Wall clock time and date at job start Wed Apr 1 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35449 * 125.68813 * 2 1 4 4 N 1.36436 * 107.22206 * 179.97438 * 3 2 1 5 5 C 1.36721 * 132.26818 * 179.97438 * 4 3 2 6 6 C 1.34546 * 120.95233 * 179.97438 * 5 4 3 7 7 C 1.41772 * 120.14903 * 0.04361 * 6 5 4 8 8 C 1.47656 * 120.37350 * 179.97438 * 7 6 5 9 9 O 1.21578 * 120.00437 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99746 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47235 * 35.00222 * 11 10 8 13 13 C 1.52995 * 109.47653 * 155.00271 * 11 10 8 14 14 N 1.46507 * 109.46990 * 305.00397 * 13 11 10 15 15 C 1.36943 * 120.00041 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99741 * 359.97438 * 15 14 13 17 17 C 1.38804 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99965 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47116 * 89.99973 * 19 17 15 21 21 H 1.48497 * 109.46919 * 209.99995 * 19 17 15 22 22 H 1.48495 * 109.46931 * 329.99959 * 19 17 15 23 23 C 1.52999 * 109.47095 * 275.00453 * 11 10 8 24 24 C 1.52998 * 109.47443 * 59.99752 * 23 11 10 25 25 C 1.53010 * 109.47304 * 179.97438 * 23 11 10 26 26 C 1.53005 * 109.47202 * 299.99532 * 23 11 10 27 27 C 1.38434 * 119.25622 * 359.97438 * 7 6 5 28 28 C 1.37189 * 106.96911 * 359.97438 * 4 3 2 29 29 N 1.32650 * 108.06268 * 359.73613 * 28 4 3 30 30 H 1.09002 * 109.47152 * 90.00276 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.00376 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.00357 * 1 2 3 33 33 H 1.08003 * 126.39018 * 359.95563 * 3 2 1 34 34 H 1.08000 * 119.52357 * 0.02562 * 5 4 3 35 35 H 1.07996 * 119.92145 * 180.02562 * 6 5 4 36 36 H 0.97003 * 120.00094 * 0.02562 * 10 8 7 37 37 H 1.09006 * 109.47175 * 64.99844 * 13 11 10 38 38 H 1.08999 * 109.47844 * 185.00091 * 13 11 10 39 39 H 0.97001 * 119.99695 * 359.97438 * 14 13 11 40 40 H 0.96997 * 120.00362 * 180.02562 * 18 17 15 41 41 H 1.09010 * 109.46710 * 59.99805 * 24 23 11 42 42 H 1.09001 * 109.47607 * 179.97438 * 24 23 11 43 43 H 1.08997 * 109.47255 * 300.00243 * 24 23 11 44 44 H 1.09007 * 109.46645 * 60.00069 * 25 23 11 45 45 H 1.08997 * 109.47212 * 179.97438 * 25 23 11 46 46 H 1.09002 * 109.46848 * 300.00492 * 25 23 11 47 47 H 1.08997 * 109.46637 * 60.00282 * 26 23 11 48 48 H 1.09001 * 109.46988 * 179.97438 * 26 23 11 49 49 H 1.08996 * 109.47048 * 300.00116 * 26 23 11 50 50 H 1.08007 * 120.45688 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5913 0.6680 0.0006 5 6 4.7840 1.3363 0.0004 6 6 5.9518 0.6681 0.0016 7 6 5.9608 -0.7496 0.0022 8 6 7.2395 -1.4881 0.0030 9 8 7.2395 -2.7038 0.0030 10 7 8.4067 -0.8143 0.0037 11 6 9.6754 -1.5468 0.0039 12 1 9.5694 -2.4573 -0.5860 13 6 10.7711 -0.6695 -0.6049 14 7 10.3550 -0.2223 -1.9366 15 6 11.1802 0.5805 -2.6782 16 1 12.1376 0.8842 -2.2812 17 6 10.7861 1.0037 -3.9400 18 7 9.6191 0.6340 -4.4235 19 14 11.9115 2.0993 -4.9513 20 1 12.8047 1.2558 -5.7854 21 1 11.0929 2.9729 -5.8300 22 1 12.7313 2.9401 -4.0424 23 6 10.0536 -1.9113 1.4409 24 6 8.9580 -2.7886 2.0498 25 6 11.3784 -2.6769 1.4411 26 6 10.2026 -0.6333 2.2689 27 6 4.7574 -1.4339 0.0021 28 6 3.5555 -0.7035 0.0015 29 7 2.2840 -1.0817 0.0073 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3633 -0.8900 0.5139 33 1 1.9649 2.1277 -0.0007 34 1 4.7889 2.4163 0.0001 35 1 6.8842 1.2129 0.0019 36 1 8.4068 0.1558 0.0040 37 1 10.9388 0.1978 0.0337 38 1 11.6935 -1.2444 -0.6865 39 1 9.4949 -0.4948 -2.2929 40 1 9.3439 0.9295 -5.3055 41 1 8.8520 -3.6991 1.4598 42 1 9.2276 -3.0487 3.0734 43 1 8.0141 -2.2436 2.0496 44 1 12.1591 -2.0521 1.0072 45 1 11.6480 -2.9362 2.4649 46 1 11.2719 -3.5874 0.8513 47 1 9.2586 -0.0883 2.2687 48 1 10.4716 -0.8930 3.2928 49 1 10.9831 -0.0083 1.8351 50 1 4.7417 -2.5139 0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279002872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:54 Heat of formation + Delta-G solvation = 38.906302 kcal Electronic energy + Delta-G solvation = -30616.381974 eV Core-core repulsion = 26644.252439 eV Total energy + Delta-G solvation = -3972.129536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.89138 -41.47357 -39.07497 -37.98925 -36.17723 -34.87674 -34.53804 -33.06174 -32.57482 -30.33202 -29.55919 -28.57504 -28.12859 -27.64513 -25.82210 -24.79510 -24.12357 -23.06980 -22.06372 -21.39032 -19.87080 -19.27364 -18.91671 -18.56594 -17.53807 -17.13991 -16.90486 -16.86963 -16.44182 -15.80442 -15.64680 -15.44258 -15.30851 -14.97567 -14.82420 -14.62830 -14.28215 -14.20017 -14.09066 -14.02834 -13.64615 -13.21457 -13.06971 -13.01927 -12.92198 -12.84523 -12.73732 -12.53040 -12.45192 -12.36622 -12.18735 -12.02610 -12.00062 -11.74025 -11.61748 -11.28141 -11.22543 -11.07343 -10.88105 -9.95152 -9.75667 -8.96667 -8.90609 -7.91565 -5.20714 -0.62097 0.02609 1.49454 1.51051 1.54256 1.58871 1.60918 1.88102 2.06196 2.57255 2.58247 3.12181 3.38481 3.42980 3.54986 3.66964 3.71238 3.85764 3.94563 4.05276 4.23142 4.26890 4.29720 4.33126 4.36937 4.47337 4.61178 4.66013 4.83494 4.84112 4.86035 4.86574 4.90034 4.92717 4.97301 4.98676 5.08671 5.09675 5.10759 5.18018 5.26126 5.32008 5.34002 5.44072 5.53393 5.57092 5.62636 5.64247 5.99546 6.28601 6.52631 6.78013 7.18057 7.36425 8.10282 8.33792 9.31096 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.003378 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.372785 B = 8287.218278 C =10689.607497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.034 3.966 3 C -0.080 4.080 4 N -0.356 5.356 5 C 0.062 3.938 6 C -0.123 4.123 7 C -0.119 4.119 8 C 0.562 3.438 9 O -0.566 6.566 10 N -0.691 5.691 11 C 0.158 3.842 12 H 0.056 0.944 13 C 0.144 3.856 14 N -0.743 5.743 15 C -0.238 4.238 16 H 0.080 0.920 17 C -0.072 4.072 18 N -0.967 5.967 19 Si 0.969 3.031 20 H -0.294 1.294 21 H -0.299 1.299 22 H -0.266 1.266 23 C -0.070 4.070 24 C -0.123 4.123 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.025 4.025 28 C 0.184 3.816 29 N -0.518 5.518 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.228 0.772 34 H 0.214 0.786 35 H 0.174 0.826 36 H 0.409 0.591 37 H 0.049 0.951 38 H 0.038 0.962 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.046 0.954 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 4.486 16.249 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 C -0.212 4.212 4 N -0.027 5.027 5 C -0.058 4.058 6 C -0.143 4.143 7 C -0.128 4.128 8 C 0.350 3.650 9 O -0.446 6.446 10 N -0.342 5.342 11 C 0.053 3.947 12 H 0.074 0.926 13 C 0.018 3.982 14 N -0.386 5.386 15 C -0.370 4.370 16 H 0.098 0.902 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.799 3.201 20 H -0.222 1.222 21 H -0.225 1.225 22 H -0.190 1.190 23 C -0.071 4.071 24 C -0.180 4.180 25 C -0.197 4.197 26 C -0.195 4.195 27 C -0.046 4.046 28 C -0.057 4.057 29 N -0.240 5.240 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.244 0.756 34 H 0.230 0.770 35 H 0.192 0.808 36 H 0.246 0.754 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.940 2.993 16.242 19.810 hybrid contribution 0.547 1.087 -1.359 1.824 sum -10.393 4.080 14.883 18.606 Atomic orbital electron populations 1.20264 0.84291 1.04330 1.03670 1.21742 0.98693 0.87638 1.01907 1.23266 0.79684 1.02737 1.15506 1.43040 1.07440 1.08113 1.44109 1.22114 0.81431 1.00574 1.01718 1.21081 0.99398 0.92136 1.01695 1.19933 0.92597 0.94622 1.05648 1.18028 0.84056 0.86855 0.76088 1.90766 1.87861 1.14509 1.51459 1.45697 1.04694 1.10755 1.73013 1.21158 0.82486 0.94647 0.96439 0.92561 1.21240 0.94916 0.96091 0.85948 1.42553 1.20873 1.59628 1.15503 1.19601 0.99222 1.21040 0.97112 0.90244 1.25490 0.98583 1.03294 0.99095 1.69829 1.22236 1.51388 1.18367 0.85206 0.77855 0.78397 0.78668 1.22186 1.22542 1.19015 1.20855 0.96276 0.96895 0.93086 1.21798 0.97341 0.98884 0.99987 1.21890 0.95544 0.99663 1.02650 1.21887 1.02032 0.95877 0.99705 1.20545 0.87292 1.00759 0.96049 1.20685 0.94042 0.81745 1.09201 1.70530 0.98828 1.31516 1.23118 0.89942 0.87795 0.91329 0.75573 0.76957 0.80833 0.75366 0.93319 0.94421 0.79490 0.94292 0.94134 0.91885 0.94129 0.91864 0.90697 0.93506 0.92697 0.91290 0.91798 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.42 71.24 0.74 -0.22 16 2 C 0.03 0.77 7.06 41.71 0.29 1.07 16 3 C -0.08 -1.48 11.64 83.33 0.97 -0.51 16 4 N -0.36 -8.27 2.94 -352.43 -1.04 -9.31 16 5 C 0.06 1.15 10.91 83.09 0.91 2.06 16 6 C -0.12 -2.71 9.48 22.30 0.21 -2.49 16 7 C -0.12 -3.46 5.90 -19.87 -0.12 -3.58 16 8 C 0.56 18.64 6.13 86.73 0.53 19.17 16 9 O -0.57 -22.15 13.48 -3.96 -0.05 -22.20 16 10 N -0.69 -20.98 3.60 -445.60 -1.60 -22.59 16 11 C 0.16 5.05 1.69 44.99 0.08 5.13 16 12 H 0.06 2.19 7.58 -2.38 -0.02 2.17 16 13 C 0.14 5.17 5.10 86.38 0.44 5.61 16 14 N -0.74 -35.05 5.43 -343.44 -1.87 -36.92 16 15 C -0.24 -12.45 9.99 84.03 0.84 -11.61 16 16 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 18 N -0.97 -57.60 13.06 21.65 0.28 -57.31 16 19 Si 0.97 44.49 29.55 68.60 2.03 46.52 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 C -0.07 -1.76 0.62 -52.18 -0.03 -1.80 16 24 C -0.12 -3.32 6.99 71.98 0.50 -2.82 16 25 C -0.14 -3.23 8.12 71.99 0.58 -2.64 16 26 C -0.14 -2.89 7.97 71.98 0.57 -2.31 16 27 C -0.02 -0.78 9.70 22.91 0.22 -0.56 16 28 C 0.18 5.55 7.79 133.97 1.04 6.60 16 29 N -0.52 -15.99 11.31 -182.46 -2.06 -18.06 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.23 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.17 3.10 6.46 -2.91 -0.02 3.08 16 36 H 0.41 11.17 6.67 -92.71 -0.62 10.55 16 37 H 0.05 1.60 6.17 -2.38 -0.01 1.58 16 38 H 0.04 1.37 6.71 -2.39 -0.02 1.36 16 39 H 0.37 19.40 7.33 -92.71 -0.68 18.72 16 40 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.04 1.26 7.53 -2.38 -0.02 1.25 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 43 H 0.04 1.18 5.77 -2.39 -0.01 1.17 16 44 H 0.06 1.45 6.55 -2.38 -0.02 1.44 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.13 7.60 -2.39 -0.02 1.11 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.06 1.34 6.32 -2.39 -0.02 1.32 16 50 H 0.15 4.85 7.67 -2.91 -0.02 4.83 16 Total: -1.00 -74.59 397.31 3.62 -70.97 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: -0.32 Total: 41.33 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 8.26 Total: 7.58 kcal Atomic # 7 Polarization: -137.90 SS G_CDS: -6.29 Total: -144.18 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.59 3.62 -70.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279002872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.872 kcal (2) G-P(sol) polarization free energy of solvation -74.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds