Wall clock time and date at job start Wed Apr 1 2020 03:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30838 * 125.90147 * 2 1 4 4 N 1.40085 * 108.20823 * 180.02562 * 3 2 1 5 5 C 1.46502 * 126.03541 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92473 * 359.75285 * 4 3 2 7 7 C 1.35322 * 107.74596 * 0.39592 * 6 4 3 8 8 C 1.50694 * 126.03992 * 179.87039 * 7 6 4 9 9 N 1.46896 * 109.47323 * 264.60804 * 8 7 6 10 10 C 1.48873 * 110.69212 * 280.08810 * 9 8 7 11 11 C 1.54941 * 103.07636 * 200.19058 * 10 9 8 12 12 C 1.54556 * 102.94384 * 37.71084 * 11 10 9 13 13 H 1.09003 * 117.57182 * 117.01721 * 12 11 10 14 14 C 1.52931 * 118.92378 * 274.40845 * 12 11 10 15 15 C 1.47947 * 111.00516 * 163.12151 * 9 8 7 16 16 C 1.50705 * 117.36812 * 5.35711 * 15 9 8 17 17 O 1.21283 * 119.99979 * 240.82668 * 16 15 9 18 18 N 1.34777 * 120.00358 * 60.82397 * 16 15 9 19 19 C 1.47070 * 136.05279 * 5.03520 * 18 16 15 20 20 C 1.53761 * 87.88548 * 152.96124 * 19 18 16 21 21 C 1.50698 * 114.08480 * 139.77534 * 20 19 18 22 22 H 1.08001 * 120.00625 * 266.55657 * 21 20 19 23 23 C 1.37883 * 119.99814 * 86.56999 * 21 20 19 24 24 N 1.31514 * 119.99803 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00041 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47381 * 59.99053 * 25 23 21 27 27 H 1.48500 * 109.47243 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46971 * 299.99179 * 25 23 21 29 29 C 1.47059 * 136.05862 * 185.40100 * 18 16 15 30 30 H 1.08999 * 109.47358 * 275.56969 * 1 2 3 31 31 H 1.08998 * 109.47300 * 35.57260 * 1 2 3 32 32 H 1.09001 * 109.47192 * 155.56519 * 1 2 3 33 33 H 1.08992 * 109.47619 * 89.97302 * 5 4 3 34 34 H 1.09002 * 109.46723 * 209.97646 * 5 4 3 35 35 H 1.08999 * 109.46704 * 329.96926 * 5 4 3 36 36 H 1.07998 * 126.12976 * 180.23772 * 6 4 3 37 37 H 1.08999 * 109.47555 * 144.60754 * 8 7 6 38 38 H 1.09004 * 109.47529 * 24.60512 * 8 7 6 39 39 H 1.08999 * 110.52361 * 81.90401 * 10 9 8 40 40 H 1.08998 * 110.95300 * 318.66937 * 10 9 8 41 41 H 1.09008 * 110.71397 * 279.34844 * 11 10 9 42 42 H 1.09002 * 110.72295 * 156.08242 * 11 10 9 43 43 H 1.09007 * 117.45937 * 343.71570 * 14 12 11 44 44 H 1.08999 * 117.46021 * 198.94793 * 14 12 11 45 45 H 1.08999 * 113.46627 * 267.69170 * 19 18 16 46 46 H 1.08994 * 113.46891 * 38.13293 * 19 18 16 47 47 H 1.09000 * 114.57629 * 272.66666 * 20 19 18 48 48 H 0.97001 * 120.00219 * 180.02562 * 24 23 21 49 49 H 1.08997 * 113.47125 * 321.87294 * 29 18 16 50 50 H 1.09006 * 113.46857 * 92.30876 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 3.6142 -0.7153 0.0046 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5657 -0.0003 9 7 1.5906 -2.9932 -1.3796 10 6 0.2602 -2.5020 -1.8324 11 6 -0.0744 -3.4398 -3.0195 12 6 0.4712 -4.8061 -2.5458 13 1 -0.2457 -5.6159 -2.4099 14 6 1.9449 -5.1372 -2.7849 15 6 1.5241 -4.4682 -1.4743 16 6 1.6089 -5.2495 -0.1883 17 8 2.5150 -6.0370 -0.0159 18 7 0.6780 -5.0729 0.7701 19 6 -0.5747 -4.3139 0.9025 20 6 -1.0368 -5.3648 1.9254 21 6 -1.7686 -4.7893 3.1105 22 1 -1.2278 -4.5460 4.0131 23 6 -3.1288 -4.5737 3.0425 24 7 -3.7873 -4.8697 1.9432 25 14 -4.0360 -3.8611 4.5116 26 1 -3.4767 -2.5248 4.8383 27 1 -5.4785 -3.7271 4.1852 28 1 -3.8741 -4.7644 5.6791 29 6 0.4710 -5.5495 2.1459 30 1 -0.3634 0.0997 1.0228 31 1 -0.3634 0.8359 -0.5978 32 1 -0.3633 -0.9356 -0.4251 33 1 5.0828 1.7155 1.0274 34 1 5.6093 0.9983 -0.5143 35 1 4.5563 2.4334 -0.5139 36 1 4.4891 -1.3486 0.0092 37 1 0.9481 -2.6505 0.5909 38 1 2.6336 -3.2002 0.4322 39 1 0.3286 -1.4670 -2.1671 40 1 -0.4826 -2.6033 -1.0411 41 1 0.4373 -3.1131 -3.9249 42 1 -1.1513 -3.4892 -3.1804 43 1 2.4859 -4.5280 -3.5091 44 1 2.2377 -6.1863 -2.7424 45 1 -0.4375 -3.3214 1.3318 46 1 -1.1726 -4.3006 -0.0086 47 1 -1.5344 -6.2319 1.4912 48 1 -4.7441 -4.7176 1.8952 49 1 0.7640 -6.5888 2.2940 50 1 0.8839 -4.8827 2.9030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278348373.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:24 Heat of formation + Delta-G solvation = 135.607678 kcal Electronic energy + Delta-G solvation = -31893.254790 eV Core-core repulsion = 27925.318541 eV Total energy + Delta-G solvation = -3967.936249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33079 -40.51734 -38.56121 -36.94464 -34.75770 -33.23555 -32.70965 -31.20745 -30.03355 -29.37129 -28.94586 -26.24453 -25.46745 -25.14763 -23.97107 -23.18276 -22.05647 -20.80255 -20.24867 -19.93719 -19.44208 -17.74441 -17.20777 -16.70831 -16.40718 -15.67631 -15.53502 -15.16197 -14.70215 -14.63869 -14.44071 -14.30453 -13.75208 -13.66746 -13.44236 -13.28597 -13.06737 -12.90545 -12.45987 -12.38889 -12.27933 -12.26476 -12.05839 -11.96511 -11.61258 -11.55455 -11.35563 -11.14778 -10.97558 -10.88399 -10.81768 -10.51336 -10.45531 -10.24199 -10.18331 -9.52167 -9.28089 -9.14512 -9.01249 -8.61875 -8.40405 -8.06481 -7.93102 -6.22313 -4.28142 1.91241 2.50183 2.69057 2.90422 3.22768 3.28603 3.29749 3.40343 3.81086 4.10762 4.29981 4.42537 4.71165 4.76952 4.84074 4.94900 4.96518 4.99553 5.05005 5.10571 5.19987 5.28116 5.35696 5.40871 5.44285 5.53141 5.68640 5.75996 5.83337 5.88026 5.90574 5.96999 5.99774 6.02748 6.04507 6.10777 6.14715 6.18983 6.23678 6.32080 6.39874 6.48801 6.57428 6.73844 6.76282 6.92016 7.03587 7.12065 7.49854 7.74958 7.77614 8.12854 8.42701 8.69281 8.75657 9.39017 10.87121 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.004315 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.792833 B = 6487.332114 C = 8038.252601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.089 3.911 3 N -0.303 5.303 4 N -0.382 5.382 5 C 0.106 3.894 6 C 0.069 3.931 7 C -0.216 4.216 8 C 0.110 3.890 9 N -0.460 5.460 10 C 0.027 3.973 11 C -0.093 4.093 12 C -0.159 4.159 13 H 0.116 0.884 14 C -0.101 4.101 15 C -0.009 4.009 16 C 0.564 3.436 17 O -0.556 6.556 18 N -0.638 5.638 19 C 0.097 3.903 20 C 0.039 3.961 21 C -0.519 4.519 22 H 0.063 0.937 23 C 0.071 3.929 24 N -0.884 5.884 25 Si 0.893 3.107 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.275 1.275 29 C 0.098 3.902 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.171 0.829 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.265 0.735 49 H 0.058 0.942 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 8.939 -8.501 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 N -0.126 5.126 4 N -0.164 5.164 5 C -0.036 4.036 6 C -0.077 4.077 7 C -0.228 4.228 8 C -0.018 4.018 9 N -0.185 5.185 10 C -0.100 4.100 11 C -0.130 4.130 12 C -0.179 4.179 13 H 0.134 0.866 14 C -0.139 4.139 15 C -0.102 4.102 16 C 0.351 3.649 17 O -0.435 6.435 18 N -0.371 5.371 19 C -0.025 4.025 20 C 0.020 3.980 21 C -0.557 4.557 22 H 0.081 0.919 23 C -0.133 4.133 24 N -0.521 5.521 25 Si 0.721 3.279 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.200 1.200 29 C -0.024 4.024 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.188 0.812 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.490 10.095 -8.949 17.720 hybrid contribution -0.913 -0.624 1.338 1.736 sum 10.577 9.471 -7.611 16.108 Atomic orbital electron populations 1.20516 0.86766 1.03912 1.03558 1.22232 0.96795 0.90196 0.98587 1.77264 0.86334 1.22714 1.26289 1.48280 1.05470 1.04667 1.57987 1.21775 0.83795 0.94922 1.03060 1.22270 0.99273 0.84624 1.01535 1.19732 0.91791 0.95405 1.15866 1.20722 1.01354 0.90760 0.88976 1.64798 1.28440 1.03124 1.22109 1.23938 0.89607 0.99555 0.96890 1.22116 1.01021 0.91882 0.98017 1.23772 0.92238 0.99889 1.01953 0.86624 1.23066 0.94883 1.00922 0.95041 1.22706 1.08528 0.89151 0.89797 1.19054 0.80271 0.82218 0.83363 1.90635 1.34661 1.37835 1.80324 1.50036 1.23805 1.48595 1.14655 1.23782 0.80651 0.97785 1.00310 1.20359 0.88687 0.94767 0.94237 1.20861 0.92716 1.43096 0.99037 0.91906 1.24995 0.97490 0.94831 0.95935 1.69933 1.08870 1.46732 1.26536 0.86630 0.78644 0.79791 0.82854 1.20016 1.21180 1.20049 1.23374 0.98952 0.98634 0.81404 0.90219 0.90952 0.89581 0.91073 0.89679 0.89540 0.81224 0.91343 0.90793 0.89434 0.91933 0.90603 0.90121 0.87927 0.87629 0.90733 0.92138 0.91336 0.92547 0.92390 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.75 36.00 0.35 -0.80 16 2 C 0.09 1.31 7.01 -82.41 -0.58 0.73 16 3 N -0.30 -4.57 12.58 33.67 0.42 -4.15 16 4 N -0.38 -4.82 4.01 -68.16 -0.27 -5.10 16 5 C 0.11 0.81 11.47 59.85 0.69 1.50 16 6 C 0.07 0.90 11.40 -17.22 -0.20 0.71 16 7 C -0.22 -3.19 5.46 -105.05 -0.57 -3.76 16 8 C 0.11 1.73 3.90 -4.98 -0.02 1.71 16 9 N -0.46 -6.88 5.18 -217.39 -1.13 -8.01 16 10 C 0.03 0.36 4.57 -1.70 -0.01 0.35 16 11 C -0.09 -1.12 6.87 -24.89 -0.17 -1.29 16 12 C -0.16 -2.23 6.89 -89.32 -0.62 -2.84 16 13 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 14 C -0.10 -1.40 9.92 -26.74 -0.27 -1.67 16 15 C -0.01 -0.14 2.65 -131.63 -0.35 -0.49 16 16 C 0.56 11.04 5.76 -10.98 -0.06 10.97 16 17 O -0.56 -12.53 17.72 5.56 0.10 -12.43 16 18 N -0.64 -12.50 3.03 -185.04 -0.56 -13.06 16 19 C 0.10 1.93 5.73 -8.36 -0.05 1.88 16 20 C 0.04 0.87 3.80 -91.12 -0.35 0.53 16 21 C -0.52 -12.76 8.82 -34.44 -0.30 -13.06 16 22 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 23 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 24 N -0.88 -23.19 13.26 55.43 0.74 -22.46 16 25 Si 0.89 19.60 29.54 -169.99 -5.02 14.57 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 29 C 0.10 2.00 8.18 -8.51 -0.07 1.93 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.09 3.95 -51.93 -0.21 0.89 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.07 1.15 3.95 -51.93 -0.21 0.95 16 38 H 0.07 1.28 6.96 -51.93 -0.36 0.92 16 39 H 0.09 1.11 7.12 -51.93 -0.37 0.74 16 40 H 0.06 0.91 4.68 -51.93 -0.24 0.66 16 41 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.07 1.48 6.43 -51.93 -0.33 1.14 16 46 H 0.06 1.22 7.39 -51.93 -0.38 0.83 16 47 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 48 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -30.38 394.70 -10.00 -40.38 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.56 Total: 6.20 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.67 Total: -1.90 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.80 Total: -52.77 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.10 Total: -12.43 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.38 -10.00 -40.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348373.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.987 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds