Wall clock time and date at job start Wed Apr 1 2020 03:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35449 * 125.68813 * 2 1 4 4 N 1.36436 * 107.22206 * 179.97438 * 3 2 1 5 5 C 1.36721 * 132.26818 * 179.97438 * 4 3 2 6 6 C 1.34546 * 120.95233 * 179.97438 * 5 4 3 7 7 C 1.41772 * 120.14903 * 0.04361 * 6 5 4 8 8 C 1.47656 * 120.37350 * 179.97438 * 7 6 5 9 9 O 1.21578 * 120.00437 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99746 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47235 * 35.00222 * 11 10 8 13 13 C 1.52995 * 109.47653 * 155.00271 * 11 10 8 14 14 N 1.46507 * 109.46990 * 305.00397 * 13 11 10 15 15 C 1.36943 * 120.00041 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99741 * 359.97438 * 15 14 13 17 17 C 1.38804 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99965 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47116 * 89.99973 * 19 17 15 21 21 H 1.48497 * 109.46919 * 209.99995 * 19 17 15 22 22 H 1.48495 * 109.46931 * 329.99959 * 19 17 15 23 23 C 1.52999 * 109.47095 * 275.00453 * 11 10 8 24 24 C 1.52998 * 109.47443 * 59.99752 * 23 11 10 25 25 C 1.53010 * 109.47304 * 179.97438 * 23 11 10 26 26 C 1.53005 * 109.47202 * 299.99532 * 23 11 10 27 27 C 1.38434 * 119.25622 * 359.97438 * 7 6 5 28 28 C 1.37189 * 106.96911 * 359.97438 * 4 3 2 29 29 N 1.32650 * 108.06268 * 359.73613 * 28 4 3 30 30 H 1.09002 * 109.47152 * 90.00276 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.00376 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.00357 * 1 2 3 33 33 H 1.08003 * 126.39018 * 359.95563 * 3 2 1 34 34 H 1.08000 * 119.52357 * 0.02562 * 5 4 3 35 35 H 1.07996 * 119.92145 * 180.02562 * 6 5 4 36 36 H 0.97003 * 120.00094 * 0.02562 * 10 8 7 37 37 H 1.09006 * 109.47175 * 64.99844 * 13 11 10 38 38 H 1.08999 * 109.47844 * 185.00091 * 13 11 10 39 39 H 0.97001 * 119.99695 * 359.97438 * 14 13 11 40 40 H 0.96997 * 120.00362 * 180.02562 * 18 17 15 41 41 H 1.09010 * 109.46710 * 59.99805 * 24 23 11 42 42 H 1.09001 * 109.47607 * 179.97438 * 24 23 11 43 43 H 1.08997 * 109.47255 * 300.00243 * 24 23 11 44 44 H 1.09007 * 109.46645 * 60.00069 * 25 23 11 45 45 H 1.08997 * 109.47212 * 179.97438 * 25 23 11 46 46 H 1.09002 * 109.46848 * 300.00492 * 25 23 11 47 47 H 1.08997 * 109.46637 * 60.00282 * 26 23 11 48 48 H 1.09001 * 109.46988 * 179.97438 * 26 23 11 49 49 H 1.08996 * 109.47048 * 300.00116 * 26 23 11 50 50 H 1.08007 * 120.45688 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5913 0.6680 0.0006 5 6 4.7840 1.3363 0.0004 6 6 5.9518 0.6681 0.0016 7 6 5.9608 -0.7496 0.0022 8 6 7.2395 -1.4881 0.0030 9 8 7.2395 -2.7038 0.0030 10 7 8.4067 -0.8143 0.0037 11 6 9.6754 -1.5468 0.0039 12 1 9.5694 -2.4573 -0.5860 13 6 10.7711 -0.6695 -0.6049 14 7 10.3550 -0.2223 -1.9366 15 6 11.1802 0.5805 -2.6782 16 1 12.1376 0.8842 -2.2812 17 6 10.7861 1.0037 -3.9400 18 7 9.6191 0.6340 -4.4235 19 14 11.9115 2.0993 -4.9513 20 1 12.8047 1.2558 -5.7854 21 1 11.0929 2.9729 -5.8300 22 1 12.7313 2.9401 -4.0424 23 6 10.0536 -1.9113 1.4409 24 6 8.9580 -2.7886 2.0498 25 6 11.3784 -2.6769 1.4411 26 6 10.2026 -0.6333 2.2689 27 6 4.7574 -1.4339 0.0021 28 6 3.5555 -0.7035 0.0015 29 7 2.2840 -1.0817 0.0073 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3633 -0.8900 0.5139 33 1 1.9649 2.1277 -0.0007 34 1 4.7889 2.4163 0.0001 35 1 6.8842 1.2129 0.0019 36 1 8.4068 0.1558 0.0040 37 1 10.9388 0.1978 0.0337 38 1 11.6935 -1.2444 -0.6865 39 1 9.4949 -0.4948 -2.2929 40 1 9.3439 0.9295 -5.3055 41 1 8.8520 -3.6991 1.4598 42 1 9.2276 -3.0487 3.0734 43 1 8.0141 -2.2436 2.0496 44 1 12.1591 -2.0521 1.0072 45 1 11.6480 -2.9362 2.4649 46 1 11.2719 -3.5874 0.8513 47 1 9.2586 -0.0883 2.2687 48 1 10.4716 -0.8930 3.2928 49 1 10.9831 -0.0083 1.8351 50 1 4.7417 -2.5139 0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279002872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:55 Heat of formation + Delta-G solvation = 58.590001 kcal Electronic energy + Delta-G solvation = -30615.528425 eV Core-core repulsion = 26644.252439 eV Total energy + Delta-G solvation = -3971.275986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.96015 -40.22895 -37.94631 -36.89460 -34.48085 -33.74507 -33.30941 -31.88215 -31.05960 -29.38310 -28.19544 -27.51023 -27.15663 -26.53732 -24.29529 -23.44737 -23.17899 -21.59013 -21.03496 -20.30634 -18.63904 -18.01136 -17.77398 -17.08799 -16.37658 -16.15623 -15.75270 -15.51444 -14.92146 -14.71723 -14.61282 -14.01908 -13.91630 -13.83593 -13.54985 -13.38220 -13.35418 -13.22961 -13.12085 -12.73466 -12.50949 -12.20390 -11.98875 -11.93268 -11.82675 -11.57289 -11.39496 -11.25859 -11.17806 -10.95232 -10.85899 -10.76166 -10.52615 -10.26745 -10.25995 -9.97219 -9.78990 -9.76216 -8.94475 -8.85587 -8.66294 -7.97279 -6.99800 -5.82501 -3.12512 0.41262 0.95209 2.41952 2.55448 2.93705 3.25890 3.38655 3.44025 3.45565 3.67686 4.05396 4.25770 4.47688 4.51770 4.67078 4.87655 4.91968 4.99925 5.02253 5.06147 5.12998 5.24526 5.43430 5.47564 5.49404 5.55125 5.56140 5.69223 5.73897 5.76407 5.85307 5.87893 5.89632 5.95106 6.01951 6.05877 6.10729 6.14806 6.25168 6.28602 6.42956 6.44109 6.45166 6.46847 6.61691 6.69720 6.86747 6.90901 7.63505 7.70188 7.76045 8.34986 8.41864 9.47014 10.02914 10.38105 11.39475 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.003378 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.372785 B = 8287.218278 C =10689.607497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.056 3.944 3 C -0.095 4.095 4 N -0.351 5.351 5 C 0.048 3.952 6 C -0.110 4.110 7 C -0.114 4.114 8 C 0.564 3.436 9 O -0.533 6.533 10 N -0.699 5.699 11 C 0.149 3.851 12 H 0.089 0.911 13 C 0.141 3.859 14 N -0.732 5.732 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.076 4.076 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.007 4.007 28 C 0.214 3.786 29 N -0.481 5.481 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.402 0.598 37 H 0.029 0.971 38 H 0.037 0.963 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.062 0.938 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 1.529 14.689 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C -0.227 4.227 4 N -0.023 5.023 5 C -0.073 4.073 6 C -0.131 4.131 7 C -0.123 4.123 8 C 0.351 3.649 9 O -0.411 6.411 10 N -0.349 5.349 11 C 0.045 3.955 12 H 0.107 0.893 13 C 0.013 3.987 14 N -0.377 5.377 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.078 4.078 24 C -0.188 4.188 25 C -0.199 4.199 26 C -0.199 4.199 27 C -0.028 4.028 28 C -0.028 4.028 29 N -0.202 5.202 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.200 0.800 34 H 0.186 0.814 35 H 0.174 0.826 36 H 0.238 0.762 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.198 0.025 14.634 18.427 hybrid contribution 0.678 2.042 -0.930 2.344 sum -10.520 2.067 13.704 17.400 Atomic orbital electron populations 1.20137 0.86790 1.03126 1.02829 1.20972 0.96925 0.87926 1.02090 1.22485 0.80811 1.01168 1.18284 1.42785 1.06177 1.08839 1.44458 1.21442 0.82609 0.98806 1.04472 1.20904 0.97895 0.93465 1.00813 1.20025 0.93995 0.93310 1.04947 1.17724 0.83291 0.87120 0.76815 1.90787 1.87368 1.13010 1.49909 1.45799 1.05149 1.10528 1.73415 1.21331 0.82708 0.96468 0.95039 0.89282 1.21108 0.94300 0.95249 0.88003 1.42373 1.21626 1.59881 1.13780 1.19190 0.98982 1.22115 0.97057 0.91176 1.24740 0.97160 1.01171 0.97660 1.69665 1.20318 1.49465 1.18335 0.86215 0.79707 0.80137 0.80242 1.21706 1.21824 1.20783 1.20902 0.96016 0.95844 0.95001 1.21898 0.97665 0.99980 0.99247 1.21890 0.96294 1.00258 1.01420 1.21919 1.01825 0.97081 0.99092 1.20658 0.86479 1.01233 0.94481 1.20733 0.94247 0.80349 1.07462 1.70572 0.98066 1.29435 1.22094 0.90712 0.90851 0.90667 0.79990 0.81432 0.82578 0.76178 0.95341 0.94580 0.78040 0.93490 0.91884 0.93939 0.92964 0.91888 0.92866 0.92496 0.92947 0.93149 0.91866 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.42 36.01 0.38 -0.19 16 2 C 0.06 0.67 7.06 -83.00 -0.59 0.08 16 3 C -0.09 -1.02 11.64 -16.50 -0.19 -1.21 16 4 N -0.35 -4.37 2.94 -62.75 -0.18 -4.55 16 5 C 0.05 0.50 10.91 -16.68 -0.18 0.32 16 6 C -0.11 -1.27 9.48 -39.54 -0.37 -1.64 16 7 C -0.11 -1.59 5.90 -104.63 -0.62 -2.21 16 8 C 0.56 8.90 6.13 -12.42 -0.08 8.82 16 9 O -0.53 -9.69 13.48 5.30 0.07 -9.62 16 10 N -0.70 -10.44 3.60 -54.81 -0.20 -10.64 16 11 C 0.15 2.36 1.69 -67.93 -0.11 2.25 16 12 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 13 C 0.14 2.58 5.10 -4.04 -0.02 2.55 16 14 N -0.73 -17.27 5.43 -59.91 -0.33 -17.60 16 15 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 19 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.08 -1.00 0.62 -154.50 -0.10 -1.09 16 24 C -0.13 -1.77 6.99 37.16 0.26 -1.51 16 25 C -0.14 -1.72 8.12 37.16 0.30 -1.42 16 26 C -0.14 -1.66 7.97 37.16 0.30 -1.36 16 27 C -0.01 -0.10 9.70 -38.60 -0.37 -0.48 16 28 C 0.21 3.14 7.79 -155.97 -1.22 1.92 16 29 N -0.48 -7.24 11.31 -9.02 -0.10 -7.34 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.16 1.53 6.46 -52.49 -0.34 1.19 16 36 H 0.40 5.58 6.67 -40.82 -0.27 5.31 16 37 H 0.03 0.50 6.17 -51.93 -0.32 0.18 16 38 H 0.04 0.68 6.71 -51.93 -0.35 0.33 16 39 H 0.39 9.81 7.33 -40.82 -0.30 9.52 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.06 0.95 7.53 -51.92 -0.39 0.56 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.75 5.77 -51.93 -0.30 0.45 16 44 H 0.06 0.78 6.55 -51.93 -0.34 0.44 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.60 7.60 -51.93 -0.39 0.20 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.76 6.32 -51.93 -0.33 0.43 16 50 H 0.16 2.36 7.67 -52.48 -0.40 1.96 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -33.16 397.31 -9.39 -42.55 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -7.48 Total: 13.21 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.86 Total: -2.14 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -0.08 Total: -66.69 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.16 -9.39 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279002872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.141 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds