0.918 48 H 0.053 0.947 49 H 0.071 0.929 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.565 18.440 5.433 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 N -0.165 5.165 4 N -0.162 5.162 5 C -0.045 4.045 6 C -0.076 4.076 7 C -0.260 4.260 8 C 0.001 3.999 9 N -0.241 5.241 10 C -0.043 4.043 11 C -0.141 4.141 12 H 0.126 0.874 13 C -0.140 4.140 14 C -0.191 4.191 15 C 0.365 3.635 16 O -0.486 6.486 17 N -0.370 5.370 18 C 0.000 4.000 19 C 0.006 3.994 20 C -0.566 4.566 21 H 0.083 0.917 22 C -0.177 4.177 23 N -0.554 5.554 24 Si 0.782 3.218 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.192 1.192 28 C -0.019 4.019 29 C -0.043 4.043 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.222 0.778 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.147 0.853 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.345 20.422 4.780 25.411 hybrid contribution -0.257 -1.854 0.359 1.906 sum 14.088 18.568 5.139 23.867 Atomic orbital electron populations 1.20190 0.86355 1.03337 1.03203 1.22490 0.97537 0.90509 0.98074 1.77258 0.87896 1.23708 1.27648 1.48680 1.05579 1.05482 1.56424 1.22164 0.82942 0.94963 1.04432 1.22816 0.99568 0.85078 1.00151 1.19862 0.92273 0.95503 1.18323 1.20422 0.99956 0.90407 0.89146 1.65612 1.38095 1.13499 1.06932 1.22453 0.93386 0.98454 0.90036 1.23620 1.00819 0.89553 1.00115 0.87361 1.23229 0.91908 0.95906 1.02910 1.22280 0.91543 1.08506 0.96767 1.19337 0.83291 0.76531 0.84347 1.90597 1.73276 1.61064 1.23615 1.49869 1.28081 1.35869 1.23208 1.23221 1.00479 0.89715 0.86540 1.20166 0.95261 0.90712 0.93303 1.21145 0.94267 1.16841 1.24359 0.91684 1.25715 0.97250 0.96960 0.97746 1.70041 1.18352 1.28440 1.38562 0.85642 0.79280 0.78192 0.78734 1.19877 1.21202 1.19243 1.23266 0.88237 0.90819 0.99619 1.22440 1.02309 0.88774 0.90822 0.89777 0.91479 0.90183 0.89861 0.89475 0.86535 0.77801 0.90079 0.92193 0.90463 0.90972 0.85270 0.88205 0.91986 0.90291 0.94331 0.92619 0.89970 0.92818 0.91148 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 10.26 71.24 0.73 -0.78 16 2 C 0.08 1.86 7.22 43.11 0.31 2.17 16 3 N -0.34 -8.31 12.57 -47.38 -0.60 -8.91 16 4 N -0.38 -6.55 4.01 -369.57 -1.48 -8.03 16 5 C 0.09 0.75 11.47 127.77 1.47 2.21 16 6 C 0.07 1.08 11.11 83.54 0.93 2.01 16 7 C -0.25 -4.88 4.51 -20.14 -0.09 -4.97 16 8 C 0.13 2.47 5.17 85.56 0.44 2.92 16 9 N -0.52 -12.25 5.48 -886.05 -4.86 -17.10 16 10 C 0.08 1.75 5.15 86.45 0.44 2.20 16 11 C -0.12 -3.13 6.85 -9.90 -0.07 -3.20 16 12 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 13 C -0.10 -2.47 9.86 30.59 0.30 -2.17 16 14 C -0.19 -5.77 2.70 -52.03 -0.14 -5.91 16 15 C 0.57 23.43 7.68 87.66 0.67 24.11 16 16 O -0.60 -28.70 17.66 -3.03 -0.05 -28.75 16 17 N -0.64 -26.47 3.62 -858.70 -3.10 -29.57 16 18 C 0.12 5.06 6.40 83.10 0.53 5.60 16 19 C 0.02 1.17 3.76 -11.29 -0.04 1.13 16 20 C -0.53 -26.58 8.84 25.60 0.23 -26.35 16 21 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 22 C 0.02 1.22 5.46 84.65 0.46 1.68 16 23 N -0.92 -49.20 13.26 21.44 0.28 -48.91 16 24 Si 0.96 40.33 29.54 68.60 2.03 42.35 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 28 C 0.10 4.41 8.19 83.19 0.68 5.09 16 29 C 0.08 2.23 5.50 86.45 0.48 2.71 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.80 7.96 -2.39 -0.02 1.78 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.06 0.94 7.87 -2.39 -0.02 0.92 16 39 H 0.08 1.73 7.92 -2.39 -0.02 1.71 16 40 H 0.07 1.13 7.99 -2.39 -0.02 1.11 16 41 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.08 3.17 8.06 -2.39 -0.02 3.15 16 45 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 46 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 47 H 0.08 3.35 8.10 -2.38 -0.02 3.33 16 48 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.07 1.60 7.82 -2.38 -0.02 1.58 16 50 H 0.07 2.22 6.84 -2.39 -0.02 2.20 16 Total: -1.00 -69.41 411.98 0.47 -68.93 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.92 Total: 21.56 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 7.33 Total: 8.44 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -9.76 Total: -112.53 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.05 Total: -28.75 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.35 kcal Total: -69.41 0.47 -68.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278346329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.748 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds