Wall clock time and date at job start Wed Apr 1 2020 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.90117 * 2 1 4 4 N 1.40086 * 108.20944 * 180.26098 * 3 2 1 5 5 C 1.46495 * 126.04225 * 179.73996 * 4 3 2 6 6 C 1.50690 * 109.47400 * 269.98131 * 5 4 3 7 7 H 1.08004 * 120.00399 * 359.97438 * 6 5 4 8 8 C 1.37885 * 120.00252 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99472 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00135 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47283 * 59.99789 * 10 8 6 12 12 H 1.48497 * 109.47073 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46942 * 299.99843 * 10 8 6 14 14 C 1.34954 * 107.91886 * 359.72236 * 4 3 2 15 15 C 1.50705 * 126.12030 * 179.97438 * 14 4 3 16 16 C 1.35309 * 107.74977 * 359.97438 * 14 4 3 17 17 C 1.50700 * 126.04114 * 180.02562 * 16 14 4 18 18 C 1.52992 * 109.47257 * 89.99766 * 17 16 14 19 19 C 1.50700 * 109.47257 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00113 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.46494 * 119.99635 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47001 * 180.02562 * 22 21 19 24 24 C 1.47199 * 112.85075 * 48.79882 * 23 22 21 25 25 N 8.07926 * 72.52397 * 133.78391 * 2 1 3 26 26 C 1.53783 * 113.61125 * 277.49729 * 23 22 21 27 27 C 1.53784 * 87.08121 * 220.01870 * 26 23 22 28 28 C 1.53776 * 87.08183 * 25.43342 * 27 26 23 29 29 H 1.09004 * 109.46949 * 270.20411 * 1 2 3 30 30 H 1.08999 * 109.47109 * 30.20727 * 1 2 3 31 31 H 1.08995 * 109.47299 * 150.20687 * 1 2 3 32 32 H 1.09006 * 109.46532 * 29.98030 * 5 4 3 33 33 H 1.09003 * 109.47125 * 149.97640 * 5 4 3 34 34 H 0.97000 * 119.99820 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47455 * 270.02547 * 15 14 4 36 36 H 1.09000 * 109.47357 * 30.03371 * 15 14 4 37 37 H 1.09007 * 109.46282 * 150.02955 * 15 14 4 38 38 H 1.09004 * 109.46932 * 329.99545 * 17 16 14 39 39 H 1.09005 * 109.47238 * 209.99923 * 17 16 14 40 40 H 1.09004 * 109.47330 * 60.00023 * 18 17 16 41 41 H 1.08997 * 109.47279 * 300.00509 * 18 17 16 42 42 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 43 43 H 1.09005 * 109.47306 * 299.99972 * 22 21 19 44 44 H 1.09002 * 109.47518 * 60.00210 * 22 21 19 45 45 H 1.09004 * 113.61679 * 334.56752 * 26 23 22 46 46 H 1.09000 * 113.61479 * 105.46878 * 26 23 22 47 47 H 1.09000 * 113.61340 * 270.88102 * 27 26 23 48 48 H 1.09002 * 113.61350 * 139.98227 * 27 26 23 49 49 H 1.09005 * 113.61547 * 220.02267 * 28 27 26 50 50 H 1.08994 * 113.61857 * 89.11325 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0135 6 6 5.1880 1.7951 -1.4367 7 1 4.6185 1.3781 -2.2541 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1052 -0.7002 10 14 6.7734 2.9614 -3.4598 11 1 5.6535 3.6439 -4.1565 12 1 7.9706 3.8399 -3.4672 13 1 7.0891 1.6894 -4.1582 14 6 3.6142 -0.7154 -0.0035 15 6 4.8350 -1.5990 -0.0086 16 6 2.3272 -1.1330 0.0046 17 6 1.8599 -2.5658 0.0105 18 6 1.7097 -3.0472 1.4549 19 6 1.2418 -4.4798 1.4609 20 8 1.0481 -5.0588 0.4130 21 7 1.0387 -5.1175 2.6308 22 6 0.5845 -6.5102 2.6365 23 6 0.4329 -6.9913 4.0810 24 6 -0.3314 -6.0529 4.9188 25 7 -0.9193 -5.3323 5.5636 26 6 1.7541 -7.4532 4.7182 27 6 0.9527 -8.5974 5.3614 28 6 -0.0421 -8.4492 4.1982 29 1 -0.3633 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5106 32 1 4.5588 2.4342 0.4997 33 1 5.6118 0.9990 0.4974 34 1 7.7408 3.6690 -0.8822 35 1 5.1239 -1.8136 -1.0374 36 1 5.6539 -1.0903 0.5002 37 1 4.6102 -2.5322 0.5079 38 1 2.5905 -3.1884 -0.5059 39 1 0.8983 -2.6365 -0.4979 40 1 0.9791 -2.4246 1.9714 41 1 2.6712 -2.9765 1.9633 42 1 1.1975 -4.6557 3.4689 43 1 -0.3769 -6.5810 2.1276 44 1 1.3153 -7.1330 2.1206 45 1 2.4937 -7.7922 3.9928 46 1 2.1614 -6.7457 5.4403 47 1 0.5298 -8.3418 6.3329 48 1 1.4803 -9.5512 5.3660 49 1 -1.0850 -8.5457 4.5005 50 1 0.2063 -9.0604 3.3306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362574300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:53 Heat of formation + Delta-G solvation = 60.899811 kcal Electronic energy + Delta-G solvation = -29039.361673 eV Core-core repulsion = 25068.185848 eV Total energy + Delta-G solvation = -3971.175825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.80941 -40.55759 -39.36481 -36.39527 -34.82484 -34.36544 -33.37485 -32.48175 -30.53813 -29.20754 -28.91819 -26.73757 -26.43735 -25.86905 -24.58210 -23.38876 -22.19271 -21.65545 -20.42845 -18.80285 -18.63360 -17.65715 -17.06786 -16.69589 -16.29718 -15.85924 -15.57146 -15.43206 -14.81802 -14.67261 -14.48081 -14.29170 -14.08935 -13.76701 -13.43170 -13.35779 -13.06115 -12.97585 -12.91772 -12.72539 -12.51965 -12.45936 -12.29109 -12.13534 -12.09919 -11.78910 -11.64436 -11.48586 -11.33070 -11.25432 -11.13269 -10.99905 -10.98298 -10.78728 -10.72012 -10.26067 -9.94918 -9.74526 -9.59674 -9.38009 -8.64452 -8.17549 -7.46959 -6.26396 -4.33714 2.14258 2.23651 2.55724 2.74523 2.90254 3.20839 3.23041 3.26785 3.30923 3.40733 3.62180 3.81123 3.91372 4.07174 4.13860 4.29560 4.64930 4.76140 5.01482 5.05827 5.06918 5.07261 5.19978 5.22140 5.26953 5.30958 5.33336 5.34401 5.40155 5.42508 5.63606 5.65809 5.75660 5.82822 5.95553 5.97824 6.03047 6.06490 6.08530 6.24890 6.37245 6.45635 6.55639 6.85978 7.01517 7.03106 7.12357 7.21492 7.52207 7.66242 7.88517 8.05583 8.07294 8.67208 8.75673 9.32589 10.81151 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.001908 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.965110 B =14673.552654 C =15079.135841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.907 3.093 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.270 4.270 17 C -0.010 4.010 18 C -0.135 4.135 19 C 0.516 3.484 20 O -0.536 6.536 21 N -0.740 5.740 22 C 0.140 3.860 23 C -0.012 4.012 24 C 0.224 3.776 25 N -0.414 5.414 26 C -0.119 4.119 27 C -0.145 4.145 28 C -0.113 4.113 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.399 0.601 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 -24.952 11.168 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.282 4.282 17 C -0.049 4.049 18 C -0.175 4.175 19 C 0.304 3.696 20 O -0.412 6.412 21 N -0.394 5.394 22 C 0.015 3.985 23 C -0.016 4.016 24 C -0.095 4.095 25 N -0.089 5.089 26 C -0.157 4.157 27 C -0.182 4.182 28 C -0.152 4.152 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.233 0.767 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.836 -22.725 11.429 27.649 hybrid contribution 0.671 -0.401 -0.664 1.026 sum -10.165 -23.126 10.765 27.460 Atomic orbital electron populations 1.20027 0.88085 1.02428 1.01802 1.21945 0.96101 0.90795 1.02533 1.77276 0.87502 1.22670 1.24649 1.49245 1.05773 1.04207 1.51216 1.19645 0.77972 0.89537 0.98897 1.21266 1.13056 1.31766 0.91314 0.91856 1.24931 0.95706 0.95002 0.98166 1.69908 1.18947 1.32926 1.31221 0.86407 0.78005 0.78480 0.83760 1.19954 1.20949 1.19931 1.20778 0.96115 0.85687 1.01223 1.20348 0.93740 0.97120 1.03177 1.19345 0.91345 0.95088 1.22382 1.19385 1.01623 0.90907 0.92964 1.21765 1.03085 0.91113 1.01518 1.21055 0.76315 0.89286 0.82921 1.90702 1.50741 1.68368 1.31374 1.46108 1.70472 1.13491 1.09313 1.21310 1.01615 0.83225 0.92322 1.19565 0.96889 0.92605 0.92559 1.28006 0.93924 0.93837 0.93715 1.81122 1.08801 1.09459 1.09474 1.23099 0.94172 0.98118 1.00360 1.22928 0.97596 0.99650 0.98038 1.22987 1.00728 0.91256 1.00273 0.91645 0.91570 0.91228 0.93102 0.93112 0.92211 0.90442 0.90957 0.91091 0.91323 0.91268 0.89026 0.88949 0.76658 0.90460 0.89192 0.87526 0.90319 0.89934 0.89967 0.90221 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.26 36.01 0.37 -0.57 16 2 C 0.05 0.97 7.22 -82.40 -0.59 0.38 16 3 N -0.30 -6.89 12.58 33.67 0.42 -6.46 16 4 N -0.32 -7.60 3.60 -58.32 -0.21 -7.81 16 5 C 0.26 6.61 6.00 -5.20 -0.03 6.58 16 6 C -0.54 -14.84 9.39 -34.44 -0.32 -15.17 16 7 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 10 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 15 C -0.09 -1.38 9.72 36.01 0.35 -1.03 16 16 C -0.27 -4.80 5.35 -105.05 -0.56 -5.36 16 17 C -0.01 -0.14 4.41 -27.89 -0.12 -0.26 16 18 C -0.13 -1.50 5.68 -27.89 -0.16 -1.66 16 19 C 0.52 5.64 7.83 -10.98 -0.09 5.56 16 20 O -0.54 -7.66 15.98 5.56 0.09 -7.57 16 21 N -0.74 -5.74 5.30 -60.29 -0.32 -6.06 16 22 C 0.14 0.82 5.13 -4.04 -0.02 0.80 16 23 C -0.01 -0.05 1.03 -156.48 -0.16 -0.21 16 24 C 0.22 1.67 13.02 -20.90 -0.27 1.39 16 25 N -0.41 -4.34 18.51 41.99 0.78 -3.56 16 26 C -0.12 -0.34 7.20 -25.92 -0.19 -0.53 16 27 C -0.14 -0.36 7.79 -25.92 -0.20 -0.56 16 28 C -0.11 -0.28 7.21 -25.92 -0.19 -0.47 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.88 7.25 -51.93 -0.38 0.51 16 32 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.05 1.29 7.05 -51.93 -0.37 0.92 16 34 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 37 H 0.07 0.91 7.77 -51.93 -0.40 0.50 16 38 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 39 H 0.07 0.99 7.20 -51.93 -0.37 0.62 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.40 2.64 7.69 -40.82 -0.31 2.32 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 45 H 0.11 0.20 7.96 -51.93 -0.41 -0.22 16 46 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 47 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 48 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 49 H 0.08 0.23 8.08 -51.93 -0.42 -0.19 16 50 H 0.11 0.11 8.10 -51.93 -0.42 -0.31 16 LS Contribution 421.08 15.07 6.35 6.35 Total: -1.00 -34.32 421.08 -8.07 -42.39 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.04 Total: -0.92 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.86 Total: -8.15 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 1.41 Total: -48.31 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.32 -8.07 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362574300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.289 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds