Wall clock time and date at job start Wed Apr 1 2020 03:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35446 * 125.69238 * 2 1 4 4 N 1.36435 * 107.22205 * 179.97438 * 3 2 1 5 5 C 1.36725 * 132.26877 * 180.02562 * 4 3 2 6 6 C 1.34538 * 120.95481 * 180.02562 * 5 4 3 7 7 C 1.41770 * 120.14855 * 359.96874 * 6 5 4 8 8 C 1.47660 * 120.37090 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99629 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00057 * 0.02562 * 8 7 6 11 11 C 1.46495 * 119.99814 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46947 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46937 * 179.97438 * 12 11 10 14 14 N 1.46504 * 109.46787 * 179.97438 * 13 12 11 15 15 C 1.36935 * 120.00240 * 269.99873 * 14 13 12 16 16 H 1.08002 * 119.99947 * 144.85582 * 15 14 13 17 17 C 1.38813 * 120.00118 * 324.86874 * 15 14 13 18 18 N 1.31620 * 120.00296 * 157.16474 * 17 15 14 19 19 Si 1.86805 * 119.99882 * 337.15625 * 17 15 14 20 20 H 1.48503 * 109.46575 * 95.36016 * 19 17 15 21 21 H 1.48501 * 109.47271 * 215.36088 * 19 17 15 22 22 H 1.48503 * 109.46987 * 335.36170 * 19 17 15 23 23 C 1.46499 * 119.99788 * 90.00320 * 14 13 12 24 24 C 1.53009 * 109.47014 * 121.89947 * 23 14 13 25 25 C 1.52993 * 109.47196 * 241.89561 * 23 14 13 26 26 C 1.38440 * 119.26064 * 0.02562 * 7 6 5 27 27 C 1.37196 * 106.97465 * 359.97438 * 4 3 2 28 28 N 1.32660 * 108.05232 * 359.77437 * 27 4 3 29 29 H 1.08998 * 109.46670 * 89.99839 * 1 2 3 30 30 H 1.08995 * 109.47022 * 330.00462 * 1 2 3 31 31 H 1.08993 * 109.47449 * 210.00098 * 1 2 3 32 32 H 1.07998 * 126.39129 * 359.93673 * 3 2 1 33 33 H 1.08002 * 119.52317 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.92394 * 179.97438 * 6 5 4 35 35 H 0.96999 * 119.99862 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.47568 * 299.99841 * 11 10 8 37 37 H 1.09004 * 109.47357 * 59.99977 * 11 10 8 38 38 H 1.08993 * 109.47095 * 299.99905 * 12 11 10 39 39 H 1.08996 * 109.46895 * 60.00312 * 12 11 10 40 40 H 1.08994 * 109.47759 * 300.00312 * 13 12 11 41 41 H 1.09004 * 109.47175 * 60.00455 * 13 12 11 42 42 H 0.97001 * 120.00046 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47312 * 1.90114 * 23 14 13 44 44 H 1.08993 * 109.47011 * 65.32868 * 24 23 14 45 45 H 1.09001 * 109.47102 * 185.33106 * 24 23 14 46 46 H 1.09000 * 109.46807 * 305.32592 * 24 23 14 47 47 H 1.09005 * 109.46803 * 55.18844 * 25 23 14 48 48 H 1.08999 * 109.47321 * 175.18416 * 25 23 14 49 49 H 1.08998 * 109.47609 * 295.19495 * 25 23 14 50 50 H 1.07997 * 120.45921 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2973 1.1000 0.0000 4 7 3.5913 0.6678 0.0006 5 6 4.7841 1.3361 0.0013 6 6 5.9518 0.6678 0.0013 7 6 5.9608 -0.7499 0.0011 8 6 7.2395 -1.4883 0.0005 9 8 7.2393 -2.7042 0.0000 10 7 8.4068 -0.8146 0.0006 11 6 9.6753 -1.5473 -0.0006 12 6 10.8384 -0.5531 -0.0009 13 6 12.1633 -1.3183 -0.0014 14 7 13.2770 -0.3664 -0.0024 15 6 13.7968 0.0781 -1.1886 16 1 14.1556 1.0932 -1.2743 17 6 13.8622 -0.7757 -2.2811 18 7 13.9224 -0.2819 -3.4997 19 14 13.8652 -2.6257 -2.0218 20 1 12.4809 -3.1464 -2.1561 21 1 14.7362 -3.2668 -3.0394 22 1 14.3806 -2.9343 -0.6638 23 6 13.8345 0.1098 1.2659 24 6 15.3260 -0.2266 1.3256 25 6 13.6490 1.6250 1.3677 26 6 4.7574 -1.4342 0.0005 27 6 3.5555 -0.7037 0.0015 28 7 2.2839 -1.0817 0.0065 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5137 31 1 -0.3634 -0.8899 0.5138 32 1 1.9650 2.1276 -0.0010 33 1 4.7891 2.4161 0.0011 34 1 6.8844 1.2126 0.0014 35 1 8.4069 0.1554 0.0007 36 1 9.7334 -2.1747 0.8888 37 1 9.7326 -2.1732 -0.8911 38 1 10.7802 0.0739 -0.8905 39 1 10.7813 0.0730 0.8894 40 1 12.2214 -1.9452 0.8883 41 1 12.2207 -1.9449 -0.8916 42 1 13.9686 -0.8786 -4.2631 43 1 13.3191 -0.3759 2.0946 44 1 15.8558 0.3335 0.5552 45 1 15.7200 0.0419 2.3058 46 1 15.4645 -1.2947 1.1585 47 1 12.5949 1.8714 1.2395 48 1 13.9857 1.9674 2.3462 49 1 14.2339 2.1158 0.5898 50 1 4.7416 -2.5141 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493870302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:33 Heat of formation + Delta-G solvation = 71.543986 kcal Electronic energy + Delta-G solvation = -29123.855638 eV Core-core repulsion = 25153.141379 eV Total energy + Delta-G solvation = -3970.714259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.20091 -39.94314 -37.53527 -37.11831 -35.26446 -33.98475 -32.69138 -32.20626 -31.69669 -29.65651 -29.47213 -27.87663 -26.35989 -25.56772 -24.11535 -23.44218 -23.11082 -21.44304 -21.21656 -20.42837 -19.46013 -18.25220 -17.90090 -16.90249 -16.43069 -16.39558 -15.75557 -15.71093 -15.11290 -14.99222 -14.93808 -14.66450 -13.99892 -13.98127 -13.62051 -13.56019 -13.40706 -13.36836 -13.08062 -12.67700 -12.40305 -12.23912 -12.21938 -11.93997 -11.85255 -11.80401 -11.43510 -11.31357 -11.16978 -10.84874 -10.76287 -10.49170 -10.47104 -10.45321 -10.11087 -9.96000 -9.70989 -9.40812 -9.11574 -9.04908 -8.50723 -8.22381 -6.89339 -6.00909 -3.39827 0.14504 0.68061 2.17208 2.30110 2.68579 2.97816 3.30353 3.39146 3.47640 3.50879 3.81095 4.00686 4.20957 4.40364 4.50636 4.58997 4.78892 4.81303 4.83751 4.98402 5.22512 5.28589 5.29574 5.35132 5.43125 5.48776 5.52203 5.63590 5.68200 5.74836 5.77801 5.97284 5.99267 6.00657 6.13194 6.16183 6.23245 6.27226 6.28711 6.46893 6.51379 6.60019 6.62455 6.66643 6.70828 6.85252 7.05045 7.11725 7.42316 7.48296 8.02942 8.09616 8.36700 8.97630 9.71067 10.10237 11.14724 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.002007 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.827662 B =13948.372121 C =14455.513759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.058 3.942 3 C -0.091 4.091 4 N -0.353 5.353 5 C 0.051 3.949 6 C -0.116 4.116 7 C -0.120 4.120 8 C 0.559 3.441 9 O -0.534 6.534 10 N -0.715 5.715 11 C 0.117 3.883 12 C -0.146 4.146 13 C 0.142 3.858 14 N -0.601 5.601 15 C -0.259 4.259 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.901 5.901 19 Si 0.874 3.126 20 H -0.285 1.285 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.166 3.834 24 C -0.152 4.152 25 C -0.152 4.152 26 C -0.002 4.002 27 C 0.211 3.789 28 N -0.477 5.477 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.185 0.815 33 H 0.170 0.830 34 H 0.156 0.844 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.262 0.738 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.037 0.963 49 H 0.056 0.944 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.041 6.283 9.791 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.224 4.224 4 N -0.025 5.025 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.129 4.129 8 C 0.345 3.655 9 O -0.411 6.411 10 N -0.366 5.366 11 C -0.007 4.007 12 C -0.186 4.186 13 C 0.015 3.985 14 N -0.323 5.323 15 C -0.388 4.388 16 H 0.098 0.902 17 C -0.166 4.166 18 N -0.542 5.542 19 Si 0.705 3.295 20 H -0.214 1.214 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.060 3.940 24 C -0.211 4.211 25 C -0.212 4.212 26 C -0.024 4.024 27 C -0.030 4.030 28 N -0.198 5.198 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.202 0.798 33 H 0.187 0.813 34 H 0.174 0.826 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.075 0.925 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.231 4.629 9.622 23.765 hybrid contribution 0.392 0.417 -0.142 0.589 sum -20.839 5.046 9.480 23.444 Atomic orbital electron populations 1.20157 0.86611 1.03319 1.02932 1.21021 0.97042 0.87845 1.01785 1.22529 0.80704 1.01263 1.17909 1.42811 1.06220 1.08842 1.44611 1.21460 0.82627 0.98856 1.04113 1.20861 0.97867 0.93319 1.01694 1.19987 0.93847 0.93328 1.05766 1.17879 0.83344 0.87133 0.77133 1.90815 1.87449 1.13162 1.49699 1.45987 1.05860 1.10506 1.74295 1.21562 0.81363 0.95444 1.02301 1.22437 0.94633 0.98756 1.02815 1.21075 0.86131 0.91810 0.99478 1.44237 1.33456 1.52336 1.02257 1.18667 1.37756 0.96120 0.86244 0.90186 1.25408 0.98516 0.97472 0.95248 1.69865 1.51827 1.34905 0.97624 0.87005 0.76746 0.88099 0.77655 1.21371 1.23206 1.19460 1.20399 0.92737 0.93065 0.87847 1.22119 0.98034 1.01400 0.99542 1.22155 1.01069 0.98294 0.99633 1.20698 0.86469 1.01375 0.93820 1.20738 0.94273 0.80332 1.07662 1.70595 0.98043 1.29488 1.21691 0.90615 0.90715 0.90543 0.79807 0.81298 0.82624 0.76500 0.91531 0.91265 0.90450 0.92120 0.94064 0.92750 0.92787 0.93267 0.92088 0.94501 0.93471 0.93503 0.94404 0.92481 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.01 0.38 -0.07 16 2 C 0.06 0.57 7.06 -83.00 -0.59 -0.02 16 3 C -0.09 -0.76 11.64 -16.50 -0.19 -0.95 16 4 N -0.35 -3.45 2.94 -62.75 -0.18 -3.63 16 5 C 0.05 0.37 10.91 -16.68 -0.18 0.19 16 6 C -0.12 -0.93 9.48 -39.54 -0.37 -1.30 16 7 C -0.12 -1.35 5.90 -104.63 -0.62 -1.97 16 8 C 0.56 7.73 7.77 -12.41 -0.10 7.63 16 9 O -0.53 -9.38 16.36 5.29 0.09 -9.29 16 10 N -0.72 -8.96 5.51 -61.31 -0.34 -9.30 16 11 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 12 C -0.15 -2.38 5.65 -26.73 -0.15 -2.53 16 13 C 0.14 2.81 4.49 -4.04 -0.02 2.79 16 14 N -0.60 -13.01 2.06 -165.66 -0.34 -13.35 16 15 C -0.26 -6.71 8.74 -15.06 -0.13 -6.84 16 16 H 0.08 2.25 7.17 -52.49 -0.38 1.88 16 17 C 0.03 0.93 5.31 -17.43 -0.09 0.84 16 18 N -0.90 -26.57 13.97 55.49 0.78 -25.80 16 19 Si 0.87 21.72 24.97 -169.99 -4.24 17.48 16 20 H -0.29 -6.93 6.66 56.52 0.38 -6.56 16 21 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.17 3.05 3.36 -67.93 -0.23 2.82 16 24 C -0.15 -2.75 9.04 37.16 0.34 -2.41 16 25 C -0.15 -2.54 9.11 37.15 0.34 -2.20 16 26 C 0.00 -0.03 9.70 -38.60 -0.37 -0.40 16 27 C 0.21 2.60 7.79 -155.96 -1.22 1.38 16 28 N -0.48 -6.20 11.31 -9.02 -0.10 -6.30 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.16 0.81 6.46 -52.48 -0.34 0.47 16 35 H 0.40 3.82 6.54 -40.82 -0.27 3.55 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 41 H 0.05 1.22 2.97 -51.93 -0.15 1.07 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.05 0.82 7.78 -51.93 -0.40 0.42 16 44 H 0.06 1.20 7.80 -51.93 -0.40 0.79 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 1.05 7.25 -51.93 -0.38 0.67 16 50 H 0.17 2.04 7.67 -52.49 -0.40 1.63 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -34.05 405.58 -9.26 -43.32 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.79 Total: 2.09 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.23 Total: -1.32 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.19 Total: -58.38 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.24 Total: 17.48 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.05 -9.26 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493870302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.859 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds