Wall clock time and date at job start Wed Apr 1 2020 03:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.90117 * 2 1 4 4 N 1.40086 * 108.20944 * 180.26098 * 3 2 1 5 5 C 1.46495 * 126.04225 * 179.73996 * 4 3 2 6 6 C 1.50690 * 109.47400 * 269.98131 * 5 4 3 7 7 H 1.08004 * 120.00399 * 359.97438 * 6 5 4 8 8 C 1.37885 * 120.00252 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99472 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00135 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47283 * 59.99789 * 10 8 6 12 12 H 1.48497 * 109.47073 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46942 * 299.99843 * 10 8 6 14 14 C 1.34954 * 107.91886 * 359.72236 * 4 3 2 15 15 C 1.50705 * 126.12030 * 179.97438 * 14 4 3 16 16 C 1.35309 * 107.74977 * 359.97438 * 14 4 3 17 17 C 1.50700 * 126.04114 * 180.02562 * 16 14 4 18 18 C 1.52992 * 109.47257 * 89.99766 * 17 16 14 19 19 C 1.50700 * 109.47257 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00113 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.46494 * 119.99635 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47001 * 180.02562 * 22 21 19 24 24 C 1.47199 * 112.85075 * 48.79882 * 23 22 21 25 25 N 8.07926 * 72.52397 * 133.78391 * 2 1 3 26 26 C 1.53783 * 113.61125 * 277.49729 * 23 22 21 27 27 C 1.53784 * 87.08121 * 220.01870 * 26 23 22 28 28 C 1.53776 * 87.08183 * 25.43342 * 27 26 23 29 29 H 1.09004 * 109.46949 * 270.20411 * 1 2 3 30 30 H 1.08999 * 109.47109 * 30.20727 * 1 2 3 31 31 H 1.08995 * 109.47299 * 150.20687 * 1 2 3 32 32 H 1.09006 * 109.46532 * 29.98030 * 5 4 3 33 33 H 1.09003 * 109.47125 * 149.97640 * 5 4 3 34 34 H 0.97000 * 119.99820 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47455 * 270.02547 * 15 14 4 36 36 H 1.09000 * 109.47357 * 30.03371 * 15 14 4 37 37 H 1.09007 * 109.46282 * 150.02955 * 15 14 4 38 38 H 1.09004 * 109.46932 * 329.99545 * 17 16 14 39 39 H 1.09005 * 109.47238 * 209.99923 * 17 16 14 40 40 H 1.09004 * 109.47330 * 60.00023 * 18 17 16 41 41 H 1.08997 * 109.47279 * 300.00509 * 18 17 16 42 42 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 43 43 H 1.09005 * 109.47306 * 299.99972 * 22 21 19 44 44 H 1.09002 * 109.47518 * 60.00210 * 22 21 19 45 45 H 1.09004 * 113.61679 * 334.56752 * 26 23 22 46 46 H 1.09000 * 113.61479 * 105.46878 * 26 23 22 47 47 H 1.09000 * 113.61340 * 270.88102 * 27 26 23 48 48 H 1.09002 * 113.61350 * 139.98227 * 27 26 23 49 49 H 1.09005 * 113.61547 * 220.02267 * 28 27 26 50 50 H 1.08994 * 113.61857 * 89.11325 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0135 6 6 5.1880 1.7951 -1.4367 7 1 4.6185 1.3781 -2.2541 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1052 -0.7002 10 14 6.7734 2.9614 -3.4598 11 1 5.6535 3.6439 -4.1565 12 1 7.9706 3.8399 -3.4672 13 1 7.0891 1.6894 -4.1582 14 6 3.6142 -0.7154 -0.0035 15 6 4.8350 -1.5990 -0.0086 16 6 2.3272 -1.1330 0.0046 17 6 1.8599 -2.5658 0.0105 18 6 1.7097 -3.0472 1.4549 19 6 1.2418 -4.4798 1.4609 20 8 1.0481 -5.0588 0.4130 21 7 1.0387 -5.1175 2.6308 22 6 0.5845 -6.5102 2.6365 23 6 0.4329 -6.9913 4.0810 24 6 -0.3314 -6.0529 4.9188 25 7 -0.9193 -5.3323 5.5636 26 6 1.7541 -7.4532 4.7182 27 6 0.9527 -8.5974 5.3614 28 6 -0.0421 -8.4492 4.1982 29 1 -0.3633 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5106 32 1 4.5588 2.4342 0.4997 33 1 5.6118 0.9990 0.4974 34 1 7.7408 3.6690 -0.8822 35 1 5.1239 -1.8136 -1.0374 36 1 5.6539 -1.0903 0.5002 37 1 4.6102 -2.5322 0.5079 38 1 2.5905 -3.1884 -0.5059 39 1 0.8983 -2.6365 -0.4979 40 1 0.9791 -2.4246 1.9714 41 1 2.6712 -2.9765 1.9633 42 1 1.1975 -4.6557 3.4689 43 1 -0.3769 -6.5810 2.1276 44 1 1.3153 -7.1330 2.1206 45 1 2.4937 -7.7922 3.9928 46 1 2.1614 -6.7457 5.4403 47 1 0.5298 -8.3418 6.3329 48 1 1.4803 -9.5512 5.3660 49 1 -1.0850 -8.5457 4.5005 50 1 0.2063 -9.0604 3.3306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362574300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:52 Heat of formation + Delta-G solvation = 39.937289 kcal Electronic energy + Delta-G solvation = -29040.270677 eV Core-core repulsion = 25068.185848 eV Total energy + Delta-G solvation = -3972.084829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.15203 -41.23681 -40.10100 -37.02232 -36.11448 -35.46565 -34.83107 -34.19153 -31.84778 -30.57572 -29.80044 -27.95008 -27.61353 -26.66035 -25.56545 -24.54321 -23.61209 -22.04676 -21.19561 -20.31355 -20.13455 -18.82309 -18.31185 -17.64791 -17.23623 -16.90425 -16.57230 -16.24007 -16.10659 -15.82218 -15.34166 -15.27482 -14.89945 -14.79016 -14.56458 -14.38431 -14.26879 -14.04455 -13.96003 -13.82370 -13.56671 -13.34804 -13.28325 -13.23468 -13.16714 -13.04976 -12.84992 -12.76186 -12.62950 -12.58478 -12.51855 -12.21443 -11.84773 -11.72954 -11.69834 -11.45486 -11.28678 -11.15126 -10.78931 -10.75307 -10.05935 -9.83995 -9.01968 -8.34981 -6.52789 1.17980 1.36080 1.37735 1.46791 1.59354 1.65023 1.73085 1.88556 1.94858 2.29218 2.33140 2.74639 2.94390 3.52667 3.58071 3.68374 3.82091 3.92584 3.92961 3.98154 4.23931 4.28432 4.36206 4.45265 4.57865 4.62238 4.65787 4.71637 4.72865 4.82348 4.84517 4.87767 4.88400 4.90637 4.91458 4.97816 5.04918 5.09067 5.12424 5.13385 5.18887 5.31909 5.45588 5.45947 5.47528 5.50141 5.56906 5.80079 6.05183 6.32591 6.42852 6.53098 6.62194 7.11713 7.18415 7.27738 8.70828 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.001908 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.965110 B =14673.552654 C =15079.135841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.052 3.948 3 N -0.352 5.352 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.277 1.277 12 H -0.272 1.272 13 H -0.264 1.264 14 C 0.079 3.921 15 C -0.082 4.082 16 C -0.258 4.258 17 C -0.003 4.003 18 C -0.130 4.130 19 C 0.522 3.478 20 O -0.571 6.571 21 N -0.729 5.729 22 C 0.139 3.861 23 C -0.013 4.013 24 C 0.246 3.754 25 N -0.472 5.472 26 C -0.114 4.114 27 C -0.144 4.144 28 C -0.106 4.106 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.017 0.983 33 H 0.048 0.952 34 H 0.274 0.726 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.406 0.594 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.125 0.875 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.075 0.925 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 -27.762 10.823 31.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 N -0.176 5.176 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.202 1.202 12 H -0.196 1.196 13 H -0.189 1.189 14 C -0.051 4.051 15 C -0.140 4.140 16 C -0.270 4.270 17 C -0.042 4.042 18 C -0.170 4.170 19 C 0.310 3.690 20 O -0.450 6.450 21 N -0.382 5.382 22 C 0.015 3.985 23 C -0.017 4.017 24 C -0.071 4.071 25 N -0.147 5.147 26 C -0.152 4.152 27 C -0.181 4.181 28 C -0.145 4.145 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.241 0.759 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.143 0.857 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.094 0.906 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.941 -25.566 11.131 29.954 hybrid contribution 0.607 0.393 -0.498 0.878 sum -10.334 -25.173 10.633 29.215 Atomic orbital electron populations 1.20197 0.84905 1.03479 1.03546 1.22772 0.98053 0.90369 1.00085 1.77208 0.87896 1.25060 1.27399 1.49006 1.05267 1.05239 1.54039 1.19122 0.79044 0.88698 0.97539 1.21395 1.13460 1.32481 0.91793 0.93456 1.25759 0.95415 0.94443 1.02361 1.69995 1.19276 1.33151 1.33195 0.85412 0.77763 0.78723 0.78638 1.20229 1.19610 1.18856 1.21496 0.98255 0.84642 1.00714 1.20453 0.92094 0.97931 1.03555 1.19743 0.90322 0.96612 1.20313 1.19363 1.01429 0.88290 0.95114 1.21650 1.04170 0.91634 0.99514 1.20855 0.76033 0.88998 0.83126 1.90697 1.52655 1.69030 1.32661 1.46033 1.69131 1.14296 1.08696 1.21472 1.01686 0.82172 0.93194 1.19769 0.97885 0.92870 0.91195 1.28584 0.92764 0.93001 0.92757 1.81141 1.10838 1.11379 1.11391 1.23167 0.93597 0.97941 1.00496 1.22916 0.97520 1.00251 0.97408 1.23072 1.00612 0.89664 1.01157 0.89441 0.91727 0.88938 0.96462 0.93435 0.91726 0.90476 0.91915 0.87271 0.91283 0.91150 0.88276 0.87669 0.75879 0.91109 0.87640 0.85705 0.90832 0.91119 0.88406 0.90613 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.26 71.24 0.73 -1.00 16 2 C 0.05 1.97 7.22 43.10 0.31 2.28 16 3 N -0.35 -16.78 12.58 -47.38 -0.60 -17.37 16 4 N -0.36 -17.20 3.60 -338.41 -1.22 -18.41 16 5 C 0.28 14.86 6.00 85.63 0.51 15.38 16 6 C -0.55 -31.67 9.39 25.60 0.24 -31.43 16 7 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 8 C 0.02 1.18 5.46 84.66 0.46 1.64 16 9 N -0.92 -52.65 13.29 21.45 0.28 -52.36 16 10 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 13 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 14 C 0.08 3.11 6.93 41.40 0.29 3.39 16 15 C -0.08 -2.60 9.72 71.24 0.69 -1.90 16 16 C -0.26 -8.94 5.35 -20.14 -0.11 -9.05 16 17 C 0.00 -0.08 4.41 29.85 0.13 0.05 16 18 C -0.13 -2.57 5.68 29.85 0.17 -2.40 16 19 C 0.52 10.13 7.83 87.66 0.69 10.82 16 20 O -0.57 -15.09 15.98 -3.03 -0.05 -15.14 16 21 N -0.73 -9.52 5.30 -463.05 -2.45 -11.97 16 22 C 0.14 1.26 5.13 86.38 0.44 1.70 16 23 C -0.01 -0.08 1.03 -53.46 -0.05 -0.14 16 24 C 0.25 3.40 13.02 89.49 1.17 4.56 16 25 N -0.47 -9.77 18.51 19.95 0.37 -9.40 16 26 C -0.11 -0.34 7.20 31.12 0.22 -0.11 16 27 C -0.14 -0.34 7.79 31.12 0.24 -0.10 16 28 C -0.11 -0.24 7.21 31.12 0.22 -0.02 16 29 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.11 7.25 -2.39 -0.02 2.10 16 32 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.05 2.53 7.05 -2.39 -0.02 2.52 16 34 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 2.09 7.08 -2.39 -0.02 2.07 16 37 H 0.11 2.53 7.77 -2.38 -0.02 2.51 16 38 H 0.07 1.83 7.73 -2.38 -0.02 1.81 16 39 H 0.07 1.85 7.20 -2.38 -0.02 1.83 16 40 H 0.10 1.84 8.14 -2.38 -0.02 1.83 16 41 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.41 4.42 7.69 -92.71 -0.71 3.71 16 43 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.11 0.72 7.94 -2.39 -0.02 0.70 16 45 H 0.12 -0.02 7.96 -2.38 -0.02 -0.04 16 46 H 0.07 0.33 8.09 -2.39 -0.02 0.31 16 47 H 0.07 0.36 8.13 -2.39 -0.02 0.34 16 48 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 49 H 0.08 0.27 8.08 -2.38 -0.02 0.25 16 50 H 0.13 -0.23 8.10 -2.39 -0.02 -0.25 16 Total: -1.00 -77.47 421.08 4.97 -72.50 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.24 Total: 12.71 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 6.36 Total: -6.31 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -3.61 Total: -109.51 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.05 Total: -15.14 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -77.47 4.97 -72.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362574300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.441 kcal (2) G-P(sol) polarization free energy of solvation -77.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds