Wall clock time and date at job start Wed Apr 1 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30838 * 125.90147 * 2 1 4 4 N 1.40085 * 108.20823 * 180.02562 * 3 2 1 5 5 C 1.46502 * 126.03541 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92473 * 359.75285 * 4 3 2 7 7 C 1.35322 * 107.74596 * 0.39592 * 6 4 3 8 8 C 1.50694 * 126.03992 * 179.87039 * 7 6 4 9 9 N 1.46896 * 109.47323 * 264.60804 * 8 7 6 10 10 C 1.48873 * 110.69212 * 280.08810 * 9 8 7 11 11 C 1.54941 * 103.07636 * 200.19058 * 10 9 8 12 12 C 1.54556 * 102.94384 * 37.71084 * 11 10 9 13 13 H 1.09003 * 117.57182 * 117.01721 * 12 11 10 14 14 C 1.52931 * 118.92378 * 274.40845 * 12 11 10 15 15 C 1.47947 * 111.00516 * 163.12151 * 9 8 7 16 16 C 1.50705 * 117.36812 * 5.35711 * 15 9 8 17 17 O 1.21283 * 119.99979 * 240.82668 * 16 15 9 18 18 N 1.34777 * 120.00358 * 60.82397 * 16 15 9 19 19 C 1.47070 * 136.05279 * 5.03520 * 18 16 15 20 20 C 1.53761 * 87.88548 * 152.96124 * 19 18 16 21 21 C 1.50698 * 114.08480 * 139.77534 * 20 19 18 22 22 H 1.08001 * 120.00625 * 266.55657 * 21 20 19 23 23 C 1.37883 * 119.99814 * 86.56999 * 21 20 19 24 24 N 1.31514 * 119.99803 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00041 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47381 * 59.99053 * 25 23 21 27 27 H 1.48500 * 109.47243 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46971 * 299.99179 * 25 23 21 29 29 C 1.47059 * 136.05862 * 185.40100 * 18 16 15 30 30 H 1.08999 * 109.47358 * 275.56969 * 1 2 3 31 31 H 1.08998 * 109.47300 * 35.57260 * 1 2 3 32 32 H 1.09001 * 109.47192 * 155.56519 * 1 2 3 33 33 H 1.08992 * 109.47619 * 89.97302 * 5 4 3 34 34 H 1.09002 * 109.46723 * 209.97646 * 5 4 3 35 35 H 1.08999 * 109.46704 * 329.96926 * 5 4 3 36 36 H 1.07998 * 126.12976 * 180.23772 * 6 4 3 37 37 H 1.08999 * 109.47555 * 144.60754 * 8 7 6 38 38 H 1.09004 * 109.47529 * 24.60512 * 8 7 6 39 39 H 1.08999 * 110.52361 * 81.90401 * 10 9 8 40 40 H 1.08998 * 110.95300 * 318.66937 * 10 9 8 41 41 H 1.09008 * 110.71397 * 279.34844 * 11 10 9 42 42 H 1.09002 * 110.72295 * 156.08242 * 11 10 9 43 43 H 1.09007 * 117.45937 * 343.71570 * 14 12 11 44 44 H 1.08999 * 117.46021 * 198.94793 * 14 12 11 45 45 H 1.08999 * 113.46627 * 267.69170 * 19 18 16 46 46 H 1.08994 * 113.46891 * 38.13293 * 19 18 16 47 47 H 1.09000 * 114.57629 * 272.66666 * 20 19 18 48 48 H 0.97001 * 120.00219 * 180.02562 * 24 23 21 49 49 H 1.08997 * 113.47125 * 321.87294 * 29 18 16 50 50 H 1.09006 * 113.46857 * 92.30876 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 3.6142 -0.7153 0.0046 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5657 -0.0003 9 7 1.5906 -2.9932 -1.3796 10 6 0.2602 -2.5020 -1.8324 11 6 -0.0744 -3.4398 -3.0195 12 6 0.4712 -4.8061 -2.5458 13 1 -0.2457 -5.6159 -2.4099 14 6 1.9449 -5.1372 -2.7849 15 6 1.5241 -4.4682 -1.4743 16 6 1.6089 -5.2495 -0.1883 17 8 2.5150 -6.0370 -0.0159 18 7 0.6780 -5.0729 0.7701 19 6 -0.5747 -4.3139 0.9025 20 6 -1.0368 -5.3648 1.9254 21 6 -1.7686 -4.7893 3.1105 22 1 -1.2278 -4.5460 4.0131 23 6 -3.1288 -4.5737 3.0425 24 7 -3.7873 -4.8697 1.9432 25 14 -4.0360 -3.8611 4.5116 26 1 -3.4767 -2.5248 4.8383 27 1 -5.4785 -3.7271 4.1852 28 1 -3.8741 -4.7644 5.6791 29 6 0.4710 -5.5495 2.1459 30 1 -0.3634 0.0997 1.0228 31 1 -0.3634 0.8359 -0.5978 32 1 -0.3633 -0.9356 -0.4251 33 1 5.0828 1.7155 1.0274 34 1 5.6093 0.9983 -0.5143 35 1 4.5563 2.4334 -0.5139 36 1 4.4891 -1.3486 0.0092 37 1 0.9481 -2.6505 0.5909 38 1 2.6336 -3.2002 0.4322 39 1 0.3286 -1.4670 -2.1671 40 1 -0.4826 -2.6033 -1.0411 41 1 0.4373 -3.1131 -3.9249 42 1 -1.1513 -3.4892 -3.1804 43 1 2.4859 -4.5280 -3.5091 44 1 2.2377 -6.1863 -2.7424 45 1 -0.4375 -3.3214 1.3318 46 1 -1.1726 -4.3006 -0.0086 47 1 -1.5344 -6.2319 1.4912 48 1 -4.7441 -4.7176 1.8952 49 1 0.7640 -6.5888 2.2940 50 1 0.8839 -4.8827 2.9030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278348373.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:23 Heat of formation + Delta-G solvation = 117.135536 kcal Electronic energy + Delta-G solvation = -31894.055802 eV Core-core repulsion = 27925.318541 eV Total energy + Delta-G solvation = -3968.737261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.42652 -41.81036 -40.04524 -38.57679 -35.82693 -34.64801 -34.22205 -32.31123 -31.30230 -30.52228 -30.20424 -27.38682 -27.11353 -26.81861 -24.98300 -24.39722 -23.47294 -21.85389 -21.61382 -21.28320 -20.50594 -19.19492 -18.87144 -18.09807 -17.68107 -17.13924 -16.59490 -16.49420 -16.32134 -16.05132 -15.73950 -15.37034 -15.08578 -14.73991 -14.60248 -14.29482 -14.23959 -14.15628 -14.07413 -13.82028 -13.41606 -13.24882 -13.19521 -13.16622 -12.97286 -12.87596 -12.76359 -12.69099 -12.60281 -12.24947 -12.19328 -11.91121 -11.78585 -11.47233 -11.36879 -11.21284 -11.06525 -10.61382 -10.46951 -10.15815 -9.62100 -9.48398 -9.20957 -8.15396 -6.26268 0.90629 1.33449 1.48925 1.50334 1.56916 1.65333 1.69455 1.87322 2.46649 2.56273 2.94758 3.14380 3.37542 3.52098 3.64216 3.73833 3.88732 3.92150 4.15607 4.21484 4.23621 4.27654 4.31987 4.37925 4.40724 4.43676 4.46416 4.50056 4.58531 4.61685 4.67764 4.68639 4.74672 4.79097 4.83043 4.86434 4.91026 4.99516 5.03393 5.05545 5.07117 5.12225 5.15444 5.27605 5.58695 5.69913 5.77519 5.81422 5.90221 6.13632 6.23038 6.74393 6.80886 6.82635 7.09148 7.43574 8.94027 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.004315 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.792833 B = 6487.332114 C = 8038.252601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.078 3.922 3 N -0.330 5.330 4 N -0.379 5.379 5 C 0.096 3.904 6 C 0.075 3.925 7 C -0.241 4.241 8 C 0.124 3.876 9 N -0.452 5.452 10 C 0.027 3.973 11 C -0.085 4.085 12 C -0.149 4.149 13 H 0.108 0.892 14 C -0.086 4.086 15 C -0.033 4.033 16 C 0.561 3.439 17 O -0.590 6.590 18 N -0.635 5.635 19 C 0.121 3.879 20 C 0.029 3.971 21 C -0.530 4.530 22 H 0.064 0.936 23 C 0.029 3.971 24 N -0.913 5.913 25 Si 0.951 3.049 26 H -0.268 1.268 27 H -0.286 1.286 28 H -0.274 1.274 29 C 0.102 3.898 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.195 0.805 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.039 0.961 48 H 0.265 0.735 49 H 0.056 0.944 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.309 10.495 -9.429 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 N -0.154 5.154 4 N -0.160 5.160 5 C -0.044 4.044 6 C -0.073 4.073 7 C -0.252 4.252 8 C -0.004 4.004 9 N -0.176 5.176 10 C -0.099 4.099 11 C -0.122 4.122 12 C -0.168 4.168 13 H 0.126 0.874 14 C -0.124 4.124 15 C -0.126 4.126 16 C 0.351 3.649 17 O -0.470 6.470 18 N -0.368 5.368 19 C -0.001 4.001 20 C 0.009 3.991 21 C -0.568 4.568 22 H 0.082 0.918 23 C -0.172 4.172 24 N -0.551 5.551 25 Si 0.777 3.223 26 H -0.193 1.193 27 H -0.211 1.211 28 H -0.199 1.199 29 C -0.020 4.020 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.211 0.789 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.142 0.858 44 H 0.120 0.880 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.379 11.675 -9.878 19.676 hybrid contribution -1.092 -1.131 1.647 2.277 sum 11.287 10.545 -8.231 17.502 Atomic orbital electron populations 1.20526 0.86160 1.04368 1.03535 1.22425 0.97456 0.90166 0.98720 1.77199 0.87662 1.23237 1.27260 1.48668 1.05746 1.05085 1.56509 1.22177 0.82825 0.94926 1.04477 1.22632 0.99495 0.85168 1.00024 1.19734 0.92796 0.94741 1.17975 1.20459 0.99742 0.91218 0.89023 1.64943 1.29187 1.02002 1.21474 1.23968 0.88531 1.00449 0.96974 1.22158 1.02002 0.90026 0.98029 1.23898 0.92174 1.00602 1.00174 0.87429 1.23161 0.94828 1.00870 0.93506 1.22741 1.11545 0.89623 0.88729 1.19701 0.79322 0.81755 0.84137 1.90605 1.35836 1.39457 1.81143 1.50012 1.23927 1.48375 1.14502 1.23424 0.80398 0.97039 0.99215 1.20223 0.89603 0.94606 0.94644 1.21132 0.93198 1.42857 0.99603 0.91770 1.25648 0.98217 0.95205 0.98109 1.70033 1.09014 1.47880 1.28133 0.85714 0.77405 0.79251 0.79935 1.19342 1.21145 1.19899 1.23263 0.97453 0.98866 0.82401 0.90629 0.89742 0.89660 0.89787 0.86860 0.88924 0.78854 0.93058 0.92940 0.88342 0.93320 0.88591 0.88880 0.85765 0.87990 0.90399 0.92381 0.94257 0.92596 0.92592 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.21 9.75 71.23 0.69 -1.52 16 2 C 0.08 2.25 7.01 43.10 0.30 2.55 16 3 N -0.33 -9.56 12.58 -47.39 -0.60 -10.16 16 4 N -0.38 -8.82 4.01 -369.57 -1.48 -10.30 16 5 C 0.10 1.21 11.47 127.77 1.47 2.67 16 6 C 0.07 1.81 11.40 83.54 0.95 2.77 16 7 C -0.24 -6.90 5.46 -20.14 -0.11 -7.01 16 8 C 0.12 3.87 3.90 85.56 0.33 4.20 16 9 N -0.45 -13.01 5.18 -841.68 -4.36 -17.37 16 10 C 0.03 0.69 4.57 86.58 0.40 1.09 16 11 C -0.08 -1.85 6.87 31.79 0.22 -1.63 16 12 C -0.15 -3.95 6.89 -9.95 -0.07 -4.02 16 13 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 14 C -0.09 -2.22 9.92 30.59 0.30 -1.92 16 15 C -0.03 -1.05 2.65 2.93 0.01 -1.04 16 16 C 0.56 22.18 5.76 87.66 0.50 22.68 16 17 O -0.59 -26.90 17.72 -3.04 -0.05 -26.96 16 18 N -0.64 -25.37 3.03 -857.74 -2.60 -27.97 16 19 C 0.12 4.92 5.73 83.27 0.48 5.40 16 20 C 0.03 1.32 3.80 -11.12 -0.04 1.28 16 21 C -0.53 -26.32 8.82 25.60 0.23 -26.09 16 22 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 23 C 0.03 1.47 5.46 84.66 0.46 1.94 16 24 N -0.91 -48.43 13.26 21.45 0.28 -48.14 16 25 Si 0.95 40.08 29.54 68.60 2.03 42.10 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 29 C 0.10 4.25 8.18 83.18 0.68 4.93 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.13 3.95 -2.39 -0.01 2.12 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.05 1.75 3.95 -2.39 -0.01 1.74 16 38 H 0.05 1.83 6.96 -2.38 -0.02 1.82 16 39 H 0.10 2.31 7.12 -2.39 -0.02 2.29 16 40 H 0.05 1.38 4.68 -2.39 -0.01 1.37 16 41 H 0.10 1.76 8.14 -2.38 -0.02 1.75 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 44 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.08 3.14 6.43 -2.39 -0.02 3.12 16 46 H 0.06 2.37 7.39 -2.39 -0.02 2.36 16 47 H 0.04 2.04 8.11 -2.39 -0.02 2.02 16 48 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 49 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.08 3.28 8.10 -2.38 -0.02 3.26 16 Total: -1.00 -65.50 394.70 0.98 -64.52 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.96 Total: 27.98 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.80 Total: 6.29 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -8.75 Total: -113.94 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.96 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.10 kcal Total: -65.50 0.98 -64.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348373.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.656 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds