Wall clock time and date at job start Wed Apr 1 2020 03:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35446 * 125.69238 * 2 1 4 4 N 1.36435 * 107.22205 * 179.97438 * 3 2 1 5 5 C 1.36725 * 132.26877 * 180.02562 * 4 3 2 6 6 C 1.34538 * 120.95481 * 180.02562 * 5 4 3 7 7 C 1.41770 * 120.14855 * 359.96874 * 6 5 4 8 8 C 1.47660 * 120.37090 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99629 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00057 * 0.02562 * 8 7 6 11 11 C 1.46495 * 119.99814 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46947 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46937 * 179.97438 * 12 11 10 14 14 N 1.46504 * 109.46787 * 179.97438 * 13 12 11 15 15 C 1.36935 * 120.00240 * 269.99873 * 14 13 12 16 16 H 1.08002 * 119.99947 * 144.85582 * 15 14 13 17 17 C 1.38813 * 120.00118 * 324.86874 * 15 14 13 18 18 N 1.31620 * 120.00296 * 157.16474 * 17 15 14 19 19 Si 1.86805 * 119.99882 * 337.15625 * 17 15 14 20 20 H 1.48503 * 109.46575 * 95.36016 * 19 17 15 21 21 H 1.48501 * 109.47271 * 215.36088 * 19 17 15 22 22 H 1.48503 * 109.46987 * 335.36170 * 19 17 15 23 23 C 1.46499 * 119.99788 * 90.00320 * 14 13 12 24 24 C 1.53009 * 109.47014 * 121.89947 * 23 14 13 25 25 C 1.52993 * 109.47196 * 241.89561 * 23 14 13 26 26 C 1.38440 * 119.26064 * 0.02562 * 7 6 5 27 27 C 1.37196 * 106.97465 * 359.97438 * 4 3 2 28 28 N 1.32660 * 108.05232 * 359.77437 * 27 4 3 29 29 H 1.08998 * 109.46670 * 89.99839 * 1 2 3 30 30 H 1.08995 * 109.47022 * 330.00462 * 1 2 3 31 31 H 1.08993 * 109.47449 * 210.00098 * 1 2 3 32 32 H 1.07998 * 126.39129 * 359.93673 * 3 2 1 33 33 H 1.08002 * 119.52317 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.92394 * 179.97438 * 6 5 4 35 35 H 0.96999 * 119.99862 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.47568 * 299.99841 * 11 10 8 37 37 H 1.09004 * 109.47357 * 59.99977 * 11 10 8 38 38 H 1.08993 * 109.47095 * 299.99905 * 12 11 10 39 39 H 1.08996 * 109.46895 * 60.00312 * 12 11 10 40 40 H 1.08994 * 109.47759 * 300.00312 * 13 12 11 41 41 H 1.09004 * 109.47175 * 60.00455 * 13 12 11 42 42 H 0.97001 * 120.00046 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47312 * 1.90114 * 23 14 13 44 44 H 1.08993 * 109.47011 * 65.32868 * 24 23 14 45 45 H 1.09001 * 109.47102 * 185.33106 * 24 23 14 46 46 H 1.09000 * 109.46807 * 305.32592 * 24 23 14 47 47 H 1.09005 * 109.46803 * 55.18844 * 25 23 14 48 48 H 1.08999 * 109.47321 * 175.18416 * 25 23 14 49 49 H 1.08998 * 109.47609 * 295.19495 * 25 23 14 50 50 H 1.07997 * 120.45921 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2973 1.1000 0.0000 4 7 3.5913 0.6678 0.0006 5 6 4.7841 1.3361 0.0013 6 6 5.9518 0.6678 0.0013 7 6 5.9608 -0.7499 0.0011 8 6 7.2395 -1.4883 0.0005 9 8 7.2393 -2.7042 0.0000 10 7 8.4068 -0.8146 0.0006 11 6 9.6753 -1.5473 -0.0006 12 6 10.8384 -0.5531 -0.0009 13 6 12.1633 -1.3183 -0.0014 14 7 13.2770 -0.3664 -0.0024 15 6 13.7968 0.0781 -1.1886 16 1 14.1556 1.0932 -1.2743 17 6 13.8622 -0.7757 -2.2811 18 7 13.9224 -0.2819 -3.4997 19 14 13.8652 -2.6257 -2.0218 20 1 12.4809 -3.1464 -2.1561 21 1 14.7362 -3.2668 -3.0394 22 1 14.3806 -2.9343 -0.6638 23 6 13.8345 0.1098 1.2659 24 6 15.3260 -0.2266 1.3256 25 6 13.6490 1.6250 1.3677 26 6 4.7574 -1.4342 0.0005 27 6 3.5555 -0.7037 0.0015 28 7 2.2839 -1.0817 0.0065 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5137 31 1 -0.3634 -0.8899 0.5138 32 1 1.9650 2.1276 -0.0010 33 1 4.7891 2.4161 0.0011 34 1 6.8844 1.2126 0.0014 35 1 8.4069 0.1554 0.0007 36 1 9.7334 -2.1747 0.8888 37 1 9.7326 -2.1732 -0.8911 38 1 10.7802 0.0739 -0.8905 39 1 10.7813 0.0730 0.8894 40 1 12.2214 -1.9452 0.8883 41 1 12.2207 -1.9449 -0.8916 42 1 13.9686 -0.8786 -4.2631 43 1 13.3191 -0.3759 2.0946 44 1 15.8558 0.3335 0.5552 45 1 15.7200 0.0419 2.3058 46 1 15.4645 -1.2947 1.1585 47 1 12.5949 1.8714 1.2395 48 1 13.9857 1.9674 2.3462 49 1 14.2339 2.1158 0.5898 50 1 4.7416 -2.5141 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493870302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:32 Heat of formation + Delta-G solvation = 50.314002 kcal Electronic energy + Delta-G solvation = -29124.776239 eV Core-core repulsion = 25153.141379 eV Total energy + Delta-G solvation = -3971.634861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.91129 -41.02603 -38.81053 -38.21890 -36.52711 -34.79238 -34.29925 -33.59267 -32.68436 -31.00548 -30.34838 -28.69348 -27.75395 -27.01020 -25.43539 -24.40760 -24.13363 -22.75429 -22.06613 -21.36695 -21.14131 -19.01149 -18.79484 -18.39439 -17.58626 -17.30751 -17.11832 -16.81381 -16.58999 -16.39111 -15.71304 -15.54786 -15.44367 -14.99384 -14.86799 -14.74525 -14.28684 -14.15762 -14.05272 -14.02479 -13.98131 -13.51966 -13.32026 -13.23387 -12.88608 -12.86931 -12.65304 -12.57445 -12.46778 -12.33342 -12.15556 -12.09769 -11.98856 -11.67130 -11.40567 -11.29385 -11.19654 -11.15504 -10.53418 -10.23144 -9.77715 -8.93384 -8.72514 -8.13431 -5.45845 -0.67024 0.00387 1.30972 1.42746 1.50718 1.52739 1.53963 1.84568 1.93302 2.45187 2.51564 3.05959 3.13095 3.35319 3.37685 3.50177 3.69977 3.92645 4.07642 4.10690 4.27045 4.29279 4.32055 4.32800 4.40779 4.53225 4.57312 4.61901 4.73506 4.76813 4.81380 4.84801 4.85788 4.89084 4.95189 4.98805 5.08967 5.11546 5.17948 5.22718 5.26196 5.29493 5.33438 5.45444 5.60424 5.60609 5.67664 5.98933 6.02792 6.28209 6.41532 6.76716 7.05056 7.07997 7.74553 8.14202 9.06531 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.002007 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.827662 B =13948.372121 C =14455.513759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.033 3.967 3 C -0.075 4.075 4 N -0.357 5.357 5 C 0.065 3.935 6 C -0.123 4.123 7 C -0.119 4.119 8 C 0.558 3.442 9 O -0.579 6.579 10 N -0.702 5.702 11 C 0.125 3.875 12 C -0.126 4.126 13 C 0.131 3.869 14 N -0.611 5.611 15 C -0.225 4.225 16 H 0.050 0.950 17 C -0.023 4.023 18 N -0.950 5.950 19 Si 0.928 3.072 20 H -0.282 1.282 21 H -0.320 1.320 22 H -0.259 1.259 23 C 0.156 3.844 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.025 4.025 27 C 0.183 3.817 28 N -0.520 5.520 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.230 0.770 33 H 0.219 0.781 34 H 0.188 0.812 35 H 0.417 0.583 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.257 0.743 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.032 0.968 47 H 0.050 0.950 48 H 0.070 0.930 49 H 0.029 0.971 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.460 8.935 12.475 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C -0.207 4.207 4 N -0.028 5.028 5 C -0.056 4.056 6 C -0.143 4.143 7 C -0.128 4.128 8 C 0.346 3.654 9 O -0.460 6.460 10 N -0.354 5.354 11 C 0.001 3.999 12 C -0.166 4.166 13 C 0.006 3.994 14 N -0.334 5.334 15 C -0.355 4.355 16 H 0.068 0.932 17 C -0.218 4.218 18 N -0.596 5.596 19 Si 0.760 3.240 20 H -0.210 1.210 21 H -0.250 1.250 22 H -0.183 1.183 23 C 0.051 3.949 24 C -0.207 4.207 25 C -0.203 4.203 26 C -0.047 4.047 27 C -0.058 4.058 28 N -0.242 5.242 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.246 0.754 33 H 0.235 0.765 34 H 0.205 0.795 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.660 7.308 12.363 26.828 hybrid contribution 0.771 -0.295 -0.876 1.204 sum -21.889 7.012 11.487 25.695 Atomic orbital electron populations 1.20265 0.84501 1.04261 1.03689 1.21735 0.98655 0.87754 1.01973 1.23265 0.79693 1.02659 1.15081 1.43081 1.07597 1.08005 1.44129 1.22244 0.81265 1.00797 1.01244 1.21155 0.99779 0.91502 1.01891 1.19831 0.91833 0.94912 1.06262 1.18268 0.84340 0.86704 0.76075 1.90791 1.88121 1.15305 1.51815 1.45762 1.04709 1.11295 1.73587 1.21304 0.82021 0.95078 1.01496 1.22135 0.93113 0.98290 1.03065 1.21177 0.87134 0.91823 0.99302 1.44398 1.34379 1.52419 1.02159 1.18520 1.34925 0.94542 0.87532 0.93212 1.25890 1.00105 1.00634 0.95176 1.69977 1.55475 1.35760 0.98362 0.86113 0.76448 0.84201 0.77267 1.20985 1.25010 1.18333 1.20710 0.92956 0.94340 0.86899 1.22081 0.97876 0.99981 1.00773 1.22043 1.01002 0.96641 1.00565 1.20565 0.87465 1.00783 0.95849 1.20660 0.93944 0.81863 1.09353 1.70537 0.99032 1.31669 1.22986 0.89866 0.87824 0.91546 0.75399 0.76478 0.79528 0.74471 0.90821 0.93815 0.92546 0.89359 0.91504 0.95596 0.93361 0.90208 0.94682 0.90846 0.94925 0.93061 0.91075 0.95215 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.42 71.24 0.74 0.00 16 2 C 0.03 0.60 7.06 41.71 0.29 0.90 16 3 C -0.07 -1.00 11.64 83.33 0.97 -0.03 16 4 N -0.36 -6.07 2.94 -352.44 -1.04 -7.11 16 5 C 0.06 0.68 10.91 83.08 0.91 1.59 16 6 C -0.12 -1.59 9.48 22.30 0.21 -1.38 16 7 C -0.12 -2.63 5.90 -19.87 -0.12 -2.74 16 8 C 0.56 15.39 7.77 86.73 0.67 16.06 16 9 O -0.58 -21.15 16.36 -3.99 -0.07 -21.22 16 10 N -0.70 -16.49 5.51 -466.14 -2.57 -19.05 16 11 C 0.13 3.61 5.67 86.38 0.49 4.10 16 12 C -0.13 -3.82 5.65 30.60 0.17 -3.65 16 13 C 0.13 4.95 4.49 86.38 0.39 5.34 16 14 N -0.61 -25.50 2.06 -678.02 -1.40 -26.90 16 15 C -0.22 -11.74 8.74 84.03 0.73 -11.00 16 16 H 0.05 2.89 7.17 -2.91 -0.02 2.87 16 17 C -0.02 -1.27 5.31 84.86 0.45 -0.82 16 18 N -0.95 -58.09 13.97 21.65 0.30 -57.79 16 19 Si 0.93 45.99 24.97 68.60 1.71 47.70 16 20 H -0.28 -13.60 6.66 99.48 0.66 -12.94 16 21 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 22 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 23 C 0.16 5.25 3.36 44.99 0.15 5.40 16 24 C -0.15 -5.02 9.04 71.99 0.65 -4.37 16 25 C -0.14 -4.35 9.11 71.98 0.66 -3.69 16 26 C -0.02 -0.64 9.70 22.91 0.22 -0.42 16 27 C 0.18 4.52 7.79 133.96 1.04 5.57 16 28 N -0.52 -13.82 11.31 -182.45 -2.06 -15.88 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.23 0.78 8.06 -2.91 -0.02 0.75 16 33 H 0.22 0.13 8.06 -2.91 -0.02 0.10 16 34 H 0.19 1.12 6.46 -2.91 -0.02 1.10 16 35 H 0.42 6.77 6.54 -92.71 -0.61 6.17 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.19 7.90 -2.39 -0.02 2.17 16 41 H 0.03 1.15 2.97 -2.38 -0.01 1.14 16 42 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 43 H 0.08 2.26 7.78 -2.39 -0.02 2.24 16 44 H 0.03 1.34 7.80 -2.39 -0.02 1.32 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.03 1.04 7.25 -2.39 -0.02 1.03 16 50 H 0.15 4.08 7.67 -2.91 -0.02 4.06 16 Total: -1.00 -80.24 405.58 3.82 -76.42 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.30 Total: 12.99 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 8.64 Total: 10.84 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -6.77 Total: -126.73 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.07 Total: -21.22 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.71 Total: 47.70 kcal Total: -80.24 3.82 -76.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493870302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.731 kcal (2) G-P(sol) polarization free energy of solvation -80.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds